ClCG11G013100 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG11G013100
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	F-box family protein
Location	CG_Chr11 : 26420576 .. 26421900 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCCCTCAGCTGAAAACAAAATCACAGGCTTTGGACTCTCAAATTTCAAGGTACGTTTTACTTTTAAAATGTATTTTATTAAATACAGAGATTTTAGTTATTATTATTAACACTTATTTCAATTTGTGCAGTTTTAATTCTTAAAATTACCTTATTTTTTCAATTTATTTTAGTAAATAGAAGAAAAATTATCTTAAATGACAAAATTGTTGAAAATATTTATAAATATAGTAAAATTTCAGTCTATTTTGTGTCAATGTAATAGACTGGGATAAACAAACTGTAATTTATTGCGGTCTATTACCAACATTTTGCTATATTTGTAAATATTTGAAAGTTGTTTTTTCCTTTTTCAATATAAAAAAAAATTGTTTTTAACGCTAATGTAAAAATTTATATGAAAAAAAGAAAATGCTAGAGGTTACTAAATTGTATTTGTCTCCTACGCCGGTGAGGACTCTTTTACACCGTCAGGTTCGGCCGCCGGATTCCACCAACTCCGCGGCGGCTCGGTGGTGATGAATTAATTCTAATATAAAGCTAATTGAATATCTGTCTAAGAATAAAGTGATTATATTATTCTTTATTAATTCTTCTCTAAATTAATTATATGCAGAAGAACAAAAAGTATGCGCATGCCCGTCATTAAATCACTCCCAAATGATTTATTGATTGAAGTTCTTGCAAAAGTAGCAGCTTCTTCTTACATTGACTTAATCCAAGCCAAATTAGCCACCAAAGATTTTCTAGAAGCATCAAACGACGGATACGTATTCCGACATGTGTCTCTCAGAAACTTTCGGAAGCTTCTATGGAACAACAGTCCTGAATTTTGGTCATTCATGGAAAATTGCAACAACAATGAAAATCCAGAGAGTCTATATCGAAAGGGAATGTTGGAATTCTTCACCCATTGTAGAGAAGCTTCTGGGTTGGGTTATCTAAAACTATCTGCTCAAAAAGGCTACGTGGATGCTTGCTATGTATACGGTATCATTATGTACGCATCCAATGTAAAAGATGACGGACTCAAATATTTGAAAAATTGTGAGATGAAATTAGAGTATAAAATGAGTGAATGTCGTGGGAGAGTGAAGGAATTTGTTTGGTGTCTTTGGGTTAATAATAAGATTTGTTTTTCGGAAAATGGCGAGAGATATTGTAGTAATGTGAAAAATAATTGTATGATTAATGAGAAAAGAAAGGGATGGGATTGGAATGATGAAGATGATTATTATGGAGAACATGCATGTGAAGAGTGTAAATGGAATGGTGAGGTTTTCAGATTTTGTAATATGTTGAGAACAGGAGGCTACAGCTAA

mRNA sequence

ATGGCCCCTCAGCTGAAAACAAAATCACAGGCTTTGGACTCTCAAATTTCAAGAAGAACAAAAAGTATGCGCATGCCCGTCATTAAATCACTCCCAAATGATTTATTGATTGAAGTTCTTGCAAAAGTAGCAGCTTCTTCTTACATTGACTTAATCCAAGCCAAATTAGCCACCAAAGATTTTCTAGAAGCATCAAACGACGGATACGTATTCCGACATGTGTCTCTCAGAAACTTTCGGAAGCTTCTATGGAACAACAGTCCTGAATTTTGGTCATTCATGGAAAATTGCAACAACAATGAAAATCCAGAGAGTCTATATCGAAAGGGAATGTTGGAATTCTTCACCCATTGTAGAGAAGCTTCTGGGTTGGGTTATCTAAAACTATCTGCTCAAAAAGGCTACGTGGATGCTTGCTATGTATACGGTATCATTATGTACGCATCCAATGTAAAAGATGACGGACTCAAATATTTGAAAAATTGTGAGATGAAATTAGAGTATAAAATGAGTGAATGTCGTGGGAGAGTGAAGGAATTTGTTTGGTGTCTTTGGGTTAATAATAAGATTTGTTTTTCGGAAAATGGCGAGAGATATTGTAGTAATGTGAAAAATAATTGTATGATTAATGAGAAAAGAAAGGGATGGGATTGGAATGATGAAGATGATTATTATGGAGAACATGCATGTGAAGAGTGTAAATGGAATGGTGAGGTTTTCAGATTTTGTAATATGTTGAGAACAGGAGGCTACAGCTAA

Coding sequence (CDS)

