ClCG09G008070 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG09G008070
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	LOB domain-containing protein, putative
Location	CG_Chr09 : 7412634 .. 7413398 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCCTCTTCTTCTTCTCCTTCTTCTCCTCCATGTGGAGCTTGCAAGTTTCTTAGAAGAAAGTGTGTCAATGGCTGCATCTTTGCTCCTTATTTCCGCCACGAGCTCGGTGCCTCCCAATTCTCTGCCATCCACAAAGTTTTCGGTGCAAGCAATGCTTCCAAGCTTCTCGCTCACCTCCCAGTCTCCCACCGTTGCGAAGCGGCGGTGACGATCTCATACGAAGCTCAAGCGAGACTTCAAGATCCGATCTACGGTTGTGTATCTCATATTTTCGCTCTCCAGCAACAGGTTAATACGTAAATTAAATTATCATAACTTATCGACTTAAGACTCTAGATTCGATTCGATGATAATTCATCATATTTTAAAAGATAAGTAAAATGATCAAACTTATTTGAATTCATAAGCTTAAATTTTCAAGTTTCTGTTCGTTTCTTTCAAAACCCTAATTTTCGAAATCGATTTTGATGATTATTTTAATGGTTGGGAAAATGGTAGGTTATGAATCTAAGGGCTCAAGTGGCTTATTTAAGAGAACAAGCAGCTCAAATCCTTCTCAACAACTACACTACAAGAAACCCTATTGAATTACCTTACGAAAAATCTTCATTTTATTCCGACGACCCATTACTAGATCTTCAAAGTTGGCTTCTGGCGGAGAGCTGCAGCGCCGCCGCGCCGGAGTTTGAATCTGCAGCGGTGCCGTACTTTGAGATGAGCGTCGTCGATTCAAATCTCGCCGGAGATTTCTGTTGCTAA

mRNA sequence

ATGGCAGCCTCTTCTTCTTCTCCTTCTTCTCCTCCATGTGGAGCTTGCAAGTTTCTTAGAAGAAAGTGTGTCAATGGCTGCATCTTTGCTCCTTATTTCCGCCACGAGCTCGGTGCCTCCCAATTCTCTGCCATCCACAAAGTTTTCGGTGCAAGCAATGCTTCCAAGCTTCTCGCTCACCTCCCAGTCTCCCACCGTTGCGAAGCGGCGGTGACGATCTCATACGAAGCTCAAGCGAGACTTCAAGATCCGATCTACGGTTGTGTATCTCATATTTTCGCTCTCCAGCAACAGGTTATGAATCTAAGGGCTCAAGTGGCTTATTTAAGAGAACAAGCAGCTCAAATCCTTCTCAACAACTACACTACAAGAAACCCTATTGAATTACCTTACGAAAAATCTTCATTTTATTCCGACGACCCATTACTAGATCTTCAAAGTTGGCTTCTGGCGGAGAGCTGCAGCGCCGCCGCGCCGGAGTTTGAATCTGCAGCGGTGCCGTACTTTGAGATGAGCGTCGTCGATTCAAATCTCGCCGGAGATTTCTGTTGCTAA

Coding sequence (CDS)

ATGGCAGCCTCTTCTTCTTCTCCTTCTTCTCCTCCATGTGGAGCTTGCAAGTTTCTTAGAAGAAAGTGTGTCAATGGCTGCATCTTTGCTCCTTATTTCCGCCACGAGCTCGGTGCCTCCCAATTCTCTGCCATCCACAAAGTTTTCGGTGCAAGCAATGCTTCCAAGCTTCTCGCTCACCTCCCAGTCTCCCACCGTTGCGAAGCGGCGGTGACGATCTCATACGAAGCTCAAGCGAGACTTCAAGATCCGATCTACGGTTGTGTATCTCATATTTTCGCTCTCCAGCAACAGGTTATGAATCTAAGGGCTCAAGTGGCTTATTTAAGAGAACAAGCAGCTCAAATCCTTCTCAACAACTACACTACAAGAAACCCTATTGAATTACCTTACGAAAAATCTTCATTTTATTCCGACGACCCATTACTAGATCTTCAAAGTTGGCTTCTGGCGGAGAGCTGCAGCGCCGCCGCGCCGGAGTTTGAATCTGCAGCGGTGCCGTACTTTGAGATGAGCGTCGTCGATTCAAATCTCGCCGGAGATTTCTGTTGCTAA

