MELO3C009338 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C009338
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
Description50S ribosomal protein L11
Locationchr4 : 31597849 .. 31598778 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GCCGACGACACATCGTCGGGTGTGGAAGGCAAGTGAAAAACCCTAGCATAAATCAACCGAAAGCCTCTCCATTTTCTCTTCGCCGCTCTCTTTTAGTTCATCAGTGGCTGTGGTTGTGTTTCCTTCTGTGGAATCTCTCGAATCCACTACCCTTCCCGCCGCCGAATCATGCCTCCGAAGTTGGACCCTAGTCAGGTCGTTGAAGTCTTCGTTCGCGTCACCGGAGGTGAGGTCGGAGCCGCTAGTTCTCTCGCCCCCAAGATCGGTCCTCTCGGTCTTTCCCCTAAGAAGATTGGAGAAGACATTGCTAAAGAGACCGCCAAGGAATGGAAAGGTCTTAGGGTAACTGTAAAGCTCACCGTCCAAAATCGTCAGGCGAAGGTCTCCGTTGTTCCTTCTGCGGCGGCTTTGGTAATTAAGGCTTTGAAGGAGCCGGAACGTGACAGGAAGAAAACTAAGAACATCAAGCATAATGGGAATATTTCTCTTGATGATGTGATTGAGATTGCTAGGGTTATGCGGCCCAGGTCGATGGCTAAGGATCTCTCTGGCTCCGTCAAGGAGATTCTTGGTACTTGTGTGTCTGTTGGCTGTACTGTCGATGGCAAGGACCCGAAGGATCTTCAACAAGAGATTACTGATGGCGATGTTGAAATCCCCCAAGATTGAGAGTAAAACTTTCTTTGGCCACTCCTTTAGAATGAGGGATATTGAATTTACTTCTACATCCTTGTTTTATCAGTTTTGCTATTTAACGTAAGTTTTAGGGTGGTTTTTCTCTATTTCTCTCTTGTTTATCTGCGTTTTTTGTCGTTTTTTTTTTTTAAAGAAGCCTGAATTGGATTATTGCAATGAATATCAAAGCTTTATTTCTGATCTATCATTGGTTCAAGGAATGTATGAAGATTATCTGGTTAGATTTTTTTTTAA

mRNA sequence

GCCGACGACACATCGTCGGGTGTGGAAGGCAAGTGAAAAACCCTAGCATAAATCAACCGAAAGCCTCTCCATTTTCTCTTCGCCGCTCTCTTTTAGTTCATCAGTGGCTGTGGTTGTGTTTCCTTCTGTGGAATCTCTCGAATCCACTACCCTTCCCGCCGCCGAATCATGCCTCCGAAGTTGGACCCTAGTCAGGTCGTTGAAGTCTTCGTTCGCGTCACCGGAGGTGAGGTCGGAGCCGCTAGTTCTCTCGCCCCCAAGATCGGTCCTCTCGGTCTTTCCCCTAAGAAGATTGGAGAAGACATTGCTAAAGAGACCGCCAAGGAATGGAAAGGTCTTAGGGTAACTGTAAAGCTCACCGTCCAAAATCGTCAGGCGAAGGTCTCCGTTGTTCCTTCTGCGGCGGCTTTGGTAATTAAGGCTTTGAAGGAGCCGGAACGTGACAGGAAGAAAACTAAGAACATCAAGCATAATGGGAATATTTCTCTTGATGATGTGATTGAGATTGCTAGGGTTATGCGGCCCAGGTCGATGGCTAAGGATCTCTCTGGCTCCGTCAAGGAGATTCTTGGTACTTGTGTGTCTGTTGGCTGTACTGTCGATGGCAAGGACCCGAAGGATCTTCAACAAGAGATTACTGATGGCGATGTTGAAATCCCCCAAGATTGAGAGTAAAACTTTCTTTGGCCACTCCTTTAGAATGAGGGATATTGAATTTACTTCTACATCCTTGTTTTATCAGTTTTGCTATTTAACGTAAGTTTTAGGGTGGTTTTTCTCTATTTCTCTCTTGTTTATCTGCGTTTTTTGTCGTTTTTTTTTTTTAAAGAAGCCTGAATTGGATTATTGCAATGAATATCAAAGCTTTATTTCTGATCTATCATTGGTTCAAGGAATGTATGAAGATTATCTGGTTAGATTTTTTTTTAA