ATGGCCCCTCAGCTGAAAACAAAATCACAGGCTTTGGACTCTCAAATTTCAAGAAGAACAAAAAGTATGCGCATGCCCGTCATTAAATCACTCCCAAATGATTTATTGATTGAAGTTCTTGCAAAAGTAGCAGCTTCTTCTTACATTGACTTAATCCAAGCCAAATTAGCCACCAAAGATTTTCTAGAAGCATCAAACGACGGATACGTATTCCGACATGTGTCTCTCAGAAACTTTCGGAAGCTTCTATGGAACAACAGTCCTGAATTTTGGTCATTCATGGAAAATTGCAACAACAATGAAAATCCAGAGAGTCTATATCGAAAGGGAATGTTGGAATTCTTCACCCATTGTAGAGAAGCTTCTGGGTTGGGTTATCTAAAACTATCTGCTCAAAAAGGCTACGTGGATGCTTGCTATGTATACGGTATCATTATGTACGCATCCAATGTAAAAGATGACGGACTCAAATATTTGAAAAATTGTGAGATGAAATTAGAGTATAAAATGAGTGAATGTCGTGGGAGAGTGAAGGAATTTGTTTGGTGTCTTTGGGTTAATAATAAGATTTGTTTTTCGGAAAATGGCGAGAGATATTGTAGTAATGTGAAAAATAATTGTATGATTAATGAGAAAAGAAAGGGATGGGATTGGAATGATGAAGATGATTATTATGGAGAACATGCATGTGAAGAGTGTAAATGGAATGGTGAGGTTTTCAGATTTTGTAATATGTTGAGAACAGGAGGCTACAGCTAA

Protein sequence

MAPQLKTKSQALDSQISRRTKSMRMPVIKSLPNDLLIEVLAKVAASSYIDLIQAKLATKDFLEASNDGYVFRHVSLRNFRKLLWNNSPEFWSFMENCNNNENPESLYRKGMLEFFTHCREASGLGYLKLSAQKGYVDACYVYGIIMYASNVKDDGLKYLKNCEMKLEYKMSECRGRVKEFVWCLWVNNKICFSENGERYCSNVKNNCMINEKRKGWDWNDEDDYYGEHACEECKWNGEVFRFCNMLRTGGYS

Homology

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BLAST of ClCG11G013100 vs. Swiss-Prot
Match: FB79_ARATH (Putative F-box protein At1g67623 OS=Arabidopsis thaliana GN=At1g67623 PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.5e-18
Identity = 63/226 (27.88%), Postives = 108/226 (47.79%), Query Frame = 1


Query: 18  RRTKSMRMPVIKSLPNDLLIEVLAKVAASSYIDLIQAKLATKDFLEASNDGYVFRHVSLR 77
           R++K+     + SLP DLL+E+ +   ASS   +   +L +K F    ++ YVF  +SL+
Sbjct: 14  RKSKTKASLCLDSLPEDLLVEISSCTGASSLSAVRNLRLVSKSFRRICDEKYVFYRLSLK 73

Query: 78  NFRKLLWNNSPEFWSFMENCNNNENPESLYRKGMLEFFTHCREASGLGYLKLSAQKGYVD 137
               L W+ +     F+E C  + NPE+L++KG + +F    +  GL YL  +A+KG  +
Sbjct: 74  EIEFLPWHENSA--KFIERCTESRNPEALFQKGFINYFRDKLQDRGLEYLAEAAEKGIKE 133

Query: 138 ACYVYGIIM--YASNVKDDGLKYLKNCEMKL----EYKMSECRGRVKEFVWCLWVNNKIC 197
           A YVYG+I+       K  G + L +   +L      ++ E R ++++  +  W ++   
Sbjct: 134 AKYVYGVILICLGGKTKQKGFEILSSVIKQLMSTTMNELVEFRYKIQKIRYGFWWSDNTV 193

Query: 198 FSENGERYCS-----NVKNNCMINEKRKGWD-WNDEDDYYGEHACE 232
             +    Y S     + K   ++    +GW  + DE D     ACE
Sbjct: 194 VEQLKTAYVSEKCKCDCKTRMLLLVMNRGWYLFGDETDLDFSSACE 237

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BLAST of ClCG11G013100 vs. Swiss-Prot
Match: FB127_ARATH (F-box protein At2g35280 OS=Arabidopsis thaliana GN=At2g35280 PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 5.9e-07
Identity = 37/138 (26.81%), Postives = 67/138 (48.55%), Query Frame = 1


Query: 28  IKSLPNDLLIEVLAKVAASSYIDLIQAKLATKDFLEASNDGYVFRHVSLRNFRKLLWNNS 87
           +++LP DLL E++AK+   S  D     L+ K+   ++ND  V + ++L    K   +  
Sbjct: 11  LEALPQDLLREIVAKIGVKSAEDYHNCILSCKELGASANDERVLKTLNLALLVKKPLSCR 70

Query: 88  PEFWSFMENCNNNENPESLYRKGMLEFFT--HCREASGLGYLKLSAQKGYVDACYVYGII 147
                 M+ C  N NP++ Y KG++ +F   HC     L ++ ++A  G  +A Y+Y ++
Sbjct: 71  KHLL-IMKKCLANNNPDAHYIKGIIWYFNLDHC--DVDLHHIGIAANGGQKEAIYMYAML 130

Query: 148 MYASNVKDDGLKYLKNCE 164
           +      ++G  Y+   E
Sbjct: 131 LLCRGRTEEGKTYMSQLE 145

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BLAST of ClCG11G013100 vs. TrEMBL
Match: A0A0A0LS96_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025065 PE=4 SV=1)