Protein sequence

MAASSSSPSSPPCGACKFLRRKCVNGCIFAPYFRHELGASQFSAIHKVFGASNASKLLAHLPVSHRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQILLNNYTTRNPIELPYEKSSFYSDDPLLDLQSWLLAESCSAAAPEFESAAVPYFEMSVVDSNLAGDFCC

Homology

[Close]

BLAST of ClCG09G008070 vs. Swiss-Prot
Match: LBD29_ARATH (LOB domain-containing protein 29 OS=Arabidopsis thaliana GN=LBD29 PE=2 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 5.9e-49
Identity = 97/138 (70.29%), Postives = 111/138 (80.43%), Query Frame = 1


Query: 4   SSSSPSSPPCGACKFLRRKCVNGCIFAPYFRHELGASQFSAIHKVFGASNASKLLAHLPV 63
           SSSS S  PCGACKFLRRKC  GC+FAPYF HE GAS F+AIHKVFGASNASKLL+HLP+
Sbjct: 3   SSSSSSGSPCGACKFLRRKCAKGCVFAPYFCHEQGASHFAAIHKVFGASNASKLLSHLPI 62

Query: 64  SHRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQ--ILLNNY 123
           S RCEAA+TISYEAQARLQDPIYGCVSHIFALQQQV+NL+A++  L++QAAQ  I  ++ 
Sbjct: 63  SDRCEAAITISYEAQARLQDPIYGCVSHIFALQQQVVNLQAELEILKQQAAQSMIFADSP 122

Query: 124 TTRNPIELPYEKSSFYSD 140
           T+ NP       +S+Y D
Sbjct: 123 TSENP-------NSYYGD 133

[Close]

BLAST of ClCG09G008070 vs. Swiss-Prot
Match: LBD18_ARATH (LOB domain-containing protein 18 OS=Arabidopsis thaliana GN=LBD18 PE=1 SV=2)

HSP 1 Score: 170.2 bits (430), Expect = 2.0e-41
Identity = 88/163 (53.99%), Postives = 110/163 (67.48%), Query Frame = 1


Query: 4   SSSSPSSPPCGACKFLRRKCVNGCIFAPYFRHELGASQFSAIHKVFGASNASKLLAHLPV 63
           SS      PCGACKFLRRKCV GCIFAPYF  E G++ F+A+HKVFGASN SKLL H+PV
Sbjct: 29  SSGGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFGASNVSKLLLHIPV 88

Query: 64  SHRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQILLNNYTT 123
             R +A VTI YEAQAR++DPIYGCV+HIFALQQQV+NL+A+V+YL+   A + L    T
Sbjct: 89  HRRSDAVVTICYEAQARIRDPIYGCVAHIFALQQQVVNLQAEVSYLQAHLASLELPQPQT 148

Query: 124 RNPIELPYEKSSFYSDDPLLDLQSWLLAESCSAAAPEFESAAV 167
           R P  +P  +  F++  P L +    L  S S     ++ A++
Sbjct: 149 R-PQPMPQPQPLFFTPPPPLAITD--LPASVSPLPSTYDLASI 188

[Close]

BLAST of ClCG09G008070 vs. Swiss-Prot
Match: LBD17_ARATH (LOB domain-containing protein 17 OS=Arabidopsis thaliana GN=LBD17 PE=2 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 4.6e-41
Identity = 79/110 (71.82%), Postives = 91/110 (82.73%), Query Frame = 1


Query: 9   SSPPCGACKFLRRKCVNGCIFAPYFRHELGASQFSAIHKVFGASNASKLLAHLPVSHRCE 68
           S  PCGACKFLRR+CV GC+FAPYF HE GAS F+AIH+VFGASNASKLL+HLP+  R E
Sbjct: 4   SGSPCGACKFLRRRCVKGCVFAPYFCHEQGASHFAAIHQVFGASNASKLLSHLPMEDRRE 63

Query: 69  AAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQILL 119
           AA TI YEAQAR QDPIYGCVSHIF+LQQQV+NL+ Q+  L++QA Q ++
Sbjct: 64  AATTIYYEAQARRQDPIYGCVSHIFSLQQQVVNLQTQLEILKQQATQSMM 113

[Close]

BLAST of ClCG09G008070 vs. Swiss-Prot
Match: LBD14_ARATH (LOB domain-containing protein 14 OS=Arabidopsis thaliana GN=LBD14 PE=2 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 1.1e-37
Identity = 73/104 (70.19%), Postives = 86/104 (82.69%), Query Frame = 1


