CsGy7G013680 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy7G013680
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	LOB domain-containing protein 29
Location	Chr7 : 17805168 .. 17805945 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCCTCTTCTTCTTCTTCTACTCCTCCATGTGGAGCTTGCAAATTTCTTAGAAGAAAGTGTGTCAATGGTTGCATCTTTGCTCCTTATTTCCGCCACGAGCTTGGCGCCTCTCACTTCTCCGCCATCCACAAAGTTTTTGGTGCCAGCAACGCTTCCAAGCTTCTCGCTCACCTCCCTGTCTCCCACCGTTGTGAAGCGGCCGTGACCATCTCATATGAAGCTCAAGCGAGACTTCAAGATCCGATTTATGGTTGCGTTTCTCATATTATCGCTCTCCAACAACAGGTTTTTTAATAATAAAATTTACCATATAAACGAACTCATATCATCCAACTTCAAGTTTTAGATTCCATGATAATAAACTTTATCATAATTTTTAAAGAAAAGCAAAACGATCATACTTATTTGATCTCCTCACCTTAAACTTTTGAGTTTATGTTAATTTATTCGAAACCCTAATTTTCGAAATCGAGTTTGATGAGTATTTGAATGGGTGTGGAAATTGTAGGTTATGAATCTAAGGGCTCAAGTGGCTTATTTAAGAGAACAAGCAGCACAAATTCTTCTCAACAATTATACCACAAGAAACCCTACTGAATTACTTTATGAAAAATCTCCATTTTGTTATTCCGATGACCCATTCTTAGATCTTCAAAGCTGGCTTCTGGCTGAGAGCTGCAGCGCCACCGCACCGGAGCTTGAACCTGCGGCGGTGCCGTACTTTGAGATGAGTGTCGTCGATTCAAAACTCGCCGGAGATTTCTGTTGCTAA

mRNA sequence

ATGGCAGCCTCTTCTTCTTCTTCTACTCCTCCATGTGGAGCTTGCAAATTTCTTAGAAGAAAGTGTGTCAATGGTTGCATCTTTGCTCCTTATTTCCGCCACGAGCTTGGCGCCTCTCACTTCTCCGCCATCCACAAAGTTTTTGGTGCCAGCAACGCTTCCAAGCTTCTCGCTCACCTCCCTGTCTCCCACCGTTGTGAAGCGGCCGTGACCATCTCATATGAAGCTCAAGCGAGACTTCAAGATCCGATTTATGGTTGCGTTTCTCATATTATCGCTCTCCAACAACAGGTTATGAATCTAAGGGCTCAAGTGGCTTATTTAAGAGAACAAGCAGCACAAATTCTTCTCAACAATTATACCACAAGAAACCCTACTGAATTACTTTATGAAAAATCTCCATTTTGTTATTCCGATGACCCATTCTTAGATCTTCAAAGCTGGCTTCTGGCTGAGAGCTGCAGCGCCACCGCACCGGAGCTTGAACCTGCGGCGGTGCCGTACTTTGAGATGAGTGTCGTCGATTCAAAACTCGCCGGAGATTTCTGTTGCTAA

Coding sequence (CDS)

ATGGCAGCCTCTTCTTCTTCTTCTACTCCTCCATGTGGAGCTTGCAAATTTCTTAGAAGAAAGTGTGTCAATGGTTGCATCTTTGCTCCTTATTTCCGCCACGAGCTTGGCGCCTCTCACTTCTCCGCCATCCACAAAGTTTTTGGTGCCAGCAACGCTTCCAAGCTTCTCGCTCACCTCCCTGTCTCCCACCGTTGTGAAGCGGCCGTGACCATCTCATATGAAGCTCAAGCGAGACTTCAAGATCCGATTTATGGTTGCGTTTCTCATATTATCGCTCTCCAACAACAGGTTATGAATCTAAGGGCTCAAGTGGCTTATTTAAGAGAACAAGCAGCACAAATTCTTCTCAACAATTATACCACAAGAAACCCTACTGAATTACTTTATGAAAAATCTCCATTTTGTTATTCCGATGACCCATTCTTAGATCTTCAAAGCTGGCTTCTGGCTGAGAGCTGCAGCGCCACCGCACCGGAGCTTGAACCTGCGGCGGTGCCGTACTTTGAGATGAGTGTCGTCGATTCAAAACTCGCCGGAGATTTCTGTTGCTAA