HSP 1 Score: 358.6 bits (919), Expect = 6.2e-96
Identity = 179/256 (69.92%), Postives = 203/256 (79.30%), Query Frame = 1


Query: 4   QLKTKSQALDSQISRRTKSMRMPV-----IKSLPNDLLIEVLAKVAASSYIDLIQAKLAT 63
           Q K  S ALD+QISR T+  ++ V     IKSLPNDLL EVLAKVA SSYIDLIQAKLAT
Sbjct: 5   QPKRDSVALDTQISRITEKNQIDVLSPTVIKSLPNDLLTEVLAKVATSSYIDLIQAKLAT 64

Query: 64  KDFLEASNDGYVFRHVSLRNFRKLLWNNSPEFWSFMENCNNNENPESLYRKGMLEFFTHC 123
           K FLEASND Y+F+HVSL NFR LLWNNSP+FWSFME CNN+ENPESLYRKGMLEFFTHC
Sbjct: 65  KHFLEASNDRYIFQHVSLGNFRNLLWNNSPKFWSFMETCNNSENPESLYRKGMLEFFTHC 124

Query: 124 REASGLGYLKLSAQKGYVDACYVYGIIMYASNVKDDGLKYLKNCEMKLEYKMSECRGRVK 183
           +EASG+ YLK SAQKGYVDACYV+G+I+YASN+KD+GL++LKN E+KL  KM ECR RVK
Sbjct: 125 KEASGMAYLKRSAQKGYVDACYVFGVILYASNLKDEGLEFLKNNEVKLGNKMIECRQRVK 184

Query: 184 EFVWCLWVNNKICFSENGERYCSNV-KN-NCMINEKRKGWDWNDEDDYYGEHACEECKWN 243
           EFV  +W+ NKI  SE    Y     KN NC +NEK   WD  DEDDYYG++ CEECKWN
Sbjct: 185 EFVSYIWIKNKISLSEGDSSYGRKCDKNINCRVNEKINVWDSKDEDDYYGKYTCEECKWN 244

Query: 244 GEVFRFCNMLRTGGYS 253
            EV RFC MLRTG +S
Sbjct: 245 NEVLRFCKMLRTGRFS 260

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BLAST of ClCG11G013100 vs. TrEMBL
Match: A5AV49_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_039291 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 6.1e-35
Identity = 92/230 (40.00%), Postives = 135/230 (58.70%), Query Frame = 1


Query: 28  IKSLPNDLLIEVLAKVAASSYIDLIQAKLATKDFLEASNDGYVFRHVSLRNFRKL-LWNN 87
           I+SL +DLLIEVL +VA+SS+ DL  AKL+ ++FLEAS D +V +++S+  F  +  W  
Sbjct: 15  IESLSSDLLIEVLTRVASSSFTDLFNAKLSCRNFLEASKDTFVMKNISIEKFPTIPWWQV 74

Query: 88  SPEFWSFMENCNNNENPESLYRKGMLEFFTHCREASGLGYLKLSAQKGYVDACYVYGIIM 147
             E  SF++ C  + NPE LYR+GM+EFF+  +  S   YLK + + G+++A YVYGII+
Sbjct: 75  KDEVSSFLKACKESGNPEVLYRQGMMEFFSWKKVESXEEYLKRAMEMGHMEASYVYGIIL 134

Query: 148 Y---ASNVKDDGLKYLKNCEMKLEYKMSECRGRVKEFVWCLWVNNKICFSENGERYCSNV 207
                 + ++ G+K L    +K   K+ ECR R + F   +W+ N I   +    Y +N 
Sbjct: 135 LCKGGDSNEEQGMKLLN--AVKKSRKLGECRKRTRAFTLSMWIRNPIVKCQELTSYHANT 194

Query: 208 ---KNNCMINEKRKGWDW--NDED-DYYGEHACEECKWNGEVFRFCNMLR 248
              +NN  I  KR GW W  +DED D    + CE C W+ EV  FC + R
Sbjct: 195 CGRRNNGGIGGKR-GWPWIEDDEDKDVEEVNYCEACIWDDEVSLFCKLFR 241

[Close]

BLAST of ClCG11G013100 vs. TrEMBL
Match: B9I6Z5_POPTR (F-box family protein OS=Populus trichocarpa GN=POPTR_0013s01020g PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 6.7e-34
Identity = 84/237 (35.44%), Postives = 134/237 (56.54%), Query Frame = 1


Query: 19  RTKSMRMPVIKSLPNDLLIEVLAKVAASSYIDLIQAKLATKDFLEASNDGYVFRHVSLRN 78
           R K+ R    K  P DLL EVLA+VA++S  DL  AKL+ K+FLEA+++ Y+F H+++  
Sbjct: 5   RRKTSRHEFFKYFPKDLLTEVLARVASASISDLFTAKLSCKEFLEAASENYIFEHITIEK 64

Query: 79  FRKLLWNNSPEFWSFMENCNNNENPESLYRKGMLEFFTHCREASGLGYLKLSAQKGYVDA 138
              + W  S    SF+  C  N NPE+L+R+GM+EFF+  +  SG  +LK +A+KG+V+A
Sbjct: 65  LPVIPWRISHGASSFLARCKENGNPEALFRQGMVEFFSSNKPESGFQHLKNAARKGHVEA 124