Coding sequence (CDS)

ATGCCTCCGAAGTTGGACCCTAGTCAGGTCGTTGAAGTCTTCGTTCGCGTCACCGGAGGTGAGGTCGGAGCCGCTAGTTCTCTCGCCCCCAAGATCGGTCCTCTCGGTCTTTCCCCTAAGAAGATTGGAGAAGACATTGCTAAAGAGACCGCCAAGGAATGGAAAGGTCTTAGGGTAACTGTAAAGCTCACCGTCCAAAATCGTCAGGCGAAGGTCTCCGTTGTTCCTTCTGCGGCGGCTTTGGTAATTAAGGCTTTGAAGGAGCCGGAACGTGACAGGAAGAAAACTAAGAACATCAAGCATAATGGGAATATTTCTCTTGATGATGTGATTGAGATTGCTAGGGTTATGCGGCCCAGGTCGATGGCTAAGGATCTCTCTGGCTCCGTCAAGGAGATTCTTGGTACTTGTGTGTCTGTTGGCTGTACTGTCGATGGCAAGGACCCGAAGGATCTTCAACAAGAGATTACTGATGGCGATGTTGAAATCCCCCAAGATTGA

Protein sequence

MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPRSMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD*
Homology
[Close]
BLAST of MELO3C009338 vs. Swiss-Prot
Match: RL121_ARATH (60S ribosomal protein L12-1 OS=Arabidopsis thaliana GN=RPL12A PE=2 SV=2)

HSP 1 Score: 301.6 bits (771), Expect = 5.3e-81
Identity = 148/166 (89.16%), Postives = 160/166 (96.39%), Query Frame = 1 

Query: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKLDPSQ+V+V+VRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKK KNIKHNGNIS DDV EIAR+MRPR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 167
           S+AK+LSG+V+EILGTCVSVGCTVDGKDPKD+QQEI DG+VEIP++
Sbjct: 121 SIAKELSGTVREILGTCVSVGCTVDGKDPKDIQQEIQDGEVEIPEN 166

[Close]
BLAST of MELO3C009338 vs. Swiss-Prot
Match: RL123_ARATH (60S ribosomal protein L12-3 OS=Arabidopsis thaliana GN=RPL12C PE=2 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 9.1e-81
Identity = 147/166 (88.55%), Postives = 159/166 (95.78%), Query Frame = 1 

Query: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKLDPSQ+V+V+VRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKK KNIKHNGNIS DDVIEIA++MRPR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVIEIAKIMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 167
           S+AK+LSG+VKEILGTCVSVGCTVDGKDPKDLQ+EI  GD++IP +
Sbjct: 121 SIAKELSGTVKEILGTCVSVGCTVDGKDPKDLQEEINSGDIDIPNE 166

[Close]
BLAST of MELO3C009338 vs. Swiss-Prot
Match: RL122_ARATH (60S ribosomal protein L12-2 OS=Arabidopsis thaliana GN=RPL12B PE=1 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 1.2e-80
Identity = 147/166 (88.55%), Postives = 160/166 (96.39%), Query Frame = 1 

Query: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKLDPSQ+V+V+VRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKK KNIKHNGNIS DDV EIAR+MRPR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 167
           S+AK+LSG+V+EILGTCVSVGCTVDGKDPKDLQQEI +G++EIP++
Sbjct: 121 SIAKELSGTVREILGTCVSVGCTVDGKDPKDLQQEIQEGEIEIPEN 166

[Close]
BLAST of MELO3C009338 vs. Swiss-Prot
Match: RL12_PRUAR (60S ribosomal protein L12 OS=Prunus armeniaca GN=RPL12 PE=2 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 1.3e-79
Identity = 149/166 (89.76%), Postives = 158/166 (95.18%), Query Frame = 1 

Query: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPK DPSQVV+V+VRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETA +WKGLRVT
Sbjct: 1   MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETANDWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKH+G+ISLDDVIEIA++M+ R
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHSGHISLDDVIEIAKIMKHR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 167
           SMAK+L+G+VKEIL TCVSVGCTVDGKDPKDLQQEI DGDVEIP D
Sbjct: 121 SMAKELAGTVKEILRTCVSVGCTVDGKDPKDLQQEIADGDVEIPLD 166

