MELO3C011806 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C011806
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	F-box family protein
Location	chr10 : 4683350 .. 4684226 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAACCAATTCAAAAGAAAATCAGAAGTTTTGAACTCTCAGATTTCAACGTAAGTTTAACTCTTCGATATTGTGTTTATGGAATTAATTAGTTGTTTAGTTATTATTAATACAATTGTTAATTTTCTTTTCTTCTGATTTATTTTCATGCAGAAGATTGACAAAAAAGATGTGCAAACCCCTTTCTTCACCCCTCATTGTATCACTCCCGAACGATCTATTAATCGAAGTTCTTGCAAAAGTCGCATCTTCTTCTTACGTTGACTTAGTACGAGCCAAATTAGCCACCAAACTTTTCCTCCATGCATCAAACGACCGATACATATTCCGACACGTGTCGCTTAAAAACGAAAGCTTTAGGAACCTTCTATGGAACAACACCCCCAAATTTTGGTCCTTTGTAGAAACTTGCAACAACAACGAAAATCCGGAGAGTCTGTATCGAAAAGGAATGTTGGAATTTTTCACTCACTGTAACGAAGCTTCTGGATTGGCTTGTTTAAAACTATCGGCTCAAAAAGGGTACGTGGATGCTTGTTATGTATATGGCGTCGTTCTGTACGCAGCCGATTTGGTAGATGAAGGACTTGCATATTTGAAGATGTGTGAGGTGAAATTAAGGAATAAGATGGCGGAATGTCGTCGGAGAGTTAAGGAGTTTGTTTGGTATTTTTGGGTAAAGAATAAGATTTCAGTATCGTCGAAAAAAAATTGCAATAACAAAATTAATTGTAGGGTTAATGAGAGAAGAAATGGTTGGGACTGGAAAGATGAAGATGACTATTATGGAGAACACACGTGTGAAGAGTGTAAATGGAAGAACGAGGTTTCGAGATTTTGTAATATGTTGAGAAGCGGAGGGTACAGTAATTAA

mRNA sequence

ATGGCGAACCAATTCAAAAGAAAATCAGAAGTTTTGAACTCTCAGATTTCAACAAGATTGACAAAAAAGATGTGCAAACCCCTTTCTTCACCCCTCATTGTATCACTCCCGAACGATCTATTAATCGAAGTTCTTGCAAAAGTCGCATCTTCTTCTTACGTTGACTTAGTACGAGCCAAATTAGCCACCAAACTTTTCCTCCATGCATCAAACGACCGATACATATTCCGACACGTGTCGCTTAAAAACGAAAGCTTTAGGAACCTTCTATGGAACAACACCCCCAAATTTTGGTCCTTTGTAGAAACTTGCAACAACAACGAAAATCCGGAGAGTCTGTATCGAAAAGGAATGTTGGAATTTTTCACTCACTGTAACGAAGCTTCTGGATTGGCTTGTTTAAAACTATCGGCTCAAAAAGGGTACGTGGATGCTTGTTATGTATATGGCGTCGTTCTGTACGCAGCCGATTTGGTAGATGAAGGACTTGCATATTTGAAGATGTGTGAGGTGAAATTAAGGAATAAGATGGCGGAATGTCGTCGGAGAGTTAAGGAGTTTGTTTGGTATTTTTGGGTAAAGAATAAGATTTCAGTATCGTCGAAAAAAAATTGCAATAACAAAATTAATTGTAGGGTTAATGAGAGAAGAAATGGTTGGGACTGGAAAGATGAAGATGACTATTATGGAGAACACACGTGTGAAGAGTGTAAATGGAAGAACGAGGTTTCGAGATTTTGTAATATGTTGAGAAGCGGAGGGTACAGTAATTAA

Coding sequence (CDS)