Protein sequence

MAASSSSSTPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQILLNNYTTRNPTELLYEKSPFCYSDDPFLDLQSWLLAESCSATAPELEPAAVPYFEMSVVDSKLAGDFCC

Homology

[Close]

BLAST of CsGy7G013680 vs. NCBI nr
Match: XP_004150342.1 (PREDICTED: LOB domain-containing protein 29 [Cucumis sativus] >KGN44703.1 hypothetical protein Csa_7G373460 [Cucumis sativus])

HSP 1 Score: 374.0 bits (959), Expect = 2.9e-100
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0


Query: 1   MAASSSSSTPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL 60
           MAASSSSSTPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL
Sbjct: 1   MAASSSSSTPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL 60

Query: 61  PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQILLNNY 120
           PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQILLNNY
Sbjct: 61  PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQILLNNY 120

Query: 121 TTRNPTELLYEKSPFCYSDDPFLDLQSWLLAESCSATAPELEPAAVPYFEMSVVDSKLAG 180
           TTRNPTELLYEKSPFCYSDDPFLDLQSWLLAESCSATAPELEPAAVPYFEMSVVDSKLAG
Sbjct: 121 TTRNPTELLYEKSPFCYSDDPFLDLQSWLLAESCSATAPELEPAAVPYFEMSVVDSKLAG 180

Query: 181 DFCC 185
           DFCC
Sbjct: 181 DFCC 184

[Close]

BLAST of CsGy7G013680 vs. NCBI nr
Match: XP_008447245.1 (PREDICTED: LOB domain-containing protein 29 [Cucumis melo])

HSP 1 Score: 349.4 bits (895), Expect = 7.6e-93
Identity = 173/184 (94.02%), Postives = 176/184 (95.65%), Query Frame = 0


Query: 1   MAASSSSSTPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL 60
           MAASSSSS+ PCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL
Sbjct: 1   MAASSSSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL 60

Query: 61  PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQILLNNY 120
           PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVA LREQAAQILLNNY
Sbjct: 61  PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQILLNNY 120

Query: 121 TTRNPTELLYEKSPFCYSDDPFLDLQSWLLAESCSATAPELEPAAVPYFEMSVVDSKLAG 180
           TTRN TEL YEKSPF YSDDPFLDLQSWLL ESC+A APE EPAAVPYFEMSV+DSKLAG
Sbjct: 121 TTRNSTELPYEKSPFYYSDDPFLDLQSWLLTESCTAAAPEFEPAAVPYFEMSVIDSKLAG 180

Query: 181 DFCC 185
           DFCC
Sbjct: 181 DFCC 184

[Close]

BLAST of CsGy7G013680 vs. NCBI nr
Match: XP_022156602.1 (LOB domain-containing protein 29-like [Momordica charantia])

HSP 1 Score: 285.4 bits (729), Expect = 1.4e-73
Identity = 143/184 (77.72%), Postives = 151/184 (82.07%), Query Frame = 0


Query: 1   MAASSSSSTPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL 60
           MAAS+SSS+ PCGACKFLRRKCVNGCIFAPYFRHELG SHFSA+HKVFGASNASKLLAHL
Sbjct: 1   MAASASSSSSPCGACKFLRRKCVNGCIFAPYFRHELGTSHFSAVHKVFGASNASKLLAHL 60

Query: 61  PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQILLNNY 120
           PVSHRCEAA+TISYEAQARLQDPIYGCVSHI  LQQQV+N            AQILLNNY
Sbjct: 61  PVSHRCEAAITISYEAQARLQDPIYGCVSHIFTLQQQVLNXXXXXXXXXXXXAQILLNNY 120

Query: 121 TTRNPTELLYEKSPFCYSDDPFLDLQSWLLAESCSATAPELEPAAVPYFEMSVVDSKLAG 180
           T RNP ELLY KSPF  S DP  DLQSWLLAE  SA APE EPAAVP+ EMS+ D  +AG
Sbjct: 121 TIRNPNELLYGKSPF--SGDPLQDLQSWLLAEDRSAAAPEFEPAAVPFVEMSLADPNVAG 180

