CmaCh06G003760 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh06G003760
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	60S ribosomal protein L12
Location	Cma_Chr06 : 1743248 .. 1743748 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTCCGAAGTTTGACCCTAGTCAGGTGGTGGATGTTTTCGTTCGCGTCACCGGAGGTGAGGTTGGAGCAGCCAGTTCTCTTGCTCCGAAGATTGGTCCTCTCGGTCTTTCTCCTAAGAAGATTGGAGAAGACATTGCTAAAGAGACCGCAAAGGAATGGAAAGGTCTTAGAGTTACTGTAAAGCTCACTGTCCAAAATCGTCAGGCGAAGGTCTCCGTTGTTCCTTCGGCGGCGGCTTTGGTAATTAAGGCGTTGAAGGAGCCGGAGCGTGACCGGAAGAAGACTAAGAATATCAAGCATAATGGCAACATTTCTCTTGATGATGTGATTGAAATTGCTAGGGTTATGCGGCCTAGATCGATGGCTAAGGACCTCTCTGGCTCCGTCAAGGAGATCCTTGGAACTTGCGTGTCTGTTGGTTGTACTGTTGATGGCAAGGACCCTAAGGATCTTCAACAGGAGATTAACGATGGCGACGTTGAAGTGCCCCAAGATTGA

mRNA sequence

ATGCCTCCGAAGTTTGACCCTAGTCAGGTGGTGGATGTTTTCGTTCGCGTCACCGGAGGTGAGGTTGGAGCAGCCAGTTCTCTTGCTCCGAAGATTGGTCCTCTCGGTCTTTCTCCTAAGAAGATTGGAGAAGACATTGCTAAAGAGACCGCAAAGGAATGGAAAGGTCTTAGAGTTACTGTAAAGCTCACTGTCCAAAATCGTCAGGCGAAGGTCTCCGTTGTTCCTTCGGCGGCGGCTTTGGTAATTAAGGCGTTGAAGGAGCCGGAGCGTGACCGGAAGAAGACTAAGAATATCAAGCATAATGGCAACATTTCTCTTGATGATGTGATTGAAATTGCTAGGGTTATGCGGCCTAGATCGATGGCTAAGGACCTCTCTGGCTCCGTCAAGGAGATCCTTGGAACTTGCGTGTCTGTTGGTTGTACTGTTGATGGCAAGGACCCTAAGGATCTTCAACAGGAGATTAACGATGGCGACGTTGAAGTGCCCCAAGATTGA

Coding sequence (CDS)

ATGCCTCCGAAGTTTGACCCTAGTCAGGTGGTGGATGTTTTCGTTCGCGTCACCGGAGGTGAGGTTGGAGCAGCCAGTTCTCTTGCTCCGAAGATTGGTCCTCTCGGTCTTTCTCCTAAGAAGATTGGAGAAGACATTGCTAAAGAGACCGCAAAGGAATGGAAAGGTCTTAGAGTTACTGTAAAGCTCACTGTCCAAAATCGTCAGGCGAAGGTCTCCGTTGTTCCTTCGGCGGCGGCTTTGGTAATTAAGGCGTTGAAGGAGCCGGAGCGTGACCGGAAGAAGACTAAGAATATCAAGCATAATGGCAACATTTCTCTTGATGATGTGATTGAAATTGCTAGGGTTATGCGGCCTAGATCGATGGCTAAGGACCTCTCTGGCTCCGTCAAGGAGATCCTTGGAACTTGCGTGTCTGTTGGTTGTACTGTTGATGGCAAGGACCCTAAGGATCTTCAACAGGAGATTAACGATGGCGACGTTGAAGTGCCCCAAGATTGA

Protein sequence

MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPRSMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEINDGDVEVPQD

Homology

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BLAST of CmaCh06G003760 vs. Swiss-Prot
Match: RL123_ARATH (60S ribosomal protein L12-3 OS=Arabidopsis thaliana GN=RPL12C PE=2 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 5.9e-80
Identity = 147/166 (88.55%), Postives = 161/166 (96.99%), Query Frame = 1


Query: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPK DPSQ+VDV+VRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKK KNIKHNGNIS DDVIEIA++MRPR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVIEIAKIMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEINDGDVEVPQD 167
           S+AK+LSG+VKEILGTCVSVGCTVDGKDPKDLQ+EIN GD+++P +
Sbjct: 121 SIAKELSGTVKEILGTCVSVGCTVDGKDPKDLQEEINSGDIDIPNE 166

[Close]

BLAST of CmaCh06G003760 vs. Swiss-Prot
Match: RL121_ARATH (60S ribosomal protein L12-1 OS=Arabidopsis thaliana GN=RPL12A PE=2 SV=2)