ATGGCGAACCAATTCAAAAGAAAATCAGAAGTTTTGAACTCTCAGATTTCAACAAGATTGACAAAAAAGATGTGCAAACCCCTTTCTTCACCCCTCATTGTATCACTCCCGAACGATCTATTAATCGAAGTTCTTGCAAAAGTCGCATCTTCTTCTTACGTTGACTTAGTACGAGCCAAATTAGCCACCAAACTTTTCCTCCATGCATCAAACGACCGATACATATTCCGACACGTGTCGCTTAAAAACGAAAGCTTTAGGAACCTTCTATGGAACAACACCCCCAAATTTTGGTCCTTTGTAGAAACTTGCAACAACAACGAAAATCCGGAGAGTCTGTATCGAAAAGGAATGTTGGAATTTTTCACTCACTGTAACGAAGCTTCTGGATTGGCTTGTTTAAAACTATCGGCTCAAAAAGGGTACGTGGATGCTTGTTATGTATATGGCGTCGTTCTGTACGCAGCCGATTTGGTAGATGAAGGACTTGCATATTTGAAGATGTGTGAGGTGAAATTAAGGAATAAGATGGCGGAATGTCGTCGGAGAGTTAAGGAGTTTGTTTGGTATTTTTGGGTAAAGAATAAGATTTCAGTATCGTCGAAAAAAAATTGCAATAACAAAATTAATTGTAGGGTTAATGAGAGAAGAAATGGTTGGGACTGGAAAGATGAAGATGACTATTATGGAGAACACACGTGTGAAGAGTGTAAATGGAAGAACGAGGTTTCGAGATTTTGTAATATGTTGAGAAGCGGAGGGTACAGTAATTAA

Protein sequence

MANQFKRKSEVLNSQISTRLTKKMCKPLSSPLIVSLPNDLLIEVLAKVASSSYVDLVRAKLATKLFLHASNDRYIFRHVSLKNESFRNLLWNNTPKFWSFVETCNNNENPESLYRKGMLEFFTHCNEASGLACLKLSAQKGYVDACYVYGVVLYAADLVDEGLAYLKMCEVKLRNKMAECRRRVKEFVWYFWVKNKISVSSKKNCNNKINCRVNERRNGWDWKDEDDYYGEHTCEECKWKNEVSRFCNMLRSGGYSN*

Homology

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BLAST of MELO3C011806 vs. Swiss-Prot
Match: FB79_ARATH (Putative F-box protein At1g67623 OS=Arabidopsis thaliana GN=At1g67623 PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.4e-16
Identity = 64/225 (28.44%), Postives = 103/225 (45.78%), Query Frame = 1


Query: 26  KPLSSPLIVSLPNDLLIEVLAKVASSSYVDLVRAKLATKLFLHASNDRYIFRHVSLKNES 85
           K  +S  + SLP DLL+E+ +   +SS   +   +L +K F    +++Y+F  +SLK   
Sbjct: 17  KTKASLCLDSLPEDLLVEISSCTGASSLSAVRNLRLVSKSFRRICDEKYVFYRLSLKEIE 76

Query: 86  FRNLLWNNTPKFWSFVETCNNNENPESLYRKGMLEFFTHCNEASGLACLKLSAQKGYVDA 145
           F  L W+       F+E C  + NPE+L++KG + +F    +  GL  L  +A+KG  +A
Sbjct: 77  F--LPWHENSA--KFIERCTESRNPEALFQKGFINYFRDKLQDRGLEYLAEAAEKGIKEA 136

Query: 146 CYVYGVVL--YAADLVDEGL----AYLKMCEVKLRNKMAECRRRVKEFVWYFWVKNK--- 205
            YVYGV+L         +G     + +K       N++ E R ++++  + FW  +    
Sbjct: 137 KYVYGVILICLGGKTKQKGFEILSSVIKQLMSTTMNELVEFRYKIQKIRYGFWWSDNTVV 196

Query: 206 -----ISVSSKKNCNNKINCRVNERRNGWD-WKDEDDYYGEHTCE 236
                  VS K  C+ K    +     GW  + DE D      CE
Sbjct: 197 EQLKTAYVSEKCKCDCKTRMLLLVMNRGWYLFGDETDLDFSSACE 237

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BLAST of MELO3C011806 vs. TrEMBL
Match: A0A0A0LS96_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025065 PE=4 SV=1)

HSP 1 Score: 367.1 bits (941), Expect = 1.8e-98
Identity = 182/259 (70.27%), Postives = 209/259 (80.69%), Query Frame = 1


Query: 3   NQFKRKSEVLNSQISTRLTKKMCKPLSSPLIVSLPNDLLIEVLAKVASSSYVDLVRAKLA 62
           NQ KR S  L++QIS    K     LS  +I SLPNDLL EVLAKVA+SSY+DL++AKLA
Sbjct: 4   NQPKRDSVALDTQISRITEKNQIDVLSPTVIKSLPNDLLTEVLAKVATSSYIDLIQAKLA 63