Query: 181 DFCC 185
           D CC
Sbjct: 181 DCCC 182

[Close]

BLAST of CsGy7G013680 vs. NCBI nr
Match: XP_023515354.1 (LOB domain-containing protein 29-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 265.4 bits (677), Expect = 1.5e-67
Identity = 134/184 (72.83%), Postives = 142/184 (77.17%), Query Frame = 0


Query: 1   MAASSSSSTPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL 60
           MAASSSSS+PPCGACKFLRRKCVNGCIFAPYF H+LGASHFSA+HKVFGASNASKLLAHL
Sbjct: 1   MAASSSSSSPPCGACKFLRRKCVNGCIFAPYFPHDLGASHFSAVHKVFGASNASKLLAHL 60

Query: 61  PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQILLNNY 120
           PVSHR  AAVTISYEAQARLQDPIYGC+S I ALQ                 AQI+LN Y
Sbjct: 61  PVSHRSLAAVTISYEAQARLQDPIYGCISQIFALQHXXXXXXXXXXXXXXXXAQIILNGY 120

Query: 121 TTRNPTELLYEKSPFCYSDDPFLDLQSWLLAESCSATAPELEPAAVPYFEMSVVDSKLAG 180
            TRNP ELLY  S   YSD+  LDLQ+WLL ESCS  APE EP A PY +M V DS LAG
Sbjct: 121 ITRNPNELLYGNS-LSYSDEELLDLQTWLLEESCSTAAPEFEPTAGPYVQMGVADSNLAG 180

Query: 181 DFCC 185
           DFCC
Sbjct: 181 DFCC 183

[Close]

BLAST of CsGy7G013680 vs. NCBI nr
Match: XP_022959894.1 (LOB domain-containing protein 29-like [Cucurbita moschata])

HSP 1 Score: 263.5 bits (672), Expect = 5.5e-67
Identity = 132/182 (72.53%), Postives = 141/182 (77.47%), Query Frame = 0


Query: 3   ASSSSSTPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPV 62
           A+SSSS+PPCGACKFLRRKCVNGCIFAPYFRH+LGASHFSA+HKVFGASNASKLLAHLPV
Sbjct: 2   AASSSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLPV 61

Query: 63  SHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQILLNNYTT 122
           SHR  AAVTISYEAQARLQDPIYGC+S I ALQ                 AQI+LN Y T
Sbjct: 62  SHRSLAAVTISYEAQARLQDPIYGCISQIFALQHXXXXXXXXXXXXXXXXAQIILNGYIT 121

Query: 123 RNPTELLYEKSPFCYSDDPFLDLQSWLLAESCSATAPELEPAAVPYFEMSVVDSKLAGDF 182
           RNP ELLY  S   YSD+  LDLQ+WLL ESCS  APE EP A PY +M V DS LAGDF
Sbjct: 122 RNPNELLYGNS-LSYSDEELLDLQTWLLEESCSTAAPEFEPTAGPYVQMGVADSNLAGDF 181

Query: 183 CC 185
           CC
Sbjct: 182 CC 182

[Close]

BLAST of CsGy7G013680 vs. TAIR10
Match: AT3G58190.1 (lateral organ boundaries-domain 29)

HSP 1 Score: 192.2 bits (487), Expect = 2.8e-49
Identity = 95/127 (74.80%), Postives = 110/127 (86.61%), Query Frame = 0


Query: 1   MAASSSSSTPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL 60
           M +SSSSS  PCGACKFLRRKC  GC+FAPYF HE GASHF+AIHKVFGASNASKLL+HL
Sbjct: 1   MTSSSSSSGSPCGACKFLRRKCAKGCVFAPYFCHEQGASHFAAIHKVFGASNASKLLSHL 60

Query: 61  PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQ--ILLN 120
           P+S RCEAA+TISYEAQARLQDPIYGCVSHI ALQQQV+NL+A++  L++QAAQ  I  +
Sbjct: 61  PISDRCEAAITISYEAQARLQDPIYGCVSHIFALQQQVVNLQAELEILKQQAAQSMIFAD 120

