Cucsa.076300 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.076300
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	F-box plant-like protein
Location	scaffold00789 : 700113 .. 700501 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGCAGACCCTTTTCTTCATCCCTCATTGTATCACTCCCCAACGATCTATTAATCGAAGTTCTTGCAAAAGTCGCAGCTTCTTCCTACATTGACTTAGTCCAAGCCAAATTAGCCACCAAACTTTTCCTCCATGCATCAAACGACGGATACATATTCCAACACGTGTCTCTTGAGAACAAAAGCTTTAGGAATCTTCTATGGAACAACACACCTCAATCTCGGTCCTTCATGGAAACTCTCAACAACAATGAGAATCCAGAGAGTTTGTATCGAAAAGGGACGATGGAATTTTTCAGTCACGGTAAAGAAGCTTCAGGATTGAGTTATTTAAAACAATCGGCTCAAAAAGGGTACGTGGATGCTTGTTATGTGTATGGTGTGGTTAT

mRNA sequence

ATGTGCAGACCCTTTTCTTCATCCCTCATTGTATCACTCCCCAACGATCTATTAATCGAAGTTCTTGCAAAAGTCGCAGCTTCTTCCTACATTGACTTAGTCCAAGCCAAATTAGCCACCAAACTTTTCCTCCATGCATCAAACGACGGATACATATTCCAACACGTGTCTCTTGAGAACAAAAGCTTTAGGAATCTTCTATGGAACAACACACCTCAATCTCGGTCCTTCATGGAAACTCTCAACAACAATGAGAATCCAGAGAGTTTGTATCGAAAAGGGACGATGGAATTTTTCAGTCACGGTAAAGAAGCTTCAGGATTGAGTTATTTAAAACAATCGGCTCAAAAAGGGTACGTGGATGCTTGTTATGTGTATGGTGTGGTTAT

Coding sequence (CDS)

ATGTGCAGACCCTTTTCTTCATCCCTCATTGTATCACTCCCCAACGATCTATTAATCGAAGTTCTTGCAAAAGTCGCAGCTTCTTCCTACATTGACTTAGTCCAAGCCAAATTAGCCACCAAACTTTTCCTCCATGCATCAAACGACGGATACATATTCCAACACGTGTCTCTTGAGAACAAAAGCTTTAGGAATCTTCTATGGAACAACACACCTCAATCTCGGTCCTTCATGGAAACTCTCAACAACAATGAGAATCCAGAGAGTTTGTATCGAAAAGGGACGATGGAATTTTTCAGTCACGGTAAAGAAGCTTCAGGATTGAGTTATTTAAAACAATCGGCTCAAAAAGGGTACGTGGATGCTTGTTATGTGTATGGTGTGGTTAT

Protein sequence

MCRPFSSSLIVSLPNDLLIEVLAKVAASSYIDLVQAKLATKLFLHASNDGYIFQHVSLENKSFRNLLWNNTPQSRSFMETLNNNENPESLYRKGTMEFFSHGKEASGLSYLKQSAQKGYVDACYVYGVVX

Homology

[Close]

BLAST of Cucsa.076300 vs. Swiss-Prot
Match: FB79_ARATH (Putative F-box protein At1g67623 OS=Arabidopsis thaliana GN=At1g67623 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 4.4e-14
Identity = 44/124 (35.48%), Postives = 71/124 (57.26%), Query Frame = 1


Query: 6   SSSLIVSLPNDLLIEVLAKVAASSYIDLVQAKLATKLFLHASNDGYIFQHVSLENKSFRN 65
           +S  + SLP DLL+E+ +   ASS   +   +L +K F    ++ Y+F  +SL+   F  
Sbjct: 20  ASLCLDSLPEDLLVEISSCTGASSLSAVRNLRLVSKSFRRICDEKYVFYRLSLKEIEF-- 79

Query: 66  LLWNNTPQSRSFMETLNNNENPESLYRKGTMEFFSHGKEASGLSYLKQSAQKGYVDACYV 125
           L W+    S  F+E    + NPE+L++KG + +F    +  GL YL ++A+KG  +A YV
Sbjct: 80  LPWHEN--SAKFIERCTESRNPEALFQKGFINYFRDKLQDRGLEYLAEAAEKGIKEAKYV 139

Query: 126 YGVV 130
           YGV+
Sbjct: 140 YGVI 139

[Close]