Query: 63  TKLFLHASNDRYIFRHVSLKNESFRNLLWNNTPKFWSFVETCNNNENPESLYRKGMLEFF 122
           TK FL ASNDRYIF+HVSL N  FRNLLWNN+PKFWSF+ETCNN+ENPESLYRKGMLEFF
Sbjct: 64  TKHFLEASNDRYIFQHVSLGN--FRNLLWNNSPKFWSFMETCNNSENPESLYRKGMLEFF 123

Query: 123 THCNEASGLACLKLSAQKGYVDACYVYGVVLYAADLVDEGLAYLKMCEVKLRNKMAECRR 182
           THC EASG+A LK SAQKGYVDACYV+GV+LYA++L DEGL +LK  EVKL NKM ECR+
Sbjct: 124 THCKEASGMAYLKRSAQKGYVDACYVFGVILYASNLKDEGLEFLKNNEVKLGNKMIECRQ 183

Query: 183 RVKEFVWYFWVKNKISVSS-----KKNCNNKINCRVNERRNGWDWKDEDDYYGEHTCEEC 242
           RVKEFV Y W+KNKIS+S       + C+  INCRVNE+ N WD KDEDDYYG++TCEEC
Sbjct: 184 RVKEFVSYIWIKNKISLSEGDSSYGRKCDKNINCRVNEKINVWDSKDEDDYYGKYTCEEC 243

Query: 243 KWKNEVSRFCNMLRSGGYS 257
           KW NEV RFC MLR+G +S
Sbjct: 244 KWNNEVLRFCKMLRTGRFS 260

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BLAST of MELO3C011806 vs. TrEMBL
Match: B9I6Z5_POPTR (F-box family protein OS=Populus trichocarpa GN=POPTR_0013s01020g PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.2e-30
Identity = 87/243 (35.80%), Postives = 131/243 (53.91%), Query Frame = 1


Query: 20  LTKKMCKPLSSPLIVSLPNDLLIEVLAKVASSSYVDLVRAKLATKLFLHASNDRYIFRHV 79
           +TK   K          P DLL EVLA+VAS+S  DL  AKL+ K FL A+++ YIF H+
Sbjct: 1   MTKGRRKTSRHEFFKYFPKDLLTEVLARVASASISDLFTAKLSCKEFLEAASENYIFEHI 60

Query: 80  SLKNESFRNLLWNNTPKFWSFVETCNNNENPESLYRKGMLEFFTHCNEASGLACLKLSAQ 139
           ++  E    + W  +    SF+  C  N NPE+L+R+GM+EFF+     SG   LK +A+
Sbjct: 61  TI--EKLPVIPWRISHGASSFLARCKENGNPEALFRQGMVEFFSSNKPESGFQHLKNAAR 120

Query: 140 KGYVDACYVYGVVL--YAADLVDEGLAYL-KMCEVKLRNK-MAECRRRVKEFVWYFWVKN 199
           KG+V+A Y  GV+L  +      EG+  L  +   K R++ + ECR ++KE +   W+  
Sbjct: 121 KGHVEAIYTCGVILVCHGGQFKQEGIELLSSLKNYKSRHRTIKECRDKIKEILQSMWIDR 180

Query: 200 K---ISVSSKKNCNNKINCRVNERRNGWDWKDEDDYYGEHTCEECKWKNEVSRFCNMLRS 256
           +   I     K+     NC    +R    W DE++Y    TC+ C W +E + FC +LR+
Sbjct: 181 REAGIGPEEPKSHGRTCNCSKFNKRG---WIDEEEY---TTCDYCVWDHEATLFCKILRA 235

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BLAST of MELO3C011806 vs. TrEMBL
Match: A5AV49_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_039291 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.6e-30
Identity = 84/232 (36.21%), Postives = 127/232 (54.74%), Query Frame = 1


Query: 33  IVSLPNDLLIEVLAKVASSSYVDLVRAKLATKLFLHASNDRYIFRHVSLKNESFRNL-LW 92
           I SL +DLLIEVL +VASSS+ DL  AKL+ + FL AS D ++ +++S+  E F  +  W
Sbjct: 15  IESLSSDLLIEVLTRVASSSFTDLFNAKLSCRNFLEASKDTFVMKNISI--EKFPTIPWW 74

Query: 93  NNTPKFWSFVETCNNNENPESLYRKGMLEFFTHCNEASGLACLKLSAQKGYVDACYVYGV 152
               +  SF++ C  + NPE LYR+GM+EFF+     S    LK + + G+++A YVYG+
Sbjct: 75  QVKDEVSSFLKACKESGNPEVLYRQGMMEFFSWKKVESXEEYLKRAMEMGHMEASYVYGI 134