Query: 121 NYTTRNP 126
           + T+ NP
Sbjct: 121 SPTSENP 127

[Close]

BLAST of CsGy7G013680 vs. TAIR10
Match: AT2G42440.1 (Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 165.6 bits (418), Expect = 2.8e-41
Identity = 79/112 (70.54%), Postives = 94/112 (83.93%), Query Frame = 0


Query: 6   SSSTPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPVSHR 65
           + S  PCGACKFLRR+CV GC+FAPYF HE GASHF+AIH+VFGASNASKLL+HLP+  R
Sbjct: 2   TGSGSPCGACKFLRRRCVKGCVFAPYFCHEQGASHFAAIHQVFGASNASKLLSHLPMEDR 61

Query: 66  CEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQILL 118
            EAA TI YEAQAR QDPIYGCVSHI +LQQQV+NL+ Q+  L++QA Q ++
Sbjct: 62  REAATTIYYEAQARRQDPIYGCVSHIFSLQQQVVNLQTQLEILKQQATQSMM 113

[Close]

BLAST of CsGy7G013680 vs. TAIR10
Match: AT2G45420.1 (LOB domain-containing protein 18)

HSP 1 Score: 154.8 bits (390), Expect = 5.0e-38
Identity = 72/104 (69.23%), Postives = 88/104 (84.62%), Query Frame = 0


Query: 12  CGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPVSHRCEAAVT 71
           CGACKFLRRKCV GCIFAPYF  E G+++F+A+HKVFGASN SKLL H+PV  R +A VT
Sbjct: 38  CGACKFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFGASNVSKLLLHIPVHRRSDAVVT 97

Query: 72  ISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQI 116
           I YEAQAR++DPIYGCV+HI ALQQQV+NL+A+V+YL+   A +
Sbjct: 98  ICYEAQARIRDPIYGCVAHIFALQQQVVNLQAEVSYLQAHLASL 141

[Close]

BLAST of CsGy7G013680 vs. TAIR10
Match: AT4G00210.1 (LOB domain-containing protein 31)

HSP 1 Score: 150.2 bits (378), Expect = 1.2e-36
Identity = 71/115 (61.74%), Postives = 90/115 (78.26%), Query Frame = 0


Query: 1   MAASSSSSTPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL 60
           M+ S++    PCGACKFLRRKCV  C+FAPYF    G SHF+A+HKVFGASNASKLL  +
Sbjct: 1   MSGSTTGCGGPCGACKFLRRKCVADCVFAPYFDSVEGTSHFTAVHKVFGASNASKLLMMI 60

Query: 61  PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQI 116
           P S R +A VT++YEA ARL+DP+YGCV HI ALQ QVMNL+A++AY++ Q + +
Sbjct: 61  PASRRLDAVVTLTYEALARLRDPVYGCVGHIFALQHQVMNLQAELAYVQTQLSTL 115

[Close]

BLAST of CsGy7G013680 vs. TAIR10
Match: AT3G03760.1 (LOB domain-containing protein 20)

HSP 1 Score: 149.1 bits (375), Expect = 2.8e-36
Identity = 70/110 (63.64%), Postives = 91/110 (82.73%), Query Frame = 0


Query: 2   AASSSSSTPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLP 61
           A + + +  PCGACKFLRRKCV+GCIFAP+F  + GA+ F+A+HKVFGASN SKLL H+P
Sbjct: 42  ATTGTGTASPCGACKFLRRKCVSGCIFAPHFGSDQGAARFAAVHKVFGASNVSKLLHHIP 101

Query: 62  VSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQ 112
           V+ R +A VTISYEAQARL DP+YGCVS I+ALQQQV +L+A+++ ++ Q
Sbjct: 102 VNRRHDAVVTISYEAQARLSDPVYGCVSTILALQQQVASLQAELSVVQSQ 151

[Close]

BLAST of CsGy7G013680 vs. Swiss-Prot
Match: sp|Q9M2J7|LBD29_ARATH (LOB domain-containing protein 29 OS=Arabidopsis thaliana OX=3702 GN=LBD29 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 5.1e-48
Identity = 95/127 (74.80%), Postives = 110/127 (86.61%), Query Frame = 0