Query: 12  PCGACKFLRRKCVNGCIFAPYFRHELGASQFSAIHKVFGASNASKLLAHLPVSHRCEAAV 71
           PCG CKFLRRKCV GC+FAPYF +E G+S F+AIHKVFGASN SKL++HLP   RC+A  
Sbjct: 7   PCGGCKFLRRKCVEGCVFAPYFCYEEGSSNFAAIHKVFGASNFSKLISHLPDHDRCDAVR 66

Query: 72  TISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQ 116
           TISYEA +RL DPIYGCVS IF+LQQQV++L+AQV  LRE+A++
Sbjct: 67  TISYEAHSRLHDPIYGCVSQIFSLQQQVVSLQAQVVLLREEASR 110

[Close]

BLAST of ClCG09G008070 vs. Swiss-Prot
Match: LBD16_ARATH (LOB domain-containing protein 16 OS=Arabidopsis thaliana GN=LBD16 PE=1 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.4e-37
Identity = 73/110 (66.36%), Postives = 88/110 (80.00%), Query Frame = 1


Query: 5   SSSPSSPPCGACKFLRRKCVNGCIFAPYFRHELGASQFSAIHKVFGASNASKLLAHLPVS 64
           +++ +  PCGACKFLRRKC + CIFAPYF  E GA++F+AIHKVFGASN SKLL ++P+ 
Sbjct: 8   TTAGTGSPCGACKFLRRKCASDCIFAPYFSSEQGAARFAAIHKVFGASNVSKLLLNVPIH 67

Query: 65  HRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAA 115
            RCEA VTI+YEAQARL DP+YGCVSHIFALQQQV  L++QV  ++ Q A
Sbjct: 68  DRCEAVVTIAYEAQARLHDPVYGCVSHIFALQQQVAFLQSQVMQMKAQIA 117

[Close]

BLAST of ClCG09G008070 vs. TrEMBL
Match: A0A0A0K5D4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G373460 PE=4 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 1.7e-90
Identity = 169/183 (92.35%), Postives = 171/183 (93.44%), Query Frame = 1


Query: 3   ASSSSPSSPPCGACKFLRRKCVNGCIFAPYFRHELGASQFSAIHKVFGASNASKLLAHLP 62
           A+SSS S+PPCGACKFLRRKCVNGCIFAPYFRHELGAS FSAIHKVFGASNASKLLAHLP
Sbjct: 2   AASSSSSTPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLP 61

Query: 63  VSHRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQILLNNYT 122
           VSHRCEAAVTISYEAQARLQDPIYGCVSHI ALQQQVMNLRAQVAYLREQAAQILLNNYT
Sbjct: 62  VSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQILLNNYT 121

Query: 123 TRNPIELPYEKSSF-YSDDPLLDLQSWLLAESCSAAAPEFESAAVPYFEMSVVDSNLAGD 182
           TRNP EL YEKS F YSDDP LDLQSWLLAESCSA APE E AAVPYFEMSVVDS LAGD
Sbjct: 122 TRNPTELLYEKSPFCYSDDPFLDLQSWLLAESCSATAPELEPAAVPYFEMSVVDSKLAGD 181

Query: 183 FCC 185
           FCC
Sbjct: 182 FCC 184

[Close]

BLAST of ClCG09G008070 vs. TrEMBL
Match: V7BIU3_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G195000g PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 6.2e-53
Identity = 111/153 (72.55%), Postives = 120/153 (78.43%), Query Frame = 1


Query: 9   SSPPCGACKFLRRKCVNGCIFAPYFRHELGASQFSAIHKVFGASNASKLLAHLPVSHRCE 68
           S  PCGACKFLRRKCV GC+FAPYF HE GA+ F+AIHKVFGASN SKLLAHLPVS RCE
Sbjct: 4   SGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSDRCE 63

Query: 69  AAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQILLNNYTTRNPIE 128
           AAVTISYEAQARLQDPIYGCVSHIFALQQQV+NL+AQ+AYL+EQAAQ  LN     NP E
Sbjct: 64  AAVTISYEAQARLQDPIYGCVSHIFALQQQVVNLQAQLAYLKEQAAQSCLNGSVNENPSE 123

Query: 129 LPYEKSSFYSDDPLLDLQSWLLAESCSAAAPEF 162
             +EKSS        DLQSW   E+ S   PEF
Sbjct: 124 KLFEKSSAALPQ---DLQSWFQVEN-SNLGPEF 152

[Close]

BLAST of ClCG09G008070 vs. TrEMBL
Match: A0A068U5B4_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00016197001 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 8.1e-53
Identity = 116/183 (63.39%), Postives = 132/183 (72.13%), Query Frame = 1