[Close]
BLAST of MELO3C009338 vs. Swiss-Prot
Match: RL12A_SCHPO (60S ribosomal protein L12-A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl1201 PE=3 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 4.1e-65
Identity = 120/166 (72.29%), Postives = 144/166 (86.75%), Query Frame = 1 

Query: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPK DP++V  +F+R  GGEV   S+LAPKIGPLGLSPKK+GEDIAK T K+WKGLRVT
Sbjct: 1   MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKAT-KDWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLT+QNRQA VSVVPSA+ALVIKALKEP RDRKK KN+ H+GN+SLD++IE+AR MR +
Sbjct: 61  VKLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVARTMRFK 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 167
           S+AK+LSG+VKEILGT  SVGCTVDGK+P D+Q+EI +G++EIPQ+
Sbjct: 121 SLAKELSGTVKEILGTAFSVGCTVDGKNPHDVQKEIDNGEIEIPQE 165

[Close]
BLAST of MELO3C009338 vs. TrEMBL
Match: A0A0A0KF33_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G445170 PE=3 SV=1)

HSP 1 Score: 325.5 bits (833), Expect = 3.8e-86
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 1 

Query: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 167
           SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD
Sbjct: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 166

[Close]
BLAST of MELO3C009338 vs. TrEMBL
Match: A0A0A0LAX8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G739040 PE=3 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 1.1e-85
Identity = 165/166 (99.40%), Postives = 166/166 (100.00%), Query Frame = 1 

Query: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 167
           SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEI+DGDVEIPQD
Sbjct: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEIPQD 166

[Close]
BLAST of MELO3C009338 vs. TrEMBL
Match: K4C9N4_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 317.8 bits (813), Expect = 8.0e-84
Identity = 160/166 (96.39%), Postives = 165/166 (99.40%), Query Frame = 1 

Query: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPK DPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKET+K+WKGLRVT
Sbjct: 1   MPPKFDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETSKDWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIA+VM+PR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIAKVMQPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 167
           SMAKDLSG+VKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD
Sbjct: 121 SMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 166

[Close]
BLAST of MELO3C009338 vs. TrEMBL
Match: A0A0S3SCN1_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G183800 PE=3 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 1.4e-83
Identity = 159/166 (95.78%), Postives = 164/166 (98.80%), Query Frame = 1 

Query: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPK DPSQVV+VFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAK+WKGLRVT
Sbjct: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 167
           SMAKDLSGS+KEILGTCVSVGCTVDGKDPKDLQQEITDGDVE+P D
Sbjct: 121 SMAKDLSGSIKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEVPLD 166

[Close]
BLAST of MELO3C009338 vs. TrEMBL
Match: A0A0L9V7M3_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g150600 PE=3 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 1.4e-83
Identity = 159/166 (95.78%), Postives = 164/166 (98.80%), Query Frame = 1 

Query: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPK DPSQVV+VFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAK+WKGLRVT
Sbjct: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 167
           SMAKDLSGS+KEILGTCVSVGCTVDGKDPKDLQQEITDGDVE+P D
Sbjct: 121 SMAKDLSGSIKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEVPLD 166

[Close]
BLAST of MELO3C009338 vs. TAIR10
Match: AT2G37190.1 (AT2G37190.1 Ribosomal protein L11 family protein)

HSP 1 Score: 301.6 bits (771), Expect = 3.0e-82
Identity = 148/166 (89.16%), Postives = 160/166 (96.39%), Query Frame = 1 

Query: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKLDPSQ+V+V+VRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKK KNIKHNGNIS DDV EIAR+MRPR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 167
           S+AK+LSG+V+EILGTCVSVGCTVDGKDPKD+QQEI DG+VEIP++
Sbjct: 121 SIAKELSGTVREILGTCVSVGCTVDGKDPKDIQQEIQDGEVEIPEN 166

[Close]
BLAST of MELO3C009338 vs. TAIR10
Match: AT5G60670.1 (AT5G60670.1 Ribosomal protein L11 family protein)

HSP 1 Score: 300.8 bits (769), Expect = 5.1e-82
Identity = 147/166 (88.55%), Postives = 159/166 (95.78%), Query Frame = 1 

Query: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKLDPSQ+V+V+VRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKK KNIKHNGNIS DDVIEIA++MRPR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVIEIAKIMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 167
           S+AK+LSG+VKEILGTCVSVGCTVDGKDPKDLQ+EI  GD++IP +
Sbjct: 121 SIAKELSGTVKEILGTCVSVGCTVDGKDPKDLQEEINSGDIDIPNE 166