Query: 1   MAASSSSSTPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL 60
           M +SSSSS  PCGACKFLRRKC  GC+FAPYF HE GASHF+AIHKVFGASNASKLL+HL
Sbjct: 1   MTSSSSSSGSPCGACKFLRRKCAKGCVFAPYFCHEQGASHFAAIHKVFGASNASKLLSHL 60

Query: 61  PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQ--ILLN 120
           P+S RCEAA+TISYEAQARLQDPIYGCVSHI ALQQQV+NL+A++  L++QAAQ  I  +
Sbjct: 61  PISDRCEAAITISYEAQARLQDPIYGCVSHIFALQQQVVNLQAELEILKQQAAQSMIFAD 120

Query: 121 NYTTRNP 126
           + T+ NP
Sbjct: 121 SPTSENP 127

[Close]

BLAST of CsGy7G013680 vs. Swiss-Prot
Match: sp|Q5UG13|LBD_ORYSJ (LOB domain-containing protein CRL1 OS=Oryza sativa subsp. japonica OX=39947 GN=CRL1 PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 9.3e-42
Identity = 83/104 (79.81%), Postives = 93/104 (89.42%), Query Frame = 0


Query: 11  PCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPVSHRCEAAV 70
           PCGACKFLRRKCV GC+FAPYF HE GA+HF+AIHKVFGASN SKLLAHLP++ R EAAV
Sbjct: 7   PCGACKFLRRKCVRGCVFAPYFCHEQGAAHFAAIHKVFGASNVSKLLAHLPLADRPEAAV 66

Query: 71  TISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQ 115
           TISYEAQARL+DPIYGCV+HI ALQQQVM L+AQ+A L+  AAQ
Sbjct: 67  TISYEAQARLRDPIYGCVAHIFALQQQVMTLQAQLASLKAAAAQ 110

[Close]

BLAST of CsGy7G013680 vs. Swiss-Prot
Match: sp|Q9SLB6|LBD17_ARATH (LOB domain-containing protein 17 OS=Arabidopsis thaliana OX=3702 GN=LBD17 PE=2 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 5.1e-40
Identity = 79/112 (70.54%), Postives = 94/112 (83.93%), Query Frame = 0


Query: 6   SSSTPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPVSHR 65
           + S  PCGACKFLRR+CV GC+FAPYF HE GASHF+AIH+VFGASNASKLL+HLP+  R
Sbjct: 2   TGSGSPCGACKFLRRRCVKGCVFAPYFCHEQGASHFAAIHQVFGASNASKLLSHLPMEDR 61

Query: 66  CEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQILL 118
            EAA TI YEAQAR QDPIYGCVSHI +LQQQV+NL+ Q+  L++QA Q ++
Sbjct: 62  REAATTIYYEAQARRQDPIYGCVSHIFSLQQQVVNLQTQLEILKQQATQSMM 113

[Close]

BLAST of CsGy7G013680 vs. Swiss-Prot
Match: sp|O22131|LBD18_ARATH (LOB domain-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN=LBD18 PE=1 SV=2)

HSP 1 Score: 154.8 bits (390), Expect = 9.0e-37
Identity = 72/104 (69.23%), Postives = 88/104 (84.62%), Query Frame = 0


Query: 12  CGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPVSHRCEAAVT 71
           CGACKFLRRKCV GCIFAPYF  E G+++F+A+HKVFGASN SKLL H+PV  R +A VT
Sbjct: 38  CGACKFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFGASNVSKLLLHIPVHRRSDAVVT 97

Query: 72  ISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQI 116
           I YEAQAR++DPIYGCV+HI ALQQQV+NL+A+V+YL+   A +
Sbjct: 98  ICYEAQARIRDPIYGCVAHIFALQQQVVNLQAEVSYLQAHLASL 141

[Close]

BLAST of CsGy7G013680 vs. Swiss-Prot
Match: sp|O81322|LBD31_ARATH (LOB domain-containing protein 31 OS=Arabidopsis thaliana OX=3702 GN=LBD31 PE=2 SV=2)