BLAST of Cucsa.076300 vs. TrEMBL
Match: A0A0A0LS96_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025065 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 6.7e-46
Identity = 96/124 (77.42%), Postives = 109/124 (87.90%), Query Frame = 1


Query: 6   SSSLIVSLPNDLLIEVLAKVAASSYIDLVQAKLATKLFLHASNDGYIFQHVSLENKSFRN 65
           S ++I SLPNDLL EVLAKVA SSYIDL+QAKLATK FL ASND YIFQHVSL N  FRN
Sbjct: 30  SPTVIKSLPNDLLTEVLAKVATSSYIDLIQAKLATKHFLEASNDRYIFQHVSLGN--FRN 89

Query: 66  LLWNNTPQSRSFMETLNNNENPESLYRKGTMEFFSHGKEASGLSYLKQSAQKGYVDACYV 125
           LLWNN+P+  SFMET NN+ENPESLYRKG +EFF+H KEASG++YLK+SAQKGYVDACYV
Sbjct: 90  LLWNNSPKFWSFMETCNNSENPESLYRKGMLEFFTHCKEASGMAYLKRSAQKGYVDACYV 149

Query: 126 YGVV 130
           +GV+
Sbjct: 150 FGVI 151

[Close]

BLAST of Cucsa.076300 vs. TrEMBL
Match: B9I6Z5_POPTR (F-box family protein OS=Populus trichocarpa GN=POPTR_0013s01020g PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.9e-19
Identity = 52/116 (44.83%), Postives = 77/116 (66.38%), Query Frame = 1


Query: 14  PNDLLIEVLAKVAASSYIDLVQAKLATKLFLHASNDGYIFQHVSLENKSFRNLLWNNTPQ 73
           P DLL EVLA+VA++S  DL  AKL+ K FL A+++ YIF+H+++E      + W  +  
Sbjct: 18  PKDLLTEVLARVASASISDLFTAKLSCKEFLEAASENYIFEHITIEKLPV--IPWRISHG 77

Query: 74  SRSFMETLNNNENPESLYRKGTMEFFSHGKEASGLSYLKQSAQKGYVDACYVYGVV 130
           + SF+     N NPE+L+R+G +EFFS  K  SG  +LK +A+KG+V+A Y  GV+
Sbjct: 78  ASSFLARCKENGNPEALFRQGMVEFFSSNKPESGFQHLKNAARKGHVEAIYTCGVI 131

[Close]

BLAST of Cucsa.076300 vs. TrEMBL
Match: U5GS00_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0001s32860g PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 9.2e-19
Identity = 48/118 (40.68%), Postives = 80/118 (67.80%), Query Frame = 1


Query: 12  SLPNDLLIEVLAKVAASSYIDLVQAKLATKLFLHASNDGYIFQHVSLENKSFRNLLWNNT 71
           S P DLL E LA+VA++S+ DL  AKL+ + FL A+++ YIF+H+++E   F  + W  +
Sbjct: 4   SFPGDLLTEALARVASTSFSDLFTAKLSCREFLEAASEKYIFEHITIEK--FPVIPWRIS 63

Query: 72  PQSRSFMETLNNNENPESLYRKGTMEFFSHGKEASGLSYLKQSAQKGYVDACYVYGVV 130
             +  F+++   N NPE+L+R+G  EFFS  K  SG  +L+++A+KG+V+A +  G++
Sbjct: 64  HSASCFLDSCKENGNPEALFRQGMFEFFSSKKPESGFQHLEKAAKKGHVEAIHTCGII 119

[Close]

BLAST of Cucsa.076300 vs. TrEMBL
Match: B9RMM6_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1081880 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.2e-18
Identity = 51/125 (40.80%), Postives = 81/125 (64.80%), Query Frame = 1


Query: 6   SSSLIVSLPNDLLIEVLAKVAASSYIDLVQAKLATKLFLHASNDGYIFQHVSLENKSFRN 65
           +S+ +  +P +LL E+LA+VA+ S+ D   AK   K FL A++D YIF+H S++   F  
Sbjct: 18  NSNRLSCMPRELLTEILARVASESFTDFFNAKTTCKEFLEAASDDYIFKHASID--CFPV 77

Query: 66  LLWNNTPQSRSFMETLNNNENPESLYRKGTMEFFSHGKEA-SGLSYLKQSAQKGYVDACY 125
           + W  T  + +F++    +ENPESL+R+G +++FS   E  SGL YLK++  KG+  A Y
Sbjct: 78  IPWKITDDASTFLDKCKKSENPESLFRQGMIDYFSTTLEKNSGLDYLKRATNKGHRVATY 137