Query: 153 VLYAA---DLVDEGLAYLKMCEVKLRNKMAECRRRVKEFVWYFWVKNKISVSSK------ 212
           +L         ++G+  L    VK   K+ ECR+R + F    W++N I    +      
Sbjct: 135 ILLCKGGDSNEEQGMKLLN--AVKKSRKLGECRKRTRAFTLSMWIRNPIVKCQELTSYHA 194

Query: 213 KNCNNKINCRVNERRNGWDWKDED---DYYGEHTCEECKWKNEVSRFCNMLR 252
             C  + N  +  +R GW W ++D   D    + CE C W +EVS FC + R
Sbjct: 195 NTCGRRNNGGIGGKR-GWPWIEDDEDKDVEEVNYCEACIWDDEVSLFCKLFR 241

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BLAST of MELO3C011806 vs. TrEMBL
Match: A0A0B2P0Z6_GLYSO (Putative F-box protein OS=Glycine soja GN=glysoja_009836 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 6.7e-29
Identity = 83/229 (36.24%), Postives = 123/229 (53.71%), Query Frame = 1


Query: 28  LSSPLIVSLPNDLLIEVLAKVASSSYVDLVRAKLATKLFLHASNDRYIFRHVSLKNESFR 87
           +S   I SLP +L +E+ AKVA+ S  D    KL  K FLHA+ D Y++RH S++N +  
Sbjct: 17  VSVTTIKSLPKELQVEIFAKVATRSIFDHCMIKLCCKEFLHAAEDDYVYRHASMENFALV 76

Query: 88  NLLWNNTPKFWSFVETCNNNENPESLYRKGMLEFFTHCNEASGLACLKLSAQKGYVDACY 147
            L W    K  SF++ C  + N E LYR+GML++FT      GL  LK +A +G+ DA Y
Sbjct: 77  PLPWFTGNKESSFLKRCRESGNSEILYREGMLQYFTSSRVELGLKNLKEAALEGHDDAKY 136

Query: 148 VYGVVLYAADLVDEG---LAYLKMCEVKLRNKMAECRRRVKEFVWYFWVKN----KISVS 207
           VY ++L   +  DEG     +   C +K    +  CR+RVK FV   W+KN    K S  
Sbjct: 137 VYCMLLMCGE--DEGQRKQGFDLFCSLKESTSVIRCRKRVKSFVRSMWLKNKPNGKSSFC 196

Query: 208 SKKNCNNKINCRVNERRNGWDWKDEDDYYGEHTCEECKWKNEVSRFCNM 250
               C+++   ++++R     W   +D  G  +C+ C   +E+  FCNM
Sbjct: 197 GSGTCDSERQKQLSKR-----WSSFEDKDGGISCQRCGADHELGFFCNM 238

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BLAST of MELO3C011806 vs. TrEMBL
Match: I1KMZ2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_07G247800 PE=4 SV=2)

HSP 1 Score: 136.0 bits (341), Expect = 6.7e-29
Identity = 83/229 (36.24%), Postives = 123/229 (53.71%), Query Frame = 1


Query: 28  LSSPLIVSLPNDLLIEVLAKVASSSYVDLVRAKLATKLFLHASNDRYIFRHVSLKNESFR 87
           +S   I SLP +L +E+ AKVA+ S  D    KL  K FLHA+ D Y++RH S++N +  
Sbjct: 17  VSVTTIKSLPKELQVEIFAKVATRSIFDHCMIKLCCKEFLHAAEDDYVYRHASMENFALV 76

Query: 88  NLLWNNTPKFWSFVETCNNNENPESLYRKGMLEFFTHCNEASGLACLKLSAQKGYVDACY 147
            L W    K  SF++ C  + N E LYR+GML++FT      GL  LK +A +G+ DA Y
Sbjct: 77  PLPWFTGNKESSFLKRCRESGNSEILYREGMLQYFTSSRVELGLKNLKEAALEGHDDAKY 136

Query: 148 VYGVVLYAADLVDEG---LAYLKMCEVKLRNKMAECRRRVKEFVWYFWVKN----KISVS 207
           VY ++L   +  DEG     +   C +K    +  CR+RVK FV   W+KN    K S  
Sbjct: 137 VYCMLLMCGE--DEGQRKQGFDLFCSLKESTSVIRCRKRVKSFVRSMWLKNKPNGKSSFC 196