Query: 139 CYVYGIIM--YASNVKDDGLKYLKNCE-MKLEYK-MSECRGRVKEFVWCLWVNNKICFSE 198
            Y  G+I+  +    K +G++ L + +  K  ++ + ECR ++KE +  +W++ +     
Sbjct: 125 IYTCGVILVCHGGQFKQEGIELLSSLKNYKSRHRTIKECRDKIKEILQSMWIDRREAGIG 184

Query: 199 NGERYCSNVKNNCMINEKRKGWDWNDEDDYYGEHACEECKWNGEVFRFCNMLRTGGY 252
             E        NC    KR    W DE++Y     C+ C W+ E   FC +LR  G+
Sbjct: 185 PEEPKSHGRTCNCSKFNKR---GWIDEEEY---TTCDYCVWDHEATLFCKILRARGF 235

[Close]

BLAST of ClCG11G013100 vs. TrEMBL
Match: A0A0B2QF57_GLYSO (Putative F-box protein OS=Glycine soja GN=glysoja_006820 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 5.0e-29
Identity = 84/216 (38.89%), Postives = 129/216 (59.72%), Query Frame = 1


Query: 28  IKSLPNDLLIEVLAKVAASSYIDLIQAKLATKDFLEASNDGYVFRHVSLRNFRKLLWNNS 87
           IKSLP DLL+EV+A+VA+ S +DL   K   KDFL+AS D YV++ VSL  F  + W  +
Sbjct: 26  IKSLPKDLLVEVVARVASDSIVDLRNMKQCCKDFLDASEDNYVWQQVSLDKFPLMRWLPN 85

Query: 88  PEFWSFMENCNNNENPESLYRKGMLEFFTHCR-EASGLGYLKLSAQKGYVDACYVYGIIM 147
            +   F++ C  + N ESLYR+G+L+FF +     +GLG LK +A KG+++A YVYG+I+
Sbjct: 86  DKASCFLKCCRESGNIESLYREGLLKFFNYPNGNINGLGDLKTAALKGHIEAKYVYGMIL 145

Query: 148 YASNVKDDGLKYLKNCEMKLEYK-MSECRGRVKEFVWCLWVNNKICFSENGERYCSNVKN 207
             S+  +   + L++     ++K + +CR +VK+ V  LW  N +    N    C + K 
Sbjct: 146 LCSHDDESRKQGLEHMRFLRKFKCIIKCRNKVKQLVDDLWKGNGM-LVRNQTPLCRS-KK 205

Query: 208 NCMINEKRKG-WDW-NDEDDYYGEHACEECKWNGEV 240
            C     +KG W + +DEDD    + CE C+W+ E+
Sbjct: 206 TCKGWRVKKGVWSFLDDEDD--DINLCEYCRWDYEI 237

[Close]

BLAST of ClCG11G013100 vs. TrEMBL
Match: I1KMZ2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_07G247800 PE=4 SV=2)

HSP 1 Score: 133.3 bits (334), Expect = 4.2e-28
Identity = 82/234 (35.04%), Postives = 124/234 (52.99%), Query Frame = 1


Query: 17  SRRTKSMRMPVIKSLPNDLLIEVLAKVAASSYIDLIQAKLATKDFLEASNDGYVFRHVSL 76
           +++  S+ +  IKSLP +L +E+ AKVA  S  D    KL  K+FL A+ D YV+RH S+
Sbjct: 11  NKKHGSVSVTTIKSLPKELQVEIFAKVATRSIFDHCMIKLCCKEFLHAAEDDYVYRHASM 70

Query: 77  RNFR--KLLWNNSPEFWSFMENCNNNENPESLYRKGMLEFFTHCREASGLGYLKLSAQKG 136
            NF    L W    +  SF++ C  + N E LYR+GML++FT  R   GL  LK +A +G
Sbjct: 71  ENFALVPLPWFTGNKESSFLKRCRESGNSEILYREGMLQYFTSSRVELGLKNLKEAALEG 130

Query: 137 YVDACYVYGIIMYASNVKDDGLK---YLKNCEMKLEYKMSECRGRVKEFVWCLWVNNKIC 196
           + DA YVY +++     +D+G +   +   C +K    +  CR RVK FV  +W+ NK  
Sbjct: 131 HDDAKYVYCMLLMCG--EDEGQRKQGFDLFCSLKESTSVIRCRKRVKSFVRSMWLKNK-- 190

Query: 197 FSENGERYCSNVKNNCMINEKRKGWDWNDEDDYYGEHACEECKWNGEVFRFCNM 246
              NG+             +K+    W+  +D  G  +C+ C  + E+  FCNM
Sbjct: 191 --PNGKSSFCGSGTCDSERQKQLSKRWSSFEDKDGGISCQRCGADHELGFFCNM 238

[Close]

BLAST of ClCG11G013100 vs. TAIR10
Match: AT1G67623.1 (AT1G67623.1 F-box family protein)

HSP 1 Score: 94.7 bits (234), Expect = 8.4e-20
Identity = 63/226 (27.88%), Postives = 108/226 (47.79%), Query Frame = 1