Query: 9   SSPPCGACKFLRRKCVNGCIFAPYFRHELGASQFSAIHKVFGASNASKLLAHLPVSHRCE 68
           S  PCGACKFLRRKCV GC+FAPYF HE GA+ F+AIHKVFGASN SKLLAHLPVS RCE
Sbjct: 4   SGSPCGACKFLRRKCVRGCVFAPYFCHEQGAAHFAAIHKVFGASNVSKLLAHLPVSDRCE 63

Query: 69  AAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQILLNNY--TTRNP 128
           AAVTISYEAQARLQDPIYGCVSHIFALQQQV+NL+AQ+A+LREQAAQ L N Y  T  NP
Sbjct: 64  AAVTISYEAQARLQDPIYGCVSHIFALQQQVVNLQAQLAFLREQAAQCLANGYSNTAANP 123

Query: 129 IELPYE-KSSFYSDDPLLDLQSWLLAESCSAAAPEFESAAVP------YFEMSVVDSNLA 183
            E+  E K   YS     D+QSW   E+ S   P F+S  VP      +F+  ++     
Sbjct: 124 NEIKSEGKCLSYSP----DVQSWFQPEN-SGTIPHFDSNFVPKNGEMSHFQRGIMSQTSL 181

[Close]

BLAST of ClCG09G008070 vs. TrEMBL
Match: A0A151S8N1_CAJCA (LOB domain-containing protein 29 OS=Cajanus cajan GN=KK1_026985 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 1.8e-52
Identity = 111/153 (72.55%), Postives = 120/153 (78.43%), Query Frame = 1


Query: 9   SSPPCGACKFLRRKCVNGCIFAPYFRHELGASQFSAIHKVFGASNASKLLAHLPVSHRCE 68
           S  PCGACKFLRRKCV GC+FAPYF HE GA+ F+AIHKVFGASN SKLLAHLPVS RCE
Sbjct: 4   SGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSDRCE 63

Query: 69  AAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQILLNNYTTRNPIE 128
           AAVTISYEAQARLQDPIYGCVSHIFALQQQV+NL+AQ+AYL+EQAAQ  LN     NP E
Sbjct: 64  AAVTISYEAQARLQDPIYGCVSHIFALQQQVVNLQAQLAYLKEQAAQNCLNTSANENPSE 123

Query: 129 LPYEKSSFYSDDPLLDLQSWLLAESCSAAAPEF 162
             + KSS        DLQSW  AE+ S   PEF
Sbjct: 124 KLFGKSSAALPQ---DLQSWFQAEN-SNLGPEF 152

[Close]

BLAST of ClCG09G008070 vs. TrEMBL
Match: A0A0S3SRN6_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.08G224500 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 2.3e-52
Identity = 110/153 (71.90%), Postives = 121/153 (79.08%), Query Frame = 1


Query: 9   SSPPCGACKFLRRKCVNGCIFAPYFRHELGASQFSAIHKVFGASNASKLLAHLPVSHRCE 68
           S  PCGACKFLRRKCV GC+FAPYF HE GA+ F+AIHKVFGASN SKLLAHLPV+ RCE
Sbjct: 4   SGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVTDRCE 63

Query: 69  AAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQILLNNYTTRNPIE 128
           AAVTISYEAQARLQDPIYGCVSHIFALQQQV+NL+AQ+AYL+EQAAQ  LN   + NP E
Sbjct: 64  AAVTISYEAQARLQDPIYGCVSHIFALQQQVVNLQAQLAYLKEQAAQSCLNASVSENPSE 123

Query: 129 LPYEKSSFYSDDPLLDLQSWLLAESCSAAAPEF 162
             +EKSS        DLQSW   E+ S   PEF
Sbjct: 124 KLFEKSSGALPQ---DLQSWFQVEN-SNLGPEF 152

[Close]

BLAST of ClCG09G008070 vs. TAIR10
Match: AT3G58190.1 (AT3G58190.1 lateral organ boundaries-domain 29)

HSP 1 Score: 195.3 bits (495), Expect = 3.3e-50
Identity = 97/138 (70.29%), Postives = 111/138 (80.43%), Query Frame = 1


Query: 4   SSSSPSSPPCGACKFLRRKCVNGCIFAPYFRHELGASQFSAIHKVFGASNASKLLAHLPV 63
           SSSS S  PCGACKFLRRKC  GC+FAPYF HE GAS F+AIHKVFGASNASKLL+HLP+
Sbjct: 3   SSSSSSGSPCGACKFLRRKCAKGCVFAPYFCHEQGASHFAAIHKVFGASNASKLLSHLPI 62