[Close]
BLAST of MELO3C009338 vs. TAIR10
Match: AT3G53430.1 (AT3G53430.1 Ribosomal protein L11 family protein)

HSP 1 Score: 300.4 bits (768), Expect = 6.7e-82
Identity = 147/166 (88.55%), Postives = 160/166 (96.39%), Query Frame = 1 

Query: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKLDPSQ+V+V+VRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKK KNIKHNGNIS DDV EIAR+MRPR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 167
           S+AK+LSG+V+EILGTCVSVGCTVDGKDPKDLQQEI +G++EIP++
Sbjct: 121 SIAKELSGTVREILGTCVSVGCTVDGKDPKDLQQEIQEGEIEIPEN 166

[Close]
BLAST of MELO3C009338 vs. NCBI nr
Match: gi|449450998|ref|XP_004143249.1| (PREDICTED: 60S ribosomal protein L12-1-like [Cucumis sativus])

HSP 1 Score: 325.5 bits (833), Expect = 5.5e-86
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 1 

Query: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 167
           SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD
Sbjct: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 166

[Close]
BLAST of MELO3C009338 vs. NCBI nr
Match: gi|449440099|ref|XP_004137822.1| (PREDICTED: 60S ribosomal protein L12-1 [Cucumis sativus])

HSP 1 Score: 323.9 bits (829), Expect = 1.6e-85
Identity = 165/166 (99.40%), Postives = 166/166 (100.00%), Query Frame = 1 

Query: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 167
           SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEI+DGDVEIPQD
Sbjct: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEIPQD 166

[Close]
BLAST of MELO3C009338 vs. NCBI nr
Match: gi|460391326|ref|XP_004241274.1| (PREDICTED: 60S ribosomal protein L12 [Solanum lycopersicum])

HSP 1 Score: 317.8 bits (813), Expect = 1.2e-83
Identity = 160/166 (96.39%), Postives = 165/166 (99.40%), Query Frame = 1 

Query: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPK DPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKET+K+WKGLRVT
Sbjct: 1   MPPKFDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETSKDWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIA+VM+PR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIAKVMQPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 167
           SMAKDLSG+VKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD
Sbjct: 121 SMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 166

[Close]
BLAST of MELO3C009338 vs. NCBI nr
Match: gi|920708682|gb|KOM50679.1| (hypothetical protein LR48_Vigan08g150600 [Vigna angularis])

HSP 1 Score: 317.0 bits (811), Expect = 2.0e-83
Identity = 159/166 (95.78%), Postives = 164/166 (98.80%), Query Frame = 1 

Query: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPK DPSQVV+VFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAK+WKGLRVT
Sbjct: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 167
           SMAKDLSGS+KEILGTCVSVGCTVDGKDPKDLQQEITDGDVE+P D
Sbjct: 121 SMAKDLSGSIKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEVPLD 166

[Close]
BLAST of MELO3C009338 vs. NCBI nr
Match: gi|225439982|ref|XP_002281255.1| (PREDICTED: 60S ribosomal protein L12 [Vitis vinifera])

HSP 1 Score: 317.0 bits (811), Expect = 2.0e-83
Identity = 159/166 (95.78%), Postives = 164/166 (98.80%), Query Frame = 1 

Query: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPK DPSQVV+V+VRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAK+WKGLRVT
Sbjct: 1   MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIA++MRPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIAKIMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 167
           SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEI DGDVEIPQD
Sbjct: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEIADGDVEIPQD 166