Query: 18  RRTKSMRMPVIKSLPNDLLIEVLAKVAASSYIDLIQAKLATKDFLEASNDGYVFRHVSLR 77
           R++K+     + SLP DLL+E+ +   ASS   +   +L +K F    ++ YVF  +SL+
Sbjct: 14  RKSKTKASLCLDSLPEDLLVEISSCTGASSLSAVRNLRLVSKSFRRICDEKYVFYRLSLK 73

Query: 78  NFRKLLWNNSPEFWSFMENCNNNENPESLYRKGMLEFFTHCREASGLGYLKLSAQKGYVD 137
               L W+ +     F+E C  + NPE+L++KG + +F    +  GL YL  +A+KG  +
Sbjct: 74  EIEFLPWHENSA--KFIERCTESRNPEALFQKGFINYFRDKLQDRGLEYLAEAAEKGIKE 133

Query: 138 ACYVYGIIM--YASNVKDDGLKYLKNCEMKL----EYKMSECRGRVKEFVWCLWVNNKIC 197
           A YVYG+I+       K  G + L +   +L      ++ E R ++++  +  W ++   
Sbjct: 134 AKYVYGVILICLGGKTKQKGFEILSSVIKQLMSTTMNELVEFRYKIQKIRYGFWWSDNTV 193

Query: 198 FSENGERYCS-----NVKNNCMINEKRKGWD-WNDEDDYYGEHACE 232
             +    Y S     + K   ++    +GW  + DE D     ACE
Sbjct: 194 VEQLKTAYVSEKCKCDCKTRMLLLVMNRGWYLFGDETDLDFSSACE 237

[Close]

BLAST of ClCG11G013100 vs. TAIR10
Match: AT1G74875.1 (AT1G74875.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 81.6 bits (200), Expect = 7.4e-16
Identity = 61/228 (26.75%), Postives = 103/228 (45.18%), Query Frame = 1


Query: 33  NDLLIEVLAKVAASSYIDLIQAKLATKDFLEASNDGYVFRHVSLRNFRKLLWNNSPEFWS 92
           N   I ++  V +SS  +    +L +K F   SND Y+ + +SL     L W N  +F +
Sbjct: 17  NMFQIHLVINVLSSSLSEFRNLQLVSKSFKRISNDRYILQRLSLNKIPLLPWRNRKKFHN 76

Query: 93  FMENCNNNENPESLYRKGMLEFF---THCREAS-GLGYLKLSAQKGYVDACYVYGIIM-- 152
           F + C  + N E++YRKG++++F   +H R+   GL ++  +A  G  +A YVYG+I+  
Sbjct: 77  FFKRCRKSGNLEAIYRKGLVDYFHRDSHERQRDRGLKHIAKTANNGNQEAQYVYGLILIC 136

Query: 153 YASNVKDDGLKYLKNCEMKLEY-----KMSECRGRVKEFVWCLWVNNKICFSENGERYCS 212
                K +G K L +    L       +M + R  ++   W  W    +   +      S
Sbjct: 137 LGGKTKQNGFKILSSLRKPLMLSNTIKEMEKHRTHIRNMWW--WGEPMMRHLQK-----S 196

Query: 213 NVKNNCMINEKRKGWD-------WNDEDDYYGEHACEECKWNGEVFRF 243
            V+ NC  + + + +        + ++DD     ACE C  + EV  F
Sbjct: 197 YVRENCNCDGRTEIFPNYCFRHRFGEDDDMLTSSACEICLCHHEVKLF 237

[Close]

BLAST of ClCG11G013100 vs. TAIR10
Match: AT2G35280.1 (AT2G35280.1 F-box family protein)

HSP 1 Score: 56.2 bits (134), Expect = 3.3e-08
Identity = 37/138 (26.81%), Postives = 67/138 (48.55%), Query Frame = 1


Query: 28  IKSLPNDLLIEVLAKVAASSYIDLIQAKLATKDFLEASNDGYVFRHVSLRNFRKLLWNNS 87
           +++LP DLL E++AK+   S  D     L+ K+   ++ND  V + ++L    K   +  
Sbjct: 11  LEALPQDLLREIVAKIGVKSAEDYHNCILSCKELGASANDERVLKTLNLALLVKKPLSCR 70

Query: 88  PEFWSFMENCNNNENPESLYRKGMLEFFT--HCREASGLGYLKLSAQKGYVDACYVYGII 147
                 M+ C  N NP++ Y KG++ +F   HC     L ++ ++A  G  +A Y+Y ++
Sbjct: 71  KHLL-IMKKCLANNNPDAHYIKGIIWYFNLDHC--DVDLHHIGIAANGGQKEAIYMYAML 130

Query: 148 MYASNVKDDGLKYLKNCE 164
           +      ++G  Y+   E
Sbjct: 131 LLCRGRTEEGKTYMSQLE 145

[Close]

BLAST of ClCG11G013100 vs. NCBI nr
Match: gi|449435498|ref|XP_004135532.1| (PREDICTED: putative F-box protein At1g67623 [Cucumis sativus])

HSP 1 Score: 362.1 bits (928), Expect = 8.0e-97
Identity = 179/259 (69.11%), Postives = 207/259 (79.92%), Query Frame = 1