Query: 64  SHRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQ--ILLNNY 123
           S RCEAA+TISYEAQARLQDPIYGCVSHIFALQQQV+NL+A++  L++QAAQ  I  ++ 
Sbjct: 63  SDRCEAAITISYEAQARLQDPIYGCVSHIFALQQQVVNLQAELEILKQQAAQSMIFADSP 122

Query: 124 TTRNPIELPYEKSSFYSD 140
           T+ NP       +S+Y D
Sbjct: 123 TSENP-------NSYYGD 133

[Close]

BLAST of ClCG09G008070 vs. TAIR10
Match: AT2G45420.1 (AT2G45420.1 LOB domain-containing protein 18)

HSP 1 Score: 170.2 bits (430), Expect = 1.2e-42
Identity = 88/163 (53.99%), Postives = 110/163 (67.48%), Query Frame = 1


Query: 4   SSSSPSSPPCGACKFLRRKCVNGCIFAPYFRHELGASQFSAIHKVFGASNASKLLAHLPV 63
           SS      PCGACKFLRRKCV GCIFAPYF  E G++ F+A+HKVFGASN SKLL H+PV
Sbjct: 29  SSGGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFGASNVSKLLLHIPV 88

Query: 64  SHRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQILLNNYTT 123
             R +A VTI YEAQAR++DPIYGCV+HIFALQQQV+NL+A+V+YL+   A + L    T
Sbjct: 89  HRRSDAVVTICYEAQARIRDPIYGCVAHIFALQQQVVNLQAEVSYLQAHLASLELPQPQT 148

Query: 124 RNPIELPYEKSSFYSDDPLLDLQSWLLAESCSAAAPEFESAAV 167
           R P  +P  +  F++  P L +    L  S S     ++ A++
Sbjct: 149 R-PQPMPQPQPLFFTPPPPLAITD--LPASVSPLPSTYDLASI 188

[Close]

BLAST of ClCG09G008070 vs. TAIR10
Match: AT2G42440.1 (AT2G42440.1 Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 169.1 bits (427), Expect = 2.6e-42
Identity = 79/110 (71.82%), Postives = 91/110 (82.73%), Query Frame = 1


Query: 9   SSPPCGACKFLRRKCVNGCIFAPYFRHELGASQFSAIHKVFGASNASKLLAHLPVSHRCE 68
           S  PCGACKFLRR+CV GC+FAPYF HE GAS F+AIH+VFGASNASKLL+HLP+  R E
Sbjct: 4   SGSPCGACKFLRRRCVKGCVFAPYFCHEQGASHFAAIHQVFGASNASKLLSHLPMEDRRE 63

Query: 69  AAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQILL 119
           AA TI YEAQAR QDPIYGCVSHIF+LQQQV+NL+ Q+  L++QA Q ++
Sbjct: 64  AATTIYYEAQARRQDPIYGCVSHIFSLQQQVVNLQTQLEILKQQATQSMM 113

[Close]

BLAST of ClCG09G008070 vs. TAIR10
Match: AT2G31310.1 (AT2G31310.1 LOB domain-containing protein 14)

HSP 1 Score: 157.9 bits (398), Expect = 5.9e-39
Identity = 73/104 (70.19%), Postives = 86/104 (82.69%), Query Frame = 1


Query: 12  PCGACKFLRRKCVNGCIFAPYFRHELGASQFSAIHKVFGASNASKLLAHLPVSHRCEAAV 71
           PCG CKFLRRKCV GC+FAPYF +E G+S F+AIHKVFGASN SKL++HLP   RC+A  
Sbjct: 7   PCGGCKFLRRKCVEGCVFAPYFCYEEGSSNFAAIHKVFGASNFSKLISHLPDHDRCDAVR 66

Query: 72  TISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQ 116
           TISYEA +RL DPIYGCVS IF+LQQQV++L+AQV  LRE+A++
Sbjct: 67  TISYEAHSRLHDPIYGCVSQIFSLQQQVVSLQAQVVLLREEASR 110

[Close]

BLAST of ClCG09G008070 vs. TAIR10
Match: AT2G42430.1 (AT2G42430.1 lateral organ boundaries-domain 16)

HSP 1 Score: 157.5 bits (397), Expect = 7.7e-39
Identity = 73/110 (66.36%), Postives = 88/110 (80.00%), Query Frame = 1