HSP 1 Score: 297.0 bits (759), Expect = 1.3e-79
Identity = 147/166 (88.55%), Postives = 161/166 (96.99%), Query Frame = 1


Query: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPK DPSQ+VDV+VRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKK KNIKHNGNIS DDV EIAR+MRPR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEINDGDVEVPQD 167
           S+AK+LSG+V+EILGTCVSVGCTVDGKDPKD+QQEI DG+VE+P++
Sbjct: 121 SIAKELSGTVREILGTCVSVGCTVDGKDPKDIQQEIQDGEVEIPEN 166

[Close]

BLAST of CmaCh06G003760 vs. Swiss-Prot
Match: RL122_ARATH (60S ribosomal protein L12-2 OS=Arabidopsis thaliana GN=RPL12B PE=1 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 2.9e-79
Identity = 146/166 (87.95%), Postives = 161/166 (96.99%), Query Frame = 1


Query: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPK DPSQ+VDV+VRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKK KNIKHNGNIS DDV EIAR+MRPR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEINDGDVEVPQD 167
           S+AK+LSG+V+EILGTCVSVGCTVDGKDPKDLQQEI +G++E+P++
Sbjct: 121 SIAKELSGTVREILGTCVSVGCTVDGKDPKDLQQEIQEGEIEIPEN 166

[Close]

BLAST of CmaCh06G003760 vs. Swiss-Prot
Match: RL12_PRUAR (60S ribosomal protein L12 OS=Prunus armeniaca GN=RPL12 PE=2 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 5.0e-79
Identity = 150/166 (90.36%), Postives = 161/166 (96.99%), Query Frame = 1


Query: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKFDPSQVVDV+VRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETA +WKGLRVT
Sbjct: 1   MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETANDWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKH+G+ISLDDVIEIA++M+ R
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHSGHISLDDVIEIAKIMKHR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEINDGDVEVPQD 167
           SMAK+L+G+VKEIL TCVSVGCTVDGKDPKDLQQEI DGDVE+P D
Sbjct: 121 SMAKELAGTVKEILRTCVSVGCTVDGKDPKDLQQEIADGDVEIPLD 166

[Close]

BLAST of CmaCh06G003760 vs. Swiss-Prot
Match: RL12A_SCHPO (60S ribosomal protein L12-A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl1201 PE=3 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 1.6e-64
Identity = 120/166 (72.29%), Postives = 148/166 (89.16%), Query Frame = 1


Query: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKFDP++V  +F+R  GGEV   S+LAPKIGPLGLSPKK+GEDIAK T K+WKGLRVT
Sbjct: 1   MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKAT-KDWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLT+QNRQA VSVVPSA+ALVIKALKEP RDRKK KN+ H+GN+SLD++IE+AR MR +
Sbjct: 61  VKLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVARTMRFK 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEINDGDVEVPQD 167
           S+AK+LSG+VKEILGT  SVGCTVDGK+P D+Q+EI++G++E+PQ+
Sbjct: 121 SLAKELSGTVKEILGTAFSVGCTVDGKNPHDVQKEIDNGEIEIPQE 165

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BLAST of CmaCh06G003760 vs. TrEMBL
Match: A0A0A0LAX8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G739040 PE=3 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 2.3e-83
Identity = 162/166 (97.59%), Postives = 165/166 (99.40%), Query Frame = 1


Query: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPK DPSQVV+VFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEINDGDVEVPQD 167
           SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEI+DGDVE+PQD
Sbjct: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEIPQD 166

[Close]

BLAST of CmaCh06G003760 vs. TrEMBL
Match: A0A0A0KF33_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G445170 PE=3 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 3.0e-83
Identity = 162/166 (97.59%), Postives = 164/166 (98.80%), Query Frame = 1


Query: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPK DPSQVV+VFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEINDGDVEVPQD 167
           SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEI DGDVE+PQD
Sbjct: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 166

[Close]

BLAST of CmaCh06G003760 vs. TrEMBL
Match: A5C1K6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0040g01870 PE=3 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 5.2e-83
Identity = 160/166 (96.39%), Postives = 165/166 (99.40%), Query Frame = 1


Query: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKFDPSQVVDV+VRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAK+WKGLRVT
Sbjct: 1   MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIA++MRPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIAKIMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEINDGDVEVPQD 167
           SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEI DGDVE+PQD
Sbjct: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEIADGDVEIPQD 166

[Close]

BLAST of CmaCh06G003760 vs. TrEMBL
Match: A0A0S3SCN1_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G183800 PE=3 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 6.7e-83
Identity = 161/166 (96.99%), Postives = 164/166 (98.80%), Query Frame = 1