Query: 1   MAPQLKTKSQ-ALDSQISRRTKSMRMP----VIKSLPNDLLIEVLAKVAASSYIDLIQAK 60
           MA QLK KS+ + +SQIS RTK M  P    +I SLPNDLLIEVLAKVAASSYIDL+QAK
Sbjct: 1   MANQLKRKSEPSFNSQISTRTKKMCRPFSSSLIVSLPNDLLIEVLAKVAASSYIDLVQAK 60

Query: 61  LATKDFLEASNDGYVFRHVSLRN--FRKLLWNNSPEFWSFMENCNNNENPESLYRKGMLE 120
           LATK FL ASNDGY+F+HVSL N  FR LLWNN+P+  SFME  NNNENPESLYRKG +E
Sbjct: 61  LATKLFLHASNDGYIFQHVSLENKSFRNLLWNNTPQSRSFMETLNNNENPESLYRKGTME 120

Query: 121 FFTHCREASGLGYLKLSAQKGYVDACYVYGIIMYASNVKDDGLKYLKNCEMKLEYKMSEC 180
           FF+H +EASGL YLK SAQKGYVDACYVYG++MYA+N+K++G++YLK CE KL  KM+EC
Sbjct: 121 FFSHGKEASGLSYLKQSAQKGYVDACYVYGVVMYAANLKEEGVEYLKMCEAKLGNKMAEC 180

Query: 181 RGRVKEFVWCLWVNNKICFSENGERYCSNVKNNCMINEKRKGWDWNDEDDYYGEHACEEC 240
           R RVKEFVW  W+ N+I  S   +  CSNV  NC +NE+  GWDW DEDDYYGEH CE+C
Sbjct: 181 RRRVKEFVWYFWIKNRISMS---KEICSNV--NCKVNERSNGWDWKDEDDYYGEHTCEQC 240

Query: 241 KWNGEVFRFCNMLRTGGYS 253
           KW+ EV RFCNMLR GGYS
Sbjct: 241 KWSNEVLRFCNMLRRGGYS 254

[Close]

BLAST of ClCG11G013100 vs. NCBI nr
Match: gi|449439561|ref|XP_004137554.1| (PREDICTED: putative F-box protein At1g67623 [Cucumis sativus])

HSP 1 Score: 358.6 bits (919), Expect = 8.9e-96
Identity = 179/256 (69.92%), Postives = 203/256 (79.30%), Query Frame = 1


Query: 4   QLKTKSQALDSQISRRTKSMRMPV-----IKSLPNDLLIEVLAKVAASSYIDLIQAKLAT 63
           Q K  S ALD+QISR T+  ++ V     IKSLPNDLL EVLAKVA SSYIDLIQAKLAT
Sbjct: 5   QPKRDSVALDTQISRITEKNQIDVLSPTVIKSLPNDLLTEVLAKVATSSYIDLIQAKLAT 64

Query: 64  KDFLEASNDGYVFRHVSLRNFRKLLWNNSPEFWSFMENCNNNENPESLYRKGMLEFFTHC 123
           K FLEASND Y+F+HVSL NFR LLWNNSP+FWSFME CNN+ENPESLYRKGMLEFFTHC
Sbjct: 65  KHFLEASNDRYIFQHVSLGNFRNLLWNNSPKFWSFMETCNNSENPESLYRKGMLEFFTHC 124

Query: 124 REASGLGYLKLSAQKGYVDACYVYGIIMYASNVKDDGLKYLKNCEMKLEYKMSECRGRVK 183
           +EASG+ YLK SAQKGYVDACYV+G+I+YASN+KD+GL++LKN E+KL  KM ECR RVK
Sbjct: 125 KEASGMAYLKRSAQKGYVDACYVFGVILYASNLKDEGLEFLKNNEVKLGNKMIECRQRVK 184

Query: 184 EFVWCLWVNNKICFSENGERYCSNV-KN-NCMINEKRKGWDWNDEDDYYGEHACEECKWN 243
           EFV  +W+ NKI  SE    Y     KN NC +NEK   WD  DEDDYYG++ CEECKWN
Sbjct: 185 EFVSYIWIKNKISLSEGDSSYGRKCDKNINCRVNEKINVWDSKDEDDYYGKYTCEECKWN 244

Query: 244 GEVFRFCNMLRTGGYS 253
            EV RFC MLRTG +S
Sbjct: 245 NEVLRFCKMLRTGRFS 260

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BLAST of ClCG11G013100 vs. NCBI nr
Match: gi|659107472|ref|XP_008453691.1| (PREDICTED: putative F-box protein At1g67623 [Cucumis melo])

HSP 1 Score: 355.9 bits (912), Expect = 5.8e-95
Identity = 177/260 (68.08%), Postives = 199/260 (76.54%), Query Frame = 1


Query: 1   MAPQLKTKSQALDSQISRRTKSMRM-----PVIKSLPNDLLIEVLAKVAASSYIDLIQAK 60
           MA   KTKS    + ISR T+  R       VIKSLPNDLL EVLAKVAASSY+DL+QAK
Sbjct: 1   MANHPKTKSLPFHTLISRTTQKNRTGVLSPTVIKSLPNDLLTEVLAKVAASSYVDLVQAK 60