Query: 5   SSSPSSPPCGACKFLRRKCVNGCIFAPYFRHELGASQFSAIHKVFGASNASKLLAHLPVS 64
           +++ +  PCGACKFLRRKC + CIFAPYF  E GA++F+AIHKVFGASN SKLL ++P+ 
Sbjct: 8   TTAGTGSPCGACKFLRRKCASDCIFAPYFSSEQGAARFAAIHKVFGASNVSKLLLNVPIH 67

Query: 65  HRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAA 115
            RCEA VTI+YEAQARL DP+YGCVSHIFALQQQV  L++QV  ++ Q A
Sbjct: 68  DRCEAVVTIAYEAQARLHDPVYGCVSHIFALQQQVAFLQSQVMQMKAQIA 117

[Close]

BLAST of ClCG09G008070 vs. NCBI nr
Match: gi|449465252|ref|XP_004150342.1| (PREDICTED: LOB domain-containing protein 29 [Cucumis sativus])

HSP 1 Score: 340.1 bits (871), Expect = 2.4e-90
Identity = 169/183 (92.35%), Postives = 171/183 (93.44%), Query Frame = 1


Query: 3   ASSSSPSSPPCGACKFLRRKCVNGCIFAPYFRHELGASQFSAIHKVFGASNASKLLAHLP 62
           A+SSS S+PPCGACKFLRRKCVNGCIFAPYFRHELGAS FSAIHKVFGASNASKLLAHLP
Sbjct: 2   AASSSSSTPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLP 61

Query: 63  VSHRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQILLNNYT 122
           VSHRCEAAVTISYEAQARLQDPIYGCVSHI ALQQQVMNLRAQVAYLREQAAQILLNNYT
Sbjct: 62  VSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQILLNNYT 121

Query: 123 TRNPIELPYEKSSF-YSDDPLLDLQSWLLAESCSAAAPEFESAAVPYFEMSVVDSNLAGD 182
           TRNP EL YEKS F YSDDP LDLQSWLLAESCSA APE E AAVPYFEMSVVDS LAGD
Sbjct: 122 TRNPTELLYEKSPFCYSDDPFLDLQSWLLAESCSATAPELEPAAVPYFEMSVVDSKLAGD 181

Query: 183 FCC 185
           FCC
Sbjct: 182 FCC 184

[Close]

BLAST of ClCG09G008070 vs. NCBI nr
Match: gi|659092842|ref|XP_008447245.1| (PREDICTED: LOB domain-containing protein 29 [Cucumis melo])

HSP 1 Score: 336.7 bits (862), Expect = 2.6e-89
Identity = 170/185 (91.89%), Postives = 172/185 (92.97%), Query Frame = 1


Query: 1   MAASSSSPSSPPCGACKFLRRKCVNGCIFAPYFRHELGASQFSAIHKVFGASNASKLLAH 60
           MAASSSS SS PCGACKFLRRKCVNGCIFAPYFRHELGAS FSAIHKVFGASNASKLLAH
Sbjct: 1   MAASSSSSSS-PCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAH 60

Query: 61  LPVSHRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQILLNN 120
           LPVSHRCEAAVTISYEAQARLQDPIYGCVSHI ALQQQVMNLRAQVA LREQAAQILLNN
Sbjct: 61  LPVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQILLNN 120

Query: 121 YTTRNPIELPYEKSSF-YSDDPLLDLQSWLLAESCSAAAPEFESAAVPYFEMSVVDSNLA 180
           YTTRN  ELPYEKS F YSDDP LDLQSWLL ESC+AAAPEFE AAVPYFEMSV+DS LA
Sbjct: 121 YTTRNSTELPYEKSPFYYSDDPFLDLQSWLLTESCTAAAPEFEPAAVPYFEMSVIDSKLA 180

Query: 181 GDFCC 185
           GDFCC
Sbjct: 181 GDFCC 184

[Close]

BLAST of ClCG09G008070 vs. NCBI nr
Match: gi|951023437|ref|XP_014513182.1| (PREDICTED: LOB domain-containing protein 29-like [Vigna radiata var. radiata])

HSP 1 Score: 215.3 bits (547), Expect = 8.9e-53
Identity = 111/153 (72.55%), Postives = 121/153 (79.08%), Query Frame = 1


Query: 9   SSPPCGACKFLRRKCVNGCIFAPYFRHELGASQFSAIHKVFGASNASKLLAHLPVSHRCE 68
           S  PCGACKFLRRKCV GC+FAPYF HE GA+ F+AIHKVFGASN SKLLAHLPV+ RCE
Sbjct: 4   SGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVTDRCE 63