Query: 126 VYGVV 130
           VYG++
Sbjct: 138 VYGII 140

[Close]

BLAST of Cucsa.076300 vs. TrEMBL
Match: A5AV49_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_039291 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.6e-18
Identity = 54/123 (43.90%), Postives = 80/123 (65.04%), Query Frame = 1


Query: 8   SLIVSLPNDLLIEVLAKVAASSYIDLVQAKLATKLFLHASNDGYIFQHVSLENKSFRNL- 67
           S I SL +DLLIEVL +VA+SS+ DL  AKL+ + FL AS D ++ +++S+E   F  + 
Sbjct: 13  STIESLSSDLLIEVLTRVASSSFTDLFNAKLSCRNFLEASKDTFVMKNISIEK--FPTIP 72

Query: 68  LWNNTPQSRSFMETLNNNENPESLYRKGTMEFFSHGKEASGLSYLKQSAQKGYVDACYVY 127
            W    +  SF++    + NPE LYR+G MEFFS  K  S   YLK++ + G+++A YVY
Sbjct: 73  WWQVKDEVSSFLKACKESGNPEVLYRQGMMEFFSWKKVESXEEYLKRAMEMGHMEASYVY 132

Query: 128 GVV 130
           G++
Sbjct: 133 GII 133

[Close]

BLAST of Cucsa.076300 vs. TAIR10
Match: AT1G67623.1 (AT1G67623.1 F-box family protein)

HSP 1 Score: 79.0 bits (193), Expect = 2.5e-15
Identity = 44/124 (35.48%), Postives = 71/124 (57.26%), Query Frame = 1


Query: 6   SSSLIVSLPNDLLIEVLAKVAASSYIDLVQAKLATKLFLHASNDGYIFQHVSLENKSFRN 65
           +S  + SLP DLL+E+ +   ASS   +   +L +K F    ++ Y+F  +SL+   F  
Sbjct: 20  ASLCLDSLPEDLLVEISSCTGASSLSAVRNLRLVSKSFRRICDEKYVFYRLSLKEIEF-- 79

Query: 66  LLWNNTPQSRSFMETLNNNENPESLYRKGTMEFFSHGKEASGLSYLKQSAQKGYVDACYV 125
           L W+    S  F+E    + NPE+L++KG + +F    +  GL YL ++A+KG  +A YV
Sbjct: 80  LPWHEN--SAKFIERCTESRNPEALFQKGFINYFRDKLQDRGLEYLAEAAEKGIKEAKYV 139

Query: 126 YGVV 130
           YGV+
Sbjct: 140 YGVI 139

[Close]

BLAST of Cucsa.076300 vs. NCBI nr
Match: gi|449435498|ref|XP_004135532.1| (PREDICTED: putative F-box protein At1g67623 [Cucumis sativus])

HSP 1 Score: 260.0 bits (663), Expect = 2.2e-66
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 1


Query: 1   MCRPFSSSLIVSLPNDLLIEVLAKVAASSYIDLVQAKLATKLFLHASNDGYIFQHVSLEN 60
           MCRPFSSSLIVSLPNDLLIEVLAKVAASSYIDLVQAKLATKLFLHASNDGYIFQHVSLEN
Sbjct: 24  MCRPFSSSLIVSLPNDLLIEVLAKVAASSYIDLVQAKLATKLFLHASNDGYIFQHVSLEN 83

Query: 61  KSFRNLLWNNTPQSRSFMETLNNNENPESLYRKGTMEFFSHGKEASGLSYLKQSAQKGYV 120
           KSFRNLLWNNTPQSRSFMETLNNNENPESLYRKGTMEFFSHGKEASGLSYLKQSAQKGYV
Sbjct: 84  KSFRNLLWNNTPQSRSFMETLNNNENPESLYRKGTMEFFSHGKEASGLSYLKQSAQKGYV 143

Query: 121 DACYVYGVV 130
           DACYVYGVV
Sbjct: 144 DACYVYGVV 152

[Close]

BLAST of Cucsa.076300 vs. NCBI nr
Match: gi|449439561|ref|XP_004137554.1| (PREDICTED: putative F-box protein At1g67623 [Cucumis sativus])

HSP 1 Score: 191.4 bits (485), Expect = 9.7e-46
Identity = 96/124 (77.42%), Postives = 109/124 (87.90%), Query Frame = 1