Query: 208 SKKNCNNKINCRVNERRNGWDWKDEDDYYGEHTCEECKWKNEVSRFCNM 250
               C+++   ++++R     W   +D  G  +C+ C   +E+  FCNM
Sbjct: 197 GSGTCDSERQKQLSKR-----WSSFEDKDGGISCQRCGADHELGFFCNM 238

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BLAST of MELO3C011806 vs. TAIR10
Match: AT1G67623.1 (AT1G67623.1 F-box family protein)

HSP 1 Score: 87.4 bits (215), Expect = 1.4e-17
Identity = 64/225 (28.44%), Postives = 103/225 (45.78%), Query Frame = 1


Query: 26  KPLSSPLIVSLPNDLLIEVLAKVASSSYVDLVRAKLATKLFLHASNDRYIFRHVSLKNES 85
           K  +S  + SLP DLL+E+ +   +SS   +   +L +K F    +++Y+F  +SLK   
Sbjct: 17  KTKASLCLDSLPEDLLVEISSCTGASSLSAVRNLRLVSKSFRRICDEKYVFYRLSLKEIE 76

Query: 86  FRNLLWNNTPKFWSFVETCNNNENPESLYRKGMLEFFTHCNEASGLACLKLSAQKGYVDA 145
           F  L W+       F+E C  + NPE+L++KG + +F    +  GL  L  +A+KG  +A
Sbjct: 77  F--LPWHENSA--KFIERCTESRNPEALFQKGFINYFRDKLQDRGLEYLAEAAEKGIKEA 136

Query: 146 CYVYGVVL--YAADLVDEGL----AYLKMCEVKLRNKMAECRRRVKEFVWYFWVKNK--- 205
            YVYGV+L         +G     + +K       N++ E R ++++  + FW  +    
Sbjct: 137 KYVYGVILICLGGKTKQKGFEILSSVIKQLMSTTMNELVEFRYKIQKIRYGFWWSDNTVV 196

Query: 206 -----ISVSSKKNCNNKINCRVNERRNGWD-WKDEDDYYGEHTCE 236
                  VS K  C+ K    +     GW  + DE D      CE
Sbjct: 197 EQLKTAYVSEKCKCDCKTRMLLLVMNRGWYLFGDETDLDFSSACE 237

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BLAST of MELO3C011806 vs. NCBI nr
Match: gi|449435498|ref|XP_004135532.1| (PREDICTED: putative F-box protein At1g67623 [Cucumis sativus])

HSP 1 Score: 424.1 bits (1089), Expect = 1.8e-115
Identity = 207/258 (80.23%), Postives = 231/258 (89.53%), Query Frame = 1


Query: 1   MANQFKRKSEV-LNSQISTRLTKKMCKPLSSPLIVSLPNDLLIEVLAKVASSSYVDLVRA 60
           MANQ KRKSE   NSQISTR TKKMC+P SS LIVSLPNDLLIEVLAKVA+SSY+DLV+A
Sbjct: 1   MANQLKRKSEPSFNSQISTR-TKKMCRPFSSSLIVSLPNDLLIEVLAKVAASSYIDLVQA 60

Query: 61  KLATKLFLHASNDRYIFRHVSLKNESFRNLLWNNTPKFWSFVETCNNNENPESLYRKGML 120
           KLATKLFLHASND YIF+HVSL+N+SFRNLLWNNTP+  SF+ET NNNENPESLYRKG +
Sbjct: 61  KLATKLFLHASNDGYIFQHVSLENKSFRNLLWNNTPQSRSFMETLNNNENPESLYRKGTM 120

Query: 121 EFFTHCNEASGLACLKLSAQKGYVDACYVYGVVLYAADLVDEGLAYLKMCEVKLRNKMAE 180
           EFF+H  EASGL+ LK SAQKGYVDACYVYGVV+YAA+L +EG+ YLKMCE KL NKMAE
Sbjct: 121 EFFSHGKEASGLSYLKQSAQKGYVDACYVYGVVMYAANLKEEGVEYLKMCEAKLGNKMAE 180

Query: 181 CRRRVKEFVWYFWVKNKISVSSKKNCNNKINCRVNERRNGWDWKDEDDYYGEHTCEECKW 240
           CRRRVKEFVWYFW+KN+IS+ SK+ C+N +NC+VNER NGWDWKDEDDYYGEHTCE+CKW
Sbjct: 181 CRRRVKEFVWYFWIKNRISM-SKEICSN-VNCKVNERSNGWDWKDEDDYYGEHTCEQCKW 240