Query: 69  AAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQILLNNYTTRNPIE 128
           AAVTISYEAQARLQDPIYGCVSHIFALQQQV+NL+AQ+AYL+EQAAQ  LN   T NP E
Sbjct: 64  AAVTISYEAQARLQDPIYGCVSHIFALQQQVVNLQAQLAYLKEQAAQSCLNASVTENPSE 123

Query: 129 LPYEKSSFYSDDPLLDLQSWLLAESCSAAAPEF 162
             +EKSS        DLQSW   E+ S   PEF
Sbjct: 124 KLFEKSSASIPQ---DLQSWFQVEN-SNLGPEF 152

[Close]

BLAST of ClCG09G008070 vs. NCBI nr
Match: gi|593688579|ref|XP_007144924.1| (hypothetical protein PHAVU_007G195000g [Phaseolus vulgaris])

HSP 1 Score: 215.3 bits (547), Expect = 8.9e-53
Identity = 111/153 (72.55%), Postives = 120/153 (78.43%), Query Frame = 1


Query: 9   SSPPCGACKFLRRKCVNGCIFAPYFRHELGASQFSAIHKVFGASNASKLLAHLPVSHRCE 68
           S  PCGACKFLRRKCV GC+FAPYF HE GA+ F+AIHKVFGASN SKLLAHLPVS RCE
Sbjct: 4   SGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSDRCE 63

Query: 69  AAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQILLNNYTTRNPIE 128
           AAVTISYEAQARLQDPIYGCVSHIFALQQQV+NL+AQ+AYL+EQAAQ  LN     NP E
Sbjct: 64  AAVTISYEAQARLQDPIYGCVSHIFALQQQVVNLQAQLAYLKEQAAQSCLNGSVNENPSE 123

Query: 129 LPYEKSSFYSDDPLLDLQSWLLAESCSAAAPEF 162
             +EKSS        DLQSW   E+ S   PEF
Sbjct: 124 KLFEKSSAALPQ---DLQSWFQVEN-SNLGPEF 152

[Close]

BLAST of ClCG09G008070 vs. NCBI nr
Match: gi|661892567|emb|CDP03725.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 214.9 bits (546), Expect = 1.2e-52
Identity = 116/183 (63.39%), Postives = 132/183 (72.13%), Query Frame = 1


Query: 9   SSPPCGACKFLRRKCVNGCIFAPYFRHELGASQFSAIHKVFGASNASKLLAHLPVSHRCE 68
           S  PCGACKFLRRKCV GC+FAPYF HE GA+ F+AIHKVFGASN SKLLAHLPVS RCE
Sbjct: 4   SGSPCGACKFLRRKCVRGCVFAPYFCHEQGAAHFAAIHKVFGASNVSKLLAHLPVSDRCE 63

Query: 69  AAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQILLNNY--TTRNP 128
           AAVTISYEAQARLQDPIYGCVSHIFALQQQV+NL+AQ+A+LREQAAQ L N Y  T  NP
Sbjct: 64  AAVTISYEAQARLQDPIYGCVSHIFALQQQVVNLQAQLAFLREQAAQCLANGYSNTAANP 123

Query: 129 IELPYE-KSSFYSDDPLLDLQSWLLAESCSAAAPEFESAAVP------YFEMSVVDSNLA 183
            E+  E K   YS     D+QSW   E+ S   P F+S  VP      +F+  ++     
Sbjct: 124 NEIKSEGKCLSYSP----DVQSWFQPEN-SGTIPHFDSNFVPKNGEMSHFQRGIMSQTSL 181

The following BLAST results are available for this feature:

BLAST of ClCG09G008070 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LBD29_ARATH	5.9e-49	70.29	LOB domain-containing protein 29 OS=Arabidopsis thaliana GN=LBD29 PE=2 SV=1	[more]
LBD18_ARATH	2.0e-41	53.99	LOB domain-containing protein 18 OS=Arabidopsis thaliana GN=LBD18 PE=1 SV=2	[more]
LBD17_ARATH	4.6e-41	71.82	LOB domain-containing protein 17 OS=Arabidopsis thaliana GN=LBD17 PE=2 SV=1	[more]
LBD14_ARATH	1.1e-37	70.19	LOB domain-containing protein 14 OS=Arabidopsis thaliana GN=LBD14 PE=2 SV=1	[more]
LBD16_ARATH	1.4e-37	66.36	LOB domain-containing protein 16 OS=Arabidopsis thaliana GN=LBD16 PE=1 SV=1	[more]