The following BLAST results are available for this feature:
BLAST of MELO3C009338 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RL121_ARATH5.3e-8189.1660S ribosomal protein L12-1 OS=Arabidopsis thaliana GN=RPL12A PE=2 SV=2[more]
RL123_ARATH9.1e-8188.5560S ribosomal protein L12-3 OS=Arabidopsis thaliana GN=RPL12C PE=2 SV=1[more]
RL122_ARATH1.2e-8088.5560S ribosomal protein L12-2 OS=Arabidopsis thaliana GN=RPL12B PE=1 SV=1[more]
RL12_PRUAR1.3e-7989.7660S ribosomal protein L12 OS=Prunus armeniaca GN=RPL12 PE=2 SV=1[more]
RL12A_SCHPO4.1e-6572.2960S ribosomal protein L12-A OS=Schizosaccharomyces pombe (strain 972 / ATCC 2484... [more]
BLAST of MELO3C009338 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KF33_CUCSA3.8e-86100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G445170 PE=3 SV=1[more]
A0A0A0LAX8_CUCSA1.1e-8599.40Uncharacterized protein OS=Cucumis sativus GN=Csa_3G739040 PE=3 SV=1[more]
K4C9N4_SOLLC8.0e-8496.39Uncharacterized protein OS=Solanum lycopersicum PE=3 SV=1[more]
A0A0S3SCN1_PHAAN1.4e-8395.78Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G183800 PE=... [more]
A0A0L9V7M3_PHAAN1.4e-8395.78Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g150600 PE=3 SV=1[more]
BLAST of MELO3C009338 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G37190.13.0e-8289.16 Ribosomal protein L11 family protein[more]
AT5G60670.15.1e-8288.55 Ribosomal protein L11 family protein[more]
AT3G53430.16.7e-8288.55 Ribosomal protein L11 family protein[more]
BLAST of MELO3C009338 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449450998|ref|XP_004143249.1|5.5e-86100.00PREDICTED: 60S ribosomal protein L12-1-like [Cucumis sativus][more]
gi|449440099|ref|XP_004137822.1|1.6e-8599.40PREDICTED: 60S ribosomal protein L12-1 [Cucumis sativus][more]
gi|460391326|ref|XP_004241274.1|1.2e-8396.39PREDICTED: 60S ribosomal protein L12 [Solanum lycopersicum][more]
gi|920708682|gb|KOM50679.1|2.0e-8395.78hypothetical protein LR48_Vigan08g150600 [Vigna angularis][more]
gi|225439982|ref|XP_002281255.1|2.0e-8395.78PREDICTED: 60S ribosomal protein L12 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000911Ribosomal_L11/L12
IPR020783Ribosomal_L11_C
IPR020784Ribosomal_L11_N
IPR020785Ribosomal_L11_CS
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0000027 ribosomal large subunit assembly
cellular_component GO:0005840 ribosome
cellular_component GO:0022625 cytosolic large ribosomal subunit
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0019843 rRNA binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU45422melon EST collection version 4.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C009338T1MELO3C009338T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU45422MU45422transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000911Ribosomal protein L11/L12HAMAPMF_00736Ribosomal_L11coord: 9..146
score: 15
IPR000911Ribosomal protein L11/L12PANTHERPTHR1166160S RIBOSOMAL PROTEIN L12coord: 1..166
score: 6.6E
IPR000911Ribosomal protein L11/L12SMARTSM00649rl11ccoord: 13..145
score: 1.8
IPR020783Ribosomal protein L11, C-terminalGENE3DG3DSA:1.10.10.250coord: 82..145
score: 1.8
IPR020783Ribosomal protein L11, C-terminalPFAMPF00298Ribosomal_L11coord: 75..144
score: 8.4
IPR020783Ribosomal protein L11, C-terminalunknownSSF46906Ribosomal protein L11, C-terminal domaincoord: 76..149
score: 2.09
IPR020784Ribosomal protein L11, N-terminalGENE3DG3DSA:3.30.1550.10coord: 1..81
score: 3.6
IPR020784Ribosomal protein L11, N-terminalPFAMPF03946Ribosomal_L11_Ncoord: 15..70