Query: 241 KNEVSRFCNMLRSGGYSN 258
            NEV RFCNMLR GGYSN
Sbjct: 241 SNEVLRFCNMLRRGGYSN 255

[Close]

BLAST of MELO3C011806 vs. NCBI nr
Match: gi|449439561|ref|XP_004137554.1| (PREDICTED: putative F-box protein At1g67623 [Cucumis sativus])

HSP 1 Score: 367.1 bits (941), Expect = 2.6e-98
Identity = 182/259 (70.27%), Postives = 209/259 (80.69%), Query Frame = 1


Query: 3   NQFKRKSEVLNSQISTRLTKKMCKPLSSPLIVSLPNDLLIEVLAKVASSSYVDLVRAKLA 62
           NQ KR S  L++QIS    K     LS  +I SLPNDLL EVLAKVA+SSY+DL++AKLA
Sbjct: 4   NQPKRDSVALDTQISRITEKNQIDVLSPTVIKSLPNDLLTEVLAKVATSSYIDLIQAKLA 63

Query: 63  TKLFLHASNDRYIFRHVSLKNESFRNLLWNNTPKFWSFVETCNNNENPESLYRKGMLEFF 122
           TK FL ASNDRYIF+HVSL N  FRNLLWNN+PKFWSF+ETCNN+ENPESLYRKGMLEFF
Sbjct: 64  TKHFLEASNDRYIFQHVSLGN--FRNLLWNNSPKFWSFMETCNNSENPESLYRKGMLEFF 123

Query: 123 THCNEASGLACLKLSAQKGYVDACYVYGVVLYAADLVDEGLAYLKMCEVKLRNKMAECRR 182
           THC EASG+A LK SAQKGYVDACYV+GV+LYA++L DEGL +LK  EVKL NKM ECR+
Sbjct: 124 THCKEASGMAYLKRSAQKGYVDACYVFGVILYASNLKDEGLEFLKNNEVKLGNKMIECRQ 183

Query: 183 RVKEFVWYFWVKNKISVSS-----KKNCNNKINCRVNERRNGWDWKDEDDYYGEHTCEEC 242
           RVKEFV Y W+KNKIS+S       + C+  INCRVNE+ N WD KDEDDYYG++TCEEC
Sbjct: 184 RVKEFVSYIWIKNKISLSEGDSSYGRKCDKNINCRVNEKINVWDSKDEDDYYGKYTCEEC 243

Query: 243 KWKNEVSRFCNMLRSGGYS 257
           KW NEV RFC MLR+G +S
Sbjct: 244 KWNNEVLRFCKMLRTGRFS 260

[Close]

BLAST of MELO3C011806 vs. NCBI nr
Match: gi|659107472|ref|XP_008453691.1| (PREDICTED: putative F-box protein At1g67623 [Cucumis melo])

HSP 1 Score: 364.4 bits (934), Expect = 1.7e-97
Identity = 182/260 (70.00%), Postives = 202/260 (77.69%), Query Frame = 1


Query: 1   MANQFKRKSEVLNSQISTRLTKKMCKPLSSPLIVSLPNDLLIEVLAKVASSSYVDLVRAK 60
           MAN  K KS   ++ IS    K     LS  +I SLPNDLL EVLAKVA+SSYVDLV+AK
Sbjct: 1   MANHPKTKSLPFHTLISRTTQKNRTGVLSPTVIKSLPNDLLTEVLAKVAASSYVDLVQAK 60

Query: 61  LATKLFLHASNDRYIFRHVSLKNESFRNLLWNNTPKFWSFVETCNNNENPESLYRKGMLE 120
           LATK FL AS DRYIF+HVSL N  F N LWNN+P+FWSF+ETCNNNENPESLYRKGMLE
Sbjct: 61  LATKQFLEASKDRYIFQHVSLGN--FENHLWNNSPEFWSFIETCNNNENPESLYRKGMLE 120

Query: 121 FFTHCNEASGLACLKLSAQKGYVDACYVYGVVLYAADLVDEGLAYLKMCEVKLRNKMAEC 180
           FFTHC EASGLA LKLSAQKGYVDACYV  V+LYA+   DEG  +LK  E KLRNKMAEC
Sbjct: 121 FFTHCKEASGLAYLKLSAQKGYVDACYVCSVILYASKAKDEGFEFLKNHEAKLRNKMAEC 180