Query: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAK+WKGLRVT
Sbjct: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEINDGDVEVPQD 167
           SMAKDLSGS+KEILGTCVSVGCTVDGKDPKDLQQEI DGDVEVP D
Sbjct: 121 SMAKDLSGSIKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEVPLD 166

[Close]

BLAST of CmaCh06G003760 vs. TrEMBL
Match: A0A0L9V7M3_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g150600 PE=3 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 6.7e-83
Identity = 161/166 (96.99%), Postives = 164/166 (98.80%), Query Frame = 1


Query: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAK+WKGLRVT
Sbjct: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEINDGDVEVPQD 167
           SMAKDLSGS+KEILGTCVSVGCTVDGKDPKDLQQEI DGDVEVP D
Sbjct: 121 SMAKDLSGSIKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEVPLD 166

[Close]

BLAST of CmaCh06G003760 vs. TAIR10
Match: AT5G60670.1 (AT5G60670.1 Ribosomal protein L11 family protein)

HSP 1 Score: 298.1 bits (762), Expect = 3.3e-81
Identity = 147/166 (88.55%), Postives = 161/166 (96.99%), Query Frame = 1


Query: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPK DPSQ+VDV+VRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKK KNIKHNGNIS DDVIEIA++MRPR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVIEIAKIMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEINDGDVEVPQD 167
           S+AK+LSG+VKEILGTCVSVGCTVDGKDPKDLQ+EIN GD+++P +
Sbjct: 121 SIAKELSGTVKEILGTCVSVGCTVDGKDPKDLQEEINSGDIDIPNE 166

[Close]

BLAST of CmaCh06G003760 vs. TAIR10
Match: AT2G37190.1 (AT2G37190.1 Ribosomal protein L11 family protein)

HSP 1 Score: 297.0 bits (759), Expect = 7.4e-81
Identity = 147/166 (88.55%), Postives = 161/166 (96.99%), Query Frame = 1


Query: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPK DPSQ+VDV+VRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKK KNIKHNGNIS DDV EIAR+MRPR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEINDGDVEVPQD 167
           S+AK+LSG+V+EILGTCVSVGCTVDGKDPKD+QQEI DG+VE+P++
Sbjct: 121 SIAKELSGTVREILGTCVSVGCTVDGKDPKDIQQEIQDGEVEIPEN 166

[Close]

BLAST of CmaCh06G003760 vs. TAIR10
Match: AT3G53430.1 (AT3G53430.1 Ribosomal protein L11 family protein)

HSP 1 Score: 295.8 bits (756), Expect = 1.6e-80
Identity = 146/166 (87.95%), Postives = 161/166 (96.99%), Query Frame = 1


Query: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPK DPSQ+VDV+VRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKK KNIKHNGNIS DDV EIAR+MRPR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEINDGDVEVPQD 167
           S+AK+LSG+V+EILGTCVSVGCTVDGKDPKDLQQEI +G++E+P++
Sbjct: 121 SIAKELSGTVREILGTCVSVGCTVDGKDPKDLQQEIQEGEIEIPEN 166

[Close]

BLAST of CmaCh06G003760 vs. NCBI nr
Match: gi|449440099|ref|XP_004137822.1| (PREDICTED: 60S ribosomal protein L12-1 [Cucumis sativus])

HSP 1 Score: 316.2 bits (809), Expect = 3.3e-83
Identity = 162/166 (97.59%), Postives = 165/166 (99.40%), Query Frame = 1


Query: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPK DPSQVV+VFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEINDGDVEVPQD 167
           SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEI+DGDVE+PQD
Sbjct: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEIPQD 166

[Close]

BLAST of CmaCh06G003760 vs. NCBI nr
Match: gi|449450998|ref|XP_004143249.1| (PREDICTED: 60S ribosomal protein L12-1-like [Cucumis sativus])

HSP 1 Score: 315.8 bits (808), Expect = 4.3e-83
Identity = 162/166 (97.59%), Postives = 164/166 (98.80%), Query Frame = 1


Query: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPK DPSQVV+VFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEINDGDVEVPQD 167
           SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEI DGDVE+PQD
Sbjct: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 166

[Close]

BLAST of CmaCh06G003760 vs. NCBI nr
Match: gi|225439982|ref|XP_002281255.1| (PREDICTED: 60S ribosomal protein L12 [Vitis vinifera])

HSP 1 Score: 315.1 bits (806), Expect = 7.4e-83
Identity = 160/166 (96.39%), Postives = 165/166 (99.40%), Query Frame = 1


Query: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKFDPSQVVDV+VRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAK+WKGLRVT
Sbjct: 1   MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIA++MRPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIAKIMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEINDGDVEVPQD 167
           SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEI DGDVE+PQD
Sbjct: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEIADGDVEIPQD 166

[Close]