Query: 6   SSSLIVSLPNDLLIEVLAKVAASSYIDLVQAKLATKLFLHASNDGYIFQHVSLENKSFRN 65
           S ++I SLPNDLL EVLAKVA SSYIDL+QAKLATK FL ASND YIFQHVSL N  FRN
Sbjct: 30  SPTVIKSLPNDLLTEVLAKVATSSYIDLIQAKLATKHFLEASNDRYIFQHVSLGN--FRN 89

Query: 66  LLWNNTPQSRSFMETLNNNENPESLYRKGTMEFFSHGKEASGLSYLKQSAQKGYVDACYV 125
           LLWNN+P+  SFMET NN+ENPESLYRKG +EFF+H KEASG++YLK+SAQKGYVDACYV
Sbjct: 90  LLWNNSPKFWSFMETCNNSENPESLYRKGMLEFFTHCKEASGMAYLKRSAQKGYVDACYV 149

Query: 126 YGVV 130
           +GV+
Sbjct: 150 FGVI 151

[Close]

BLAST of Cucsa.076300 vs. NCBI nr
Match: gi|659107472|ref|XP_008453691.1| (PREDICTED: putative F-box protein At1g67623 [Cucumis melo])

HSP 1 Score: 182.6 bits (462), Expect = 4.5e-43
Identity = 94/124 (75.81%), Postives = 104/124 (83.87%), Query Frame = 1


Query: 6   SSSLIVSLPNDLLIEVLAKVAASSYIDLVQAKLATKLFLHASNDGYIFQHVSLENKSFRN 65
           S ++I SLPNDLL EVLAKVAASSY+DLVQAKLATK FL AS D YIFQHVSL N  F N
Sbjct: 29  SPTVIKSLPNDLLTEVLAKVAASSYVDLVQAKLATKQFLEASKDRYIFQHVSLGN--FEN 88

Query: 66  LLWNNTPQSRSFMETLNNNENPESLYRKGTMEFFSHGKEASGLSYLKQSAQKGYVDACYV 125
            LWNN+P+  SF+ET NNNENPESLYRKG +EFF+H KEASGL+YLK SAQKGYVDACYV
Sbjct: 89  HLWNNSPEFWSFIETCNNNENPESLYRKGMLEFFTHCKEASGLAYLKLSAQKGYVDACYV 148

Query: 126 YGVV 130
             V+
Sbjct: 149 CSVI 150

[Close]

BLAST of Cucsa.076300 vs. NCBI nr
Match: gi|224122932|ref|XP_002318952.1| (F-box family protein [Populus trichocarpa])

HSP 1 Score: 103.6 bits (257), Expect = 2.7e-19
Identity = 52/116 (44.83%), Postives = 77/116 (66.38%), Query Frame = 1


Query: 14  PNDLLIEVLAKVAASSYIDLVQAKLATKLFLHASNDGYIFQHVSLENKSFRNLLWNNTPQ 73
           P DLL EVLA+VA++S  DL  AKL+ K FL A+++ YIF+H+++E      + W  +  
Sbjct: 18  PKDLLTEVLARVASASISDLFTAKLSCKEFLEAASENYIFEHITIEKLPV--IPWRISHG 77

Query: 74  SRSFMETLNNNENPESLYRKGTMEFFSHGKEASGLSYLKQSAQKGYVDACYVYGVV 130
           + SF+     N NPE+L+R+G +EFFS  K  SG  +LK +A+KG+V+A Y  GV+
Sbjct: 78  ASSFLARCKENGNPEALFRQGMVEFFSSNKPESGFQHLKNAARKGHVEAIYTCGVI 131

[Close]

BLAST of Cucsa.076300 vs. NCBI nr
Match: gi|743830432|ref|XP_011023775.1| (PREDICTED: putative F-box protein At1g67623 [Populus euphratica])

HSP 1 Score: 102.8 bits (255), Expect = 4.5e-19
Identity = 52/116 (44.83%), Postives = 76/116 (65.52%), Query Frame = 1


Query: 14  PNDLLIEVLAKVAASSYIDLVQAKLATKLFLHASNDGYIFQHVSLENKSFRNLLWNNTPQ 73
           P DLL EVLA+VA++S  DL  AKL+ K FL A+++ YIF+H+++E      + W  +  
Sbjct: 18  PKDLLTEVLARVASASISDLFTAKLSCKEFLEAASENYIFEHITIEKLPV--IPWTISHG 77