Query: 181 RRRVKEFVWYFWVKNKISVSSK----KNCNNKINCRVNERRNGWDWKDEDDYYGEHTCEE 240
           R RVK FV Y W+KN+IS S +    + C+  INCRVNERRN WDWKDEDDYYGE+TCE+
Sbjct: 181 RWRVKRFVSYLWIKNRISSSGEDPNDRKCDKNINCRVNERRNSWDWKDEDDYYGEYTCEK 240

Query: 241 CKWKNEVSRFCNMLRSGGYS 257
           CKW NEV RFC MLR+G YS
Sbjct: 241 CKWNNEVFRFCKMLRTGRYS 258

[Close]

BLAST of MELO3C011806 vs. NCBI nr
Match: gi|731376767|ref|XP_010656578.1| (PREDICTED: putative F-box protein At1g67623 [Vitis vinifera])

HSP 1 Score: 147.1 bits (370), Expect = 4.2e-32
Identity = 86/246 (34.96%), Postives = 134/246 (54.47%), Query Frame = 1


Query: 22  KKMCKPLSSPLIVSLPNDLLIEVLAKVASSSYVDLVRAKLATKLFLHASNDRYIFRHVSL 81
           KK  +      I  LP+DLLIEVL +VA+SS+ DL  AKL+ + FL AS+D++I +++S+
Sbjct: 4   KKTKRNSHGSTIEYLPSDLLIEVLTRVATSSFTDLFNAKLSCRNFLEASDDKFIMKNISI 63

Query: 82  KNESFRNL-LWNNTPKFWSFVETCNNNENPESLYRKGMLEFFTHCNEASGLACLKLSAQK 141
             E F  +  W    +  SF++ C  + NPE+LYR+GM+EFF+     SG   LK + + 
Sbjct: 64  --EKFPAIPWWQVKDEVSSFLKACKESGNPEALYRQGMMEFFSWKKVESGEEYLKRALEM 123

Query: 142 GYVDACYVYGVVLY---AADLVDEGLAYLKMCEVKLRNKMAECRRRVKEFVWYFWVKNKI 201
            +++A YVYG++L         ++G+  L    VK   K+ ECR++ K F+   W++N I
Sbjct: 124 EHMEASYVYGIILLCKGGESNEEQGMKLLN--AVKKSRKLGECRKKTKAFILSMWIRNPI 183

Query: 202 SVSSK------KNCNNKINCRVNERRNGWDWKD------EDDYYGEHTCEECKWKNEVSR 252
               +      K C  + N  +  +R  W W D      + D    + CE C W++EVS 
Sbjct: 184 VKCQELVNHHAKTCGRRNNGGIGGKRGWWQWIDDREDNEDKDVEEVNYCEGCMWEDEVSL 243

[Close]

BLAST of MELO3C011806 vs. NCBI nr
Match: gi|224122932|ref|XP_002318952.1| (F-box family protein [Populus trichocarpa])

HSP 1 Score: 141.7 bits (356), Expect = 1.7e-30
Identity = 87/243 (35.80%), Postives = 131/243 (53.91%), Query Frame = 1


Query: 20  LTKKMCKPLSSPLIVSLPNDLLIEVLAKVASSSYVDLVRAKLATKLFLHASNDRYIFRHV 79
           +TK   K          P DLL EVLA+VAS+S  DL  AKL+ K FL A+++ YIF H+
Sbjct: 1   MTKGRRKTSRHEFFKYFPKDLLTEVLARVASASISDLFTAKLSCKEFLEAASENYIFEHI 60

Query: 80  SLKNESFRNLLWNNTPKFWSFVETCNNNENPESLYRKGMLEFFTHCNEASGLACLKLSAQ 139
           ++  E    + W  +    SF+  C  N NPE+L+R+GM+EFF+     SG   LK +A+
Sbjct: 61  TI--EKLPVIPWRISHGASSFLARCKENGNPEALFRQGMVEFFSSNKPESGFQHLKNAAR 120

Query: 140 KGYVDACYVYGVVL--YAADLVDEGLAYL-KMCEVKLRNK-MAECRRRVKEFVWYFWVKN 199
           KG+V+A Y  GV+L  +      EG+  L  +   K R++ + ECR ++KE +   W+  
Sbjct: 121 KGHVEAIYTCGVILVCHGGQFKQEGIELLSSLKNYKSRHRTIKECRDKIKEILQSMWIDR 180