Query: 61  LATKDFLEASNDGYVFRHVSLRNFRKLLWNNSPEFWSFMENCNNNENPESLYRKGMLEFF 120
           LATK FLEAS D Y+F+HVSL NF   LWNNSPEFWSF+E CNNNENPESLYRKGMLEFF
Sbjct: 61  LATKQFLEASKDRYIFQHVSLGNFENHLWNNSPEFWSFIETCNNNENPESLYRKGMLEFF 120

Query: 121 THCREASGLGYLKLSAQKGYVDACYVYGIIMYASNVKDDGLKYLKNCEMKLEYKMSECRG 180
           THC+EASGL YLKLSAQKGYVDACYV  +I+YAS  KD+G ++LKN E KL  KM+ECR 
Sbjct: 121 THCKEASGLAYLKLSAQKGYVDACYVCSVILYASKAKDEGFEFLKNHEAKLRNKMAECRW 180

Query: 181 RVKEFVWCLWVNNKICFS--ENGERYCSNVKN-NCMINEKRKGWDWNDEDDYYGEHACEE 240
           RVK FV  LW+ N+I  S  +  +R C   KN NC +NE+R  WDW DEDDYYGE+ CE+
Sbjct: 181 RVKRFVSYLWIKNRISSSGEDPNDRKCD--KNINCRVNERRNSWDWKDEDDYYGEYTCEK 240

Query: 241 CKWNGEVFRFCNMLRTGGYS 253
           CKWN EVFRFC MLRTG YS
Sbjct: 241 CKWNNEVFRFCKMLRTGRYS 258

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BLAST of ClCG11G013100 vs. NCBI nr
Match: gi|147773103|emb|CAN71689.1| (hypothetical protein VITISV_039291 [Vitis vinifera])

HSP 1 Score: 156.0 bits (393), Expect = 8.7e-35
Identity = 92/230 (40.00%), Postives = 135/230 (58.70%), Query Frame = 1


Query: 28  IKSLPNDLLIEVLAKVAASSYIDLIQAKLATKDFLEASNDGYVFRHVSLRNFRKL-LWNN 87
           I+SL +DLLIEVL +VA+SS+ DL  AKL+ ++FLEAS D +V +++S+  F  +  W  
Sbjct: 15  IESLSSDLLIEVLTRVASSSFTDLFNAKLSCRNFLEASKDTFVMKNISIEKFPTIPWWQV 74

Query: 88  SPEFWSFMENCNNNENPESLYRKGMLEFFTHCREASGLGYLKLSAQKGYVDACYVYGIIM 147
             E  SF++ C  + NPE LYR+GM+EFF+  +  S   YLK + + G+++A YVYGII+
Sbjct: 75  KDEVSSFLKACKESGNPEVLYRQGMMEFFSWKKVESXEEYLKRAMEMGHMEASYVYGIIL 134

Query: 148 Y---ASNVKDDGLKYLKNCEMKLEYKMSECRGRVKEFVWCLWVNNKICFSENGERYCSNV 207
                 + ++ G+K L    +K   K+ ECR R + F   +W+ N I   +    Y +N 
Sbjct: 135 LCKGGDSNEEQGMKLLN--AVKKSRKLGECRKRTRAFTLSMWIRNPIVKCQELTSYHANT 194

Query: 208 ---KNNCMINEKRKGWDW--NDED-DYYGEHACEECKWNGEVFRFCNMLR 248
              +NN  I  KR GW W  +DED D    + CE C W+ EV  FC + R
Sbjct: 195 CGRRNNGGIGGKR-GWPWIEDDEDKDVEEVNYCEACIWDDEVSLFCKLFR 241

[Close]

BLAST of ClCG11G013100 vs. NCBI nr
Match: gi|731376767|ref|XP_010656578.1| (PREDICTED: putative F-box protein At1g67623 [Vitis vinifera])

HSP 1 Score: 155.6 bits (392), Expect = 1.1e-34
Identity = 87/233 (37.34%), Postives = 132/233 (56.65%), Query Frame = 1


Query: 28  IKSLPNDLLIEVLAKVAASSYIDLIQAKLATKDFLEASNDGYVFRHVSLRNFRKL-LWNN 87
           I+ LP+DLLIEVL +VA SS+ DL  AKL+ ++FLEAS+D ++ +++S+  F  +  W  
Sbjct: 15  IEYLPSDLLIEVLTRVATSSFTDLFNAKLSCRNFLEASDDKFIMKNISIEKFPAIPWWQV 74

Query: 88  SPEFWSFMENCNNNENPESLYRKGMLEFFTHCREASGLGYLKLSAQKGYVDACYVYGIIM 147
             E  SF++ C  + NPE+LYR+GM+EFF+  +  SG  YLK + +  +++A YVYGII+
Sbjct: 75  KDEVSSFLKACKESGNPEALYRQGMMEFFSWKKVESGEEYLKRALEMEHMEASYVYGIIL 134