HSP 1 Score: 150.2 bits (378), Expect = 2.2e-35
Identity = 71/115 (61.74%), Postives = 90/115 (78.26%), Query Frame = 0


Query: 1   MAASSSSSTPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL 60
           M+ S++    PCGACKFLRRKCV  C+FAPYF    G SHF+A+HKVFGASNASKLL  +
Sbjct: 1   MSGSTTGCGGPCGACKFLRRKCVADCVFAPYFDSVEGTSHFTAVHKVFGASNASKLLMMI 60

Query: 61  PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQI 116
           P S R +A VT++YEA ARL+DP+YGCV HI ALQ QVMNL+A++AY++ Q + +
Sbjct: 61  PASRRLDAVVTLTYEALARLRDPVYGCVGHIFALQHQVMNLQAELAYVQTQLSTL 115

[Close]

BLAST of CsGy7G013680 vs. TrEMBL
Match: tr|A0A0A0K5D4|A0A0A0K5D4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G373460 PE=4 SV=1)

HSP 1 Score: 374.0 bits (959), Expect = 1.9e-100
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0


Query: 1   MAASSSSSTPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL 60
           MAASSSSSTPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL
Sbjct: 1   MAASSSSSTPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL 60

Query: 61  PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQILLNNY 120
           PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQILLNNY
Sbjct: 61  PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQILLNNY 120

Query: 121 TTRNPTELLYEKSPFCYSDDPFLDLQSWLLAESCSATAPELEPAAVPYFEMSVVDSKLAG 180
           TTRNPTELLYEKSPFCYSDDPFLDLQSWLLAESCSATAPELEPAAVPYFEMSVVDSKLAG
Sbjct: 121 TTRNPTELLYEKSPFCYSDDPFLDLQSWLLAESCSATAPELEPAAVPYFEMSVVDSKLAG 180

Query: 181 DFCC 185
           DFCC
Sbjct: 181 DFCC 184

[Close]

BLAST of CsGy7G013680 vs. TrEMBL
Match: tr|A0A1S3BGZ5|A0A1S3BGZ5_CUCME (LOB domain-containing protein 29 OS=Cucumis melo OX=3656 GN=LOC103489736 PE=4 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 5.1e-93
Identity = 173/184 (94.02%), Postives = 176/184 (95.65%), Query Frame = 0


Query: 1   MAASSSSSTPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL 60
           MAASSSSS+ PCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL
Sbjct: 1   MAASSSSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL 60

Query: 61  PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQILLNNY 120
           PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVA LREQAAQILLNNY
Sbjct: 61  PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQILLNNY 120

Query: 121 TTRNPTELLYEKSPFCYSDDPFLDLQSWLLAESCSATAPELEPAAVPYFEMSVVDSKLAG 180
           TTRN TEL YEKSPF YSDDPFLDLQSWLL ESC+A APE EPAAVPYFEMSV+DSKLAG
Sbjct: 121 TTRNSTELPYEKSPFYYSDDPFLDLQSWLLTESCTAAAPEFEPAAVPYFEMSVIDSKLAG 180

Query: 181 DFCC 185
           DFCC
Sbjct: 181 DFCC 184

[Close]

BLAST of CsGy7G013680 vs. TrEMBL
Match: tr|V7BIU3|V7BIU3_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_007G195000g PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 2.5e-52
Identity = 111/158 (70.25%), Postives = 122/158 (77.22%), Query Frame = 0


Query: 6   SSSTPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPVSHR 65
           + S  PCGACKFLRRKCV GC+FAPYF HE GA+HF+AIHKVFGASN SKLLAHLPVS R
Sbjct: 2   TGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSDR 61

Query: 66  CEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQILLNNYTTRNP 125
           CEAAVTISYEAQARLQDPIYGCVSHI ALQQQV+NL+AQ+AYL+EQAAQ  LN     NP
Sbjct: 62  CEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVNLQAQLAYLKEQAAQSCLNGSVNENP 121

Query: 126 TELLYEKSPFCYSDDPFLDLQSWLLAESCSATAPELEP 164
           +E L+EKS          DLQSW   E+ S   PE  P
Sbjct: 122 SEKLFEKSSAALPQ----DLQSWFQVEN-SNLGPEFLP 154