Query: 74  SRSFMETLNNNENPESLYRKGTMEFFSHGKEASGLSYLKQSAQKGYVDACYVYGVV 130
           + SF+     N NPE+L+R G +EFFS  K  SG  +LK +A+KG+V+A Y  GV+
Sbjct: 78  ASSFLARCKENGNPEALFRHGMVEFFSSNKPESGFQHLKNAARKGHVEAIYTCGVI 131

The following BLAST results are available for this feature:

BLAST of Cucsa.076300 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FB79_ARATH	4.4e-14	35.48	Putative F-box protein At1g67623 OS=Arabidopsis thaliana GN=At1g67623 PE=3 SV=1	[more]

BLAST of Cucsa.076300 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LS96_CUCSA	6.7e-46	77.42	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025065 PE=4 SV=1	[more]
B9I6Z5_POPTR	1.9e-19	44.83	F-box family protein OS=Populus trichocarpa GN=POPTR_0013s01020g PE=4 SV=1	[more]
U5GS00_POPTR	9.2e-19	40.68	Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0001s32860g P...	[more]
B9RMM6_RICCO	1.2e-18	40.80	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1081880 PE=4 SV=1	[more]
A5AV49_VITVI	1.6e-18	43.90	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_039291 PE=4 SV=1	[more]

BLAST of Cucsa.076300 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G67623.1	2.5e-15	35.48	F-box family protein	[more]

BLAST of Cucsa.076300 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449435498\|ref\|XP_004135532.1\|	2.2e-66	100.00	PREDICTED: putative F-box protein At1g67623 [Cucumis sativus]	[more]
gi\|449439561\|ref\|XP_004137554.1\|	9.7e-46	77.42	PREDICTED: putative F-box protein At1g67623 [Cucumis sativus]	[more]
gi\|659107472\|ref\|XP_008453691.1\|	4.5e-43	75.81	PREDICTED: putative F-box protein At1g67623 [Cucumis melo]	[more]
gi\|224122932\|ref\|XP_002318952.1\|	2.7e-19	44.83	F-box family protein [Populus trichocarpa]	[more]
gi\|743830432\|ref\|XP_011023775.1\|	4.5e-19	44.83	PREDICTED: putative F-box protein At1g67623 [Populus euphratica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.076300.1	Cucsa.076300.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain	GENE3D	G3DSA:1.25.40.10		coord: 70..128 score: 3.
None	No IPR available	PANTHER	PTHR33784	FAMILY NOT NAMED	coord: 6..129 score: 1.4
None	No IPR available	PANTHER	PTHR33784:SF4	SUBFAMILY NOT NAMED	coord: 6..129 score: 1.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.076300	Cla022913	Watermelon (97103) v1	cgywmB080
Cucsa.076300	MELO3C011806	Melon (DHL92) v3.5.1	cgymeB077
Cucsa.076300	ClCG11G013100	Watermelon (Charleston Gray)	cgywcgB076
Cucsa.076300	CSPI05G20820	Wild cucumber (PI 183967)	cgycpiB076
Cucsa.076300	CmaCh04G013070	Cucurbita maxima (Rimu)	cgycmaB0127
Cucsa.076300	CmoCh04G013730	Cucurbita moschata (Rifu)	cgycmoB0124
Cucsa.076300	Lsi04G007390	Bottle gourd (USVL1VR-Ls)	cgylsiB076
Cucsa.076300	MELO3C034049.2	Melon (DHL92) v3.6.1	cgymedB076
Cucsa.076300	CsaV3_5G029620	Cucumber (Chinese Long) v3	cgycucB076
Cucsa.076300	Cla97C11G219000	Watermelon (97103) v2	cgywmbB072
Cucsa.076300	Bhi07G000981	Wax gourd	cgywgoB088
Cucsa.076300	Carg02012	Silver-seed gourd	carcgyB0962

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.076300	Cucurbita maxima (Rimu)	cgycmaB0124
Cucsa.076300	Cucurbita moschata (Rifu)	cgycmoB0121
Cucsa.076300	Cucumber (Chinese Long) v2	cgycuB073
Cucsa.076300	Cucurbita pepo (Zucchini)	cgycpeB0121
Cucsa.076300	Cucurbita pepo (Zucchini)	cgycpeB0124
Cucsa.076300	Silver-seed gourd	carcgyB0812
Cucsa.076300	Cucumber (Chinese Long) v3	cgycucB077