Query: 148 Y---ASNVKDDGLKYLKNCEMKLEYKMSECRGRVKEFVWCLWVNNKICFSE---NGERYC 207
                 + ++ G+K L    +K   K+ ECR + K F+  +W+ N I   +   N     
Sbjct: 135 LCKGGESNEEQGMKLLN--AVKKSRKLGECRKKTKAFILSMWIRNPIVKCQELVNHHAKT 194

Query: 208 SNVKNNCMINEKRKGWDW------NDEDDYYGEHACEECKWNGEVFRFCNMLR 248
              +NN  I  KR  W W      N++ D    + CE C W  EV  FC + R
Sbjct: 195 CGRRNNGGIGGKRGWWQWIDDREDNEDKDVEEVNYCEGCMWEDEVSLFCKLFR 245

The following BLAST results are available for this feature:

BLAST of ClCG11G013100 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FB79_ARATH	1.5e-18	27.88	Putative F-box protein At1g67623 OS=Arabidopsis thaliana GN=At1g67623 PE=3 SV=1	[more]
FB127_ARATH	5.9e-07	26.81	F-box protein At2g35280 OS=Arabidopsis thaliana GN=At2g35280 PE=2 SV=1	[more]

BLAST of ClCG11G013100 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LS96_CUCSA	6.2e-96	69.92	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025065 PE=4 SV=1	[more]
A5AV49_VITVI	6.1e-35	40.00	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_039291 PE=4 SV=1	[more]
B9I6Z5_POPTR	6.7e-34	35.44	F-box family protein OS=Populus trichocarpa GN=POPTR_0013s01020g PE=4 SV=1	[more]
A0A0B2QF57_GLYSO	5.0e-29	38.89	Putative F-box protein OS=Glycine soja GN=glysoja_006820 PE=4 SV=1	[more]
I1KMZ2_SOYBN	4.2e-28	35.04	Uncharacterized protein OS=Glycine max GN=GLYMA_07G247800 PE=4 SV=2	[more]

BLAST of ClCG11G013100 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G67623.1	8.4e-20	27.88	F-box family protein	[more]
AT1G74875.1	7.4e-16	26.75	FUNCTIONS IN: molecular_function unknown	[more]
AT2G35280.1	3.3e-08	26.81	F-box family protein	[more]

BLAST of ClCG11G013100 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449435498\|ref\|XP_004135532.1\|	8.0e-97	69.11	PREDICTED: putative F-box protein At1g67623 [Cucumis sativus]	[more]
gi\|449439561\|ref\|XP_004137554.1\|	8.9e-96	69.92	PREDICTED: putative F-box protein At1g67623 [Cucumis sativus]	[more]
gi\|659107472\|ref\|XP_008453691.1\|	5.8e-95	68.08	PREDICTED: putative F-box protein At1g67623 [Cucumis melo]	[more]
gi\|147773103\|emb\|CAN71689.1\|	8.7e-35	40.00	hypothetical protein VITISV_039291 [Vitis vinifera]	[more]
gi\|731376767\|ref\|XP_010656578.1\|	1.1e-34	37.34	PREDICTED: putative F-box protein At1g67623 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001810	F-box_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG11G013100.1	ClCG11G013100.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	unknown	SSF81383	F-box domain	coord: 18..85 score: 3.2
None	No IPR available	PANTHER	PTHR33784	FAMILY NOT NAMED	coord: 13..251 score: 1.1
None	No IPR available	PANTHER	PTHR33784:SF4	SUBFAMILY NOT NAMED	coord: 13..251 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG11G013100	MELO3C011806	Melon (DHL92) v3.5.1	mewcgB047
ClCG11G013100	Cla022913	Watermelon (97103) v1	wcgwmB103
ClCG11G013100	Cla97C11G219000	Watermelon (97103) v2	wcgwmbB064
ClCG11G013100	Bhi07G000981	Wax gourd	wcgwgoB171
ClCG11G013100	CSPI05G20820	Wild cucumber (PI 183967)	cpiwcgB369
ClCG11G013100	Cucsa.076300	Cucumber (Gy14) v1	cgywcgB076
ClCG11G013100	CmaCh04G013070	Cucurbita maxima (Rimu)	cmawcgB621
ClCG11G013100	CmoCh04G013730	Cucurbita moschata (Rifu)	cmowcgB624
ClCG11G013100	Lsi04G007390	Bottle gourd (USVL1VR-Ls)	lsiwcgB264
ClCG11G013100	CsGy5G020330	Cucumber (Gy14) v2	cgybwcgB327
ClCG11G013100	MELO3C034049.2	Melon (DHL92) v3.6.1	medwcgB047
ClCG11G013100	CsaV3_5G029620	Cucumber (Chinese Long) v3	cucwcgB375

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG11G013100	Cucurbita maxima (Rimu)	cmawcgB339
ClCG11G013100	Cucurbita moschata (Rifu)	cmowcgB337
ClCG11G013100	Cucumber (Chinese Long) v2	cuwcgB352
ClCG11G013100	Cucurbita pepo (Zucchini)	cpewcgB018
ClCG11G013100	Cucurbita pepo (Zucchini)	cpewcgB357
ClCG11G013100	Silver-seed gourd	carwcgB0698
ClCG11G013100	Silver-seed gourd	carwcgB0810