BLAST of CmaCh06G003760 vs. NCBI nr
Match: gi|947081128|gb|KRH29917.1| (hypothetical protein GLYMA_11G146300 [Glycine max])

HSP 1 Score: 314.7 bits (805), Expect = 9.7e-83
Identity = 160/166 (96.39%), Postives = 165/166 (99.40%), Query Frame = 1


Query: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKFDPSQ+VDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAK+WKGLRVT
Sbjct: 1   MPPKFDPSQIVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEINDGDVEVPQD 167
           SMAKDLSGS+KEILGTCVSVGCTVDGKDPKDLQQEI+DGDVEVP D
Sbjct: 121 SMAKDLSGSIKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEVPLD 166

[Close]

BLAST of CmaCh06G003760 vs. NCBI nr
Match: gi|920708682|gb|KOM50679.1| (hypothetical protein LR48_Vigan08g150600 [Vigna angularis])

HSP 1 Score: 314.7 bits (805), Expect = 9.7e-83
Identity = 161/166 (96.99%), Postives = 164/166 (98.80%), Query Frame = 1


Query: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAK+WKGLRVT
Sbjct: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEINDGDVEVPQD 167
           SMAKDLSGS+KEILGTCVSVGCTVDGKDPKDLQQEI DGDVEVP D
Sbjct: 121 SMAKDLSGSIKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEVPLD 166

The following BLAST results are available for this feature:

BLAST of CmaCh06G003760 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL123_ARATH	5.9e-80	88.55	60S ribosomal protein L12-3 OS=Arabidopsis thaliana GN=RPL12C PE=2 SV=1	[more]
RL121_ARATH	1.3e-79	88.55	60S ribosomal protein L12-1 OS=Arabidopsis thaliana GN=RPL12A PE=2 SV=2	[more]
RL122_ARATH	2.9e-79	87.95	60S ribosomal protein L12-2 OS=Arabidopsis thaliana GN=RPL12B PE=1 SV=1	[more]
RL12_PRUAR	5.0e-79	90.36	60S ribosomal protein L12 OS=Prunus armeniaca GN=RPL12 PE=2 SV=1	[more]
RL12A_SCHPO	1.6e-64	72.29	60S ribosomal protein L12-A OS=Schizosaccharomyces pombe (strain 972 / ATCC 2484...	[more]

BLAST of CmaCh06G003760 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAX8_CUCSA	2.3e-83	97.59	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G739040 PE=3 SV=1	[more]
A0A0A0KF33_CUCSA	3.0e-83	97.59	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G445170 PE=3 SV=1	[more]
A5C1K6_VITVI	5.2e-83	96.39	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0040g01870 PE=3 SV=...	[more]
A0A0S3SCN1_PHAAN	6.7e-83	96.99	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G183800 PE=...	[more]
A0A0L9V7M3_PHAAN	6.7e-83	96.99	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g150600 PE=3 SV=1	[more]

BLAST of CmaCh06G003760 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G60670.1	3.3e-81	88.55	Ribosomal protein L11 family protein	[more]
AT2G37190.1	7.4e-81	88.55	Ribosomal protein L11 family protein	[more]
AT3G53430.1	1.6e-80	87.95	Ribosomal protein L11 family protein	[more]

BLAST of CmaCh06G003760 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449440099\|ref\|XP_004137822.1\|	3.3e-83	97.59	PREDICTED: 60S ribosomal protein L12-1 [Cucumis sativus]	[more]
gi\|449450998\|ref\|XP_004143249.1\|	4.3e-83	97.59	PREDICTED: 60S ribosomal protein L12-1-like [Cucumis sativus]	[more]
gi\|225439982\|ref\|XP_002281255.1\|	7.4e-83	96.39	PREDICTED: 60S ribosomal protein L12 [Vitis vinifera]	[more]
gi\|947081128\|gb\|KRH29917.1\|	9.7e-83	96.39	hypothetical protein GLYMA_11G146300 [Glycine max]	[more]
gi\|920708682\|gb\|KOM50679.1\|	9.7e-83	96.99	hypothetical protein LR48_Vigan08g150600 [Vigna angularis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000911	Ribosomal_L11/L12
IPR020783	Ribosomal_L11_C
IPR020784	Ribosomal_L11_N
IPR020785	Ribosomal_L11_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0000027	ribosomal large subunit assembly
cellular_component	GO:0005840	ribosome
cellular_component	GO:0022625	cytosolic large ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0019843	rRNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G003760.1	CmaCh06G003760.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000911	Ribosomal protein L11/L12	HAMAP	MF_00736	Ribosomal_L11	coord: 9..146 score: 15
IPR000911	Ribosomal protein L11/L12	PANTHER	PTHR11661	60S RIBOSOMAL PROTEIN L12