[Close]

BLAST of CsGy7G013680 vs. TrEMBL
Match: tr|A0A1S3V4R6|A0A1S3V4R6_VIGRR (LOB domain-containing protein 29-like OS=Vigna radiata var. radiata OX=3916 GN=LOC106771691 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 3.3e-52
Identity = 111/158 (70.25%), Postives = 123/158 (77.85%), Query Frame = 0


Query: 6   SSSTPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPVSHR 65
           + S  PCGACKFLRRKCV GC+FAPYF HE GA+HF+AIHKVFGASN SKLLAHLPV+ R
Sbjct: 2   TGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVTDR 61

Query: 66  CEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQILLNNYTTRNP 125
           CEAAVTISYEAQARLQDPIYGCVSHI ALQQQV+NL+AQ+AYL+EQAAQ  LN   T NP
Sbjct: 62  CEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVNLQAQLAYLKEQAAQSCLNASVTENP 121

Query: 126 TELLYEKSPFCYSDDPFLDLQSWLLAESCSATAPELEP 164
           +E L+EKS          DLQSW   E+ S   PE  P
Sbjct: 122 SEKLFEKSSASIPQ----DLQSWFQVEN-SNLGPEFLP 154

[Close]

BLAST of CsGy7G013680 vs. TrEMBL
Match: tr|B9T847|B9T847_RICCO (LOB domain-containing protein, putative OS=Ricinus communis OX=3988 GN=RCOM_0245570 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 5.7e-52
Identity = 114/177 (64.41%), Postives = 129/177 (72.88%), Query Frame = 0


Query: 6   SSSTPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPVSHR 65
           + S  PCGACKFLRRKCV GC+FAPYF HE GA+HF+AIHKVFGASN SKLLAHLPVS R
Sbjct: 2   TGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSDR 61

Query: 66  CEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQILLNNYTTRNP 125
           CEAAVTISYEAQARLQDPIYGCVSHI ALQQQVMNL+AQ+A L+EQAAQ L+N   T NP
Sbjct: 62  CEAAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLQAQLASLKEQAAQTLINGSATANP 121

Query: 126 TELLYEKSPFCYSDDPFLDLQSWLLAESCSATAPELEPAAVPYFEMSVVDSKLAGDF 183
            +  Y K     S  P  DLQSW  +E+ S T P+  P+     E   +D    G +
Sbjct: 122 NDKYYGKP----SSLP-QDLQSWFQSEN-SNTIPQFNPSFTTAGENGFLDPYSMGSY 172

The following BLAST results are available for this feature:

BLAST of CsGy7G013680 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004150342.1	2.9e-100	100.00	PREDICTED: LOB domain-containing protein 29 [Cucumis sativus] >KGN44703.1 hypoth...	[more]
XP_008447245.1	7.6e-93	94.02	PREDICTED: LOB domain-containing protein 29 [Cucumis melo]	[more]
XP_022156602.1	1.4e-73	77.72	LOB domain-containing protein 29-like [Momordica charantia]	[more]
XP_023515354.1	1.5e-67	72.83	LOB domain-containing protein 29-like [Cucurbita pepo subsp. pepo]	[more]
XP_022959894.1	5.5e-67	72.53	LOB domain-containing protein 29-like [Cucurbita moschata]	[more]

BLAST of CsGy7G013680 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G58190.1	2.8e-49	74.80	lateral organ boundaries-domain 29	[more]
AT2G42440.1	2.8e-41	70.54	Lateral organ boundaries (LOB) domain family protein	[more]
AT2G45420.1	5.0e-38	69.23	LOB domain-containing protein 18	[more]
AT4G00210.1	1.2e-36	61.74	LOB domain-containing protein 31	[more]
AT3G03760.1	2.8e-36	63.64	LOB domain-containing protein 20	[more]