score: 7.5
IPR020784Ribosomal protein L11, N-terminalunknownSSF54747Ribosomal L11/L12e N-terminal domaincoord: 1..87
score: 5.1
IPR020785Ribosomal protein L11, conserved sitePROSITEPS00359RIBOSOMAL_L11coord: 131..146
scor
NoneNo IPR availablePANTHERPTHR11661:SF6SUBFAMILY NOT NAMEDcoord: 1..166
score: 6.6E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C009338Csa6G445170Cucumber (Chinese Long) v2cumeB484
MELO3C009338Csa3G739040Cucumber (Chinese Long) v2cumeB224
MELO3C009338Cla008741Watermelon (97103) v1mewmB381
MELO3C009338Cla018289Watermelon (97103) v1mewmB379
MELO3C009338Cla017820Watermelon (97103) v1mewmB346
MELO3C009338ClCG04G009040Watermelon (Charleston Gray)mewcgB330
MELO3C009338ClCG10G020320Watermelon (Charleston Gray)mewcgB315
MELO3C009338ClCG02G021160Watermelon (Charleston Gray)mewcgB327
MELO3C009338Cla97C04G075730Watermelon (97103) v2mewmbB330
MELO3C009338Cla97C10G203500Watermelon (97103) v2mewmbB316
MELO3C009338Cla97C02G047200Watermelon (97103) v2mewmbB326
MELO3C009338Bhi10G000447Wax gourdmewgoB416
MELO3C009338Bhi11G001784Wax gourdmewgoB387
MELO3C009338Bhi03G001316Wax gourdmewgoB424
MELO3C009338CSPI03G33200Wild cucumber (PI 183967)cpimeB216
MELO3C009338Cucsa.124370Cucumber (Gy14) v1cgymeB191
MELO3C009338Cucsa.306920Cucumber (Gy14) v1cgymeB504
MELO3C009338CmaCh07G009250Cucurbita maxima (Rimu)cmameB789
MELO3C009338CmaCh14G002090Cucurbita maxima (Rimu)cmameB229
MELO3C009338CmaCh06G003760Cucurbita maxima (Rimu)cmameB755
MELO3C009338CmoCh07G009700Cucurbita moschata (Rifu)cmomeB776
MELO3C009338CmoCh06G003720Cucurbita moschata (Rifu)cmomeB747
MELO3C009338CmoCh03G012370Cucurbita moschata (Rifu)cmomeB591
MELO3C009338CmoCh14G002010Cucurbita moschata (Rifu)cmomeB215
MELO3C009338Lsi01G013440Bottle gourd (USVL1VR-Ls)lsimeB139
MELO3C009338Lsi03G020280Bottle gourd (USVL1VR-Ls)lsimeB260
MELO3C009338Lsi10G012670Bottle gourd (USVL1VR-Ls)lsimeB070
MELO3C009338Cp4.1LG10g04680Cucurbita pepo (Zucchini)cpemeB055
MELO3C009338Cp4.1LG03g01880Cucurbita pepo (Zucchini)cpemeB571
MELO3C009338Cp4.1LG19g04010Cucurbita pepo (Zucchini)cpemeB442
MELO3C009338CsGy6G023780Cucumber (Gy14) v2cgybmeB426
MELO3C009338CsGy3G030890Cucumber (Gy14) v2cgybmeB184
MELO3C009338Carg00983Silver-seed gourdcarmeB0161
MELO3C009338Carg25790Silver-seed gourdcarmeB0425
MELO3C009338Carg15271Silver-seed gourdcarmeB0552
MELO3C009338Carg03769Silver-seed gourdcarmeB0251
MELO3C009338CsaV3_3G035780Cucumber (Chinese Long) v3cucmeB218
MELO3C009338CsaV3_6G039570Cucumber (Chinese Long) v3cucmeB497
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C009338Cucurbita pepo (Zucchini)cpemeB276
MELO3C009338Cucurbita pepo (Zucchini)cpemeB796
MELO3C009338Bottle gourd (USVL1VR-Ls)lsimeB483
MELO3C009338Cucumber (Gy14) v2cgybmeB346
MELO3C009338Cucumber (Gy14) v2cgybmeB425
MELO3C009338Silver-seed gourdcarmeB0347
MELO3C009338Cucumber (Chinese Long) v3cucmeB496
MELO3C009338Wax gourdmewgoB373
MELO3C009338Melon (DHL92) v3.5.1memeB048
MELO3C009338Cucumber (Gy14) v1cgymeB510
MELO3C009338Cucumber (Gy14) v1cgymeB632
MELO3C009338Cucurbita maxima (Rimu)cmameB520
MELO3C009338Cucurbita maxima (Rimu)cmameB571
MELO3C009338Cucurbita maxima (Rimu)cmameB601
MELO3C009338Cucurbita moschata (Rifu)cmomeB508
MELO3C009338Cucurbita moschata (Rifu)cmomeB560
MELO3C009338Wild cucumber (PI 183967)cpimeB396
MELO3C009338Wild cucumber (PI 183967)cpimeB486
MELO3C009338Wild cucumber (PI 183967)cpimeB487
MELO3C009338Cucumber (Chinese Long) v2cumeB486
MELO3C009338Watermelon (Charleston Gray)mewcgB355