BLAST of ClCG09G008070 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K5D4_CUCSA	1.7e-90	92.35	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G373460 PE=4 SV=1	[more]
V7BIU3_PHAVU	6.2e-53	72.55	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G195000g PE=4 SV=1	[more]
A0A068U5B4_COFCA	8.1e-53	63.39	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00016197001 PE=4 SV=1	[more]
A0A151S8N1_CAJCA	1.8e-52	72.55	LOB domain-containing protein 29 OS=Cajanus cajan GN=KK1_026985 PE=4 SV=1	[more]
A0A0S3SRN6_PHAAN	2.3e-52	71.90	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.08G224500 PE=...	[more]

BLAST of ClCG09G008070 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G58190.1	3.3e-50	70.29	lateral organ boundaries-domain 29	[more]
AT2G45420.1	1.2e-42	53.99	LOB domain-containing protein 18	[more]
AT2G42440.1	2.6e-42	71.82	Lateral organ boundaries (LOB) domain family protein	[more]
AT2G31310.1	5.9e-39	70.19	LOB domain-containing protein 14	[more]
AT2G42430.1	7.7e-39	66.36	lateral organ boundaries-domain 16	[more]

BLAST of ClCG09G008070 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449465252\|ref\|XP_004150342.1\|	2.4e-90	92.35	PREDICTED: LOB domain-containing protein 29 [Cucumis sativus]	[more]
gi\|659092842\|ref\|XP_008447245.1\|	2.6e-89	91.89	PREDICTED: LOB domain-containing protein 29 [Cucumis melo]	[more]
gi\|951023437\|ref\|XP_014513182.1\|	8.9e-53	72.55	PREDICTED: LOB domain-containing protein 29-like [Vigna radiata var. radiata]	[more]
gi\|593688579\|ref\|XP_007144924.1\|	8.9e-53	72.55	hypothetical protein PHAVU_007G195000g [Phaseolus vulgaris]	[more]
gi\|661892567\|emb\|CDP03725.1\|	1.2e-52	63.39	unnamed protein product [Coffea canephora]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004883	LOB

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0010311	lateral root formation
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG09G008070.1	ClCG09G008070.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	DUF260	coord: 12..110 score: 8.2
IPR004883	Lateral organ boundaries, LOB	PROFILE	PS50891	LOB	coord: 11..113 score: 21
None	No IPR available	unknown	Coil	Coil	coord: 92..112 scor
None	No IPR available	PANTHER	PTHR31529	FAMILY NOT NAMED	coord: 1..140 score: 5.7
None	No IPR available	PANTHER	PTHR31529:SF2	LOB DOMAIN-CONTAINING PROTEIN 17-RELATED	coord: 1..140 score: 5.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG09G008070	Csa7G373460	Cucumber (Chinese Long) v2	cuwcgB525
ClCG09G008070	MELO3C012741	Melon (DHL92) v3.5.1	mewcgB184
ClCG09G008070	Cla014860	Watermelon (97103) v1	wcgwmB007
ClCG09G008070	Cla97C09G170730	Watermelon (97103) v2	wcgwmbB035
ClCG09G008070	Bhi09G001006	Wax gourd	wcgwgoB062
ClCG09G008070	CSPI07G15230	Wild cucumber (PI 183967)	cpiwcgB554
ClCG09G008070	Cucsa.388160	Cucumber (Gy14) v1	cgywcgB667
ClCG09G008070	CmaCh08G002710	Cucurbita maxima (Rimu)	cmawcgB786
ClCG09G008070	CmoCh08G002690	Cucurbita moschata (Rifu)	cmowcgB785
ClCG09G008070	Lsi02G021740	Bottle gourd (USVL1VR-Ls)	lsiwcgB159
ClCG09G008070	Cp4.1LG17g05890	Cucurbita pepo (Zucchini)	cpewcgB280
ClCG09G008070	CsGy7G013680	Cucumber (Gy14) v2	cgybwcgB485
ClCG09G008070	MELO3C012741.2	Melon (DHL92) v3.6.1	medwcgB177
ClCG09G008070	Carg05095	Silver-seed gourd	carwcgB0080
ClCG09G008070	CsaV3_7G027000	Cucumber (Chinese Long) v3	cucwcgB547

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG09G008070	Melon (DHL92) v3.5.1	mewcgB170
ClCG09G008070	Cucurbita pepo (Zucchini)	cpewcgB129
ClCG09G008070	Melon (DHL92) v3.6.1	medwcgB162
ClCG09G008070	Melon (DHL92) v3.6.1	medwcgB169
ClCG09G008070	Silver-seed gourd	carwcgB0012
ClCG09G008070	Cucurbita maxima (Rimu)	cmawcgB309
ClCG09G008070	Cucurbita moschata (Rifu)	cmowcgB302