BLAST of CsGy7G013680 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9M2J7\|LBD29_ARATH	5.1e-48	74.80	LOB domain-containing protein 29 OS=Arabidopsis thaliana OX=3702 GN=LBD29 PE=2 S...	[more]
sp\|Q5UG13\|LBD_ORYSJ	9.3e-42	79.81	LOB domain-containing protein CRL1 OS=Oryza sativa subsp. japonica OX=39947 GN=C...	[more]
sp\|Q9SLB6\|LBD17_ARATH	5.1e-40	70.54	LOB domain-containing protein 17 OS=Arabidopsis thaliana OX=3702 GN=LBD17 PE=2 S...	[more]
sp\|O22131\|LBD18_ARATH	9.0e-37	69.23	LOB domain-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN=LBD18 PE=1 S...	[more]
sp\|O81322\|LBD31_ARATH	2.2e-35	61.74	LOB domain-containing protein 31 OS=Arabidopsis thaliana OX=3702 GN=LBD31 PE=2 S...	[more]

BLAST of CsGy7G013680 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K5D4\|A0A0A0K5D4_CUCSA	1.9e-100	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G373460 PE=4 SV=1	[more]
tr\|A0A1S3BGZ5\|A0A1S3BGZ5_CUCME	5.1e-93	94.02	LOB domain-containing protein 29 OS=Cucumis melo OX=3656 GN=LOC103489736 PE=4 SV...	[more]
tr\|V7BIU3\|V7BIU3_PHAVU	2.5e-52	70.25	Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_007G195000g PE=4 ...	[more]
tr\|A0A1S3V4R6\|A0A1S3V4R6_VIGRR	3.3e-52	70.25	LOB domain-containing protein 29-like OS=Vigna radiata var. radiata OX=3916 GN=L...	[more]
tr\|B9T847\|B9T847_RICCO	5.7e-52	64.41	LOB domain-containing protein, putative OS=Ricinus communis OX=3988 GN=RCOM_0245...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004883	LOB

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy7G013680.1	CsGy7G013680.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 91..111
None	No IPR available	PANTHER	PTHR31529:SF2	SUBFAMILY NOT NAMED	coord: 8..165
None	No IPR available	PANTHER	PTHR31529	FAMILY NOT NAMED	coord: 8..165
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 11..108 e-value: 6.8E-35 score: 119.5
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 10..112 score: 21.478

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy7G013680	Cla014860	Watermelon (97103) v1	cgybwmB529
CsGy7G013680	Csa7G373460	Cucumber (Chinese Long) v2	cgybcuB323
CsGy7G013680	MELO3C012741	Melon (DHL92) v3.5.1	cgybmeB462
CsGy7G013680	ClCG09G008070	Watermelon (Charleston Gray)	cgybwcgB485
CsGy7G013680	CSPI07G15230	Wild cucumber (PI 183967)	cgybcpiB331
CsGy7G013680	CmaCh08G002710	Cucurbita maxima (Rimu)	cgybcmaB973
CsGy7G013680	CmoCh08G002690	Cucurbita moschata (Rifu)	cgybcmoB955
CsGy7G013680	Lsi02G021740	Bottle gourd (USVL1VR-Ls)	cgyblsiB472
CsGy7G013680	Cp4.1LG17g05890	Cucurbita pepo (Zucchini)	cgybcpeB932
CsGy7G013680	MELO3C012741.2	Melon (DHL92) v3.6.1	cgybmedB460
CsGy7G013680	CsaV3_7G027000	Cucumber (Chinese Long) v3	cgybcucB347
CsGy7G013680	Cla97C09G170730	Watermelon (97103) v2	cgybwmbB542
CsGy7G013680	Bhi09G001007	Wax gourd	cgybwgoB674
CsGy7G013680	Carg05095	Silver-seed gourd	carcgybB0095

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy7G013680	Cucurbita maxima (Rimu)	cgybcmaB920
CsGy7G013680	Cucurbita moschata (Rifu)	cgybcmoB903
CsGy7G013680	Cucurbita pepo (Zucchini)	cgybcpeB900
CsGy7G013680	Melon (DHL92) v3.5.1	cgybmeB478
CsGy7G013680	Melon (DHL92) v3.6.1	cgybmedB456
CsGy7G013680	Melon (DHL92) v3.6.1	cgybmedB474
CsGy7G013680	Silver-seed gourd	carcgybB0012