Query: 200 K---ISVSSKKNCNNKINCRVNERRNGWDWKDEDDYYGEHTCEECKWKNEVSRFCNMLRS 256
           +   I     K+     NC    +R    W DE++Y    TC+ C W +E + FC +LR+
Sbjct: 181 REAGIGPEEPKSHGRTCNCSKFNKRG---WIDEEEY---TTCDYCVWDHEATLFCKILRA 235

The following BLAST results are available for this feature:

BLAST of MELO3C011806 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FB79_ARATH	2.4e-16	28.44	Putative F-box protein At1g67623 OS=Arabidopsis thaliana GN=At1g67623 PE=3 SV=1	[more]

BLAST of MELO3C011806 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LS96_CUCSA	1.8e-98	70.27	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025065 PE=4 SV=1	[more]
B9I6Z5_POPTR	1.2e-30	35.80	F-box family protein OS=Populus trichocarpa GN=POPTR_0013s01020g PE=4 SV=1	[more]
A5AV49_VITVI	1.6e-30	36.21	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_039291 PE=4 SV=1	[more]
A0A0B2P0Z6_GLYSO	6.7e-29	36.24	Putative F-box protein OS=Glycine soja GN=glysoja_009836 PE=4 SV=1	[more]
I1KMZ2_SOYBN	6.7e-29	36.24	Uncharacterized protein OS=Glycine max GN=GLYMA_07G247800 PE=4 SV=2	[more]

BLAST of MELO3C011806 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G67623.1	1.4e-17	28.44	F-box family protein	[more]

BLAST of MELO3C011806 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449435498\|ref\|XP_004135532.1\|	1.8e-115	80.23	PREDICTED: putative F-box protein At1g67623 [Cucumis sativus]	[more]
gi\|449439561\|ref\|XP_004137554.1\|	2.6e-98	70.27	PREDICTED: putative F-box protein At1g67623 [Cucumis sativus]	[more]
gi\|659107472\|ref\|XP_008453691.1\|	1.7e-97	70.00	PREDICTED: putative F-box protein At1g67623 [Cucumis melo]	[more]
gi\|731376767\|ref\|XP_010656578.1\|	4.2e-32	34.96	PREDICTED: putative F-box protein At1g67623 [Vitis vinifera]	[more]
gi\|224122932\|ref\|XP_002318952.1\|	1.7e-30	35.80	F-box family protein [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001810	F-box_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003690	double-stranded DNA binding
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU44108	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C011806T1	MELO3C011806T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU44108	MU44108	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	unknown	SSF81383	F-box domain	coord: 23..86 score: 3.2
None	No IPR available	PANTHER	PTHR33784	FAMILY NOT NAMED	coord: 18..257 score: 1.1
None	No IPR available	PANTHER	PTHR33784:SF4	SUBFAMILY NOT NAMED	coord: 18..257 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C011806	Cla022913	Watermelon (97103) v1	mewmB077
MELO3C011806	ClCG11G013100	Watermelon (Charleston Gray)	mewcgB047
MELO3C011806	Cla97C11G219000	Watermelon (97103) v2	mewmbB051
MELO3C011806	Bhi07G000981	Wax gourd	mewgoB084
MELO3C011806	CSPI05G20820	Wild cucumber (PI 183967)	cpimeB369
MELO3C011806	Cucsa.076300	Cucumber (Gy14) v1	cgymeB077
MELO3C011806	CmaCh04G013070	Cucurbita maxima (Rimu)	cmameB652
MELO3C011806	CmoCh04G013730	Cucurbita moschata (Rifu)	cmomeB644
MELO3C011806	Lsi04G007390	Bottle gourd (USVL1VR-Ls)	lsimeB281
MELO3C011806	CsGy5G020330	Cucumber (Gy14) v2	cgybmeB319
MELO3C011806	Carg02012	Silver-seed gourd	carmeB0832
MELO3C011806	CsaV3_5G029620	Cucumber (Chinese Long) v3	cucmeB381

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C011806	Cucurbita pepo (Zucchini)	cpemeB025
MELO3C011806	Cucurbita pepo (Zucchini)	cpemeB376
MELO3C011806	Cucumber (Gy14) v2	cgybmeB318
MELO3C011806	Silver-seed gourd	carmeB0718
MELO3C011806	Cucurbita maxima (Rimu)	cmameB352
MELO3C011806	Cucurbita moschata (Rifu)	cmomeB346
MELO3C011806	Wild cucumber (PI 183967)	cpimeB368
MELO3C011806	Cucumber (Chinese Long) v2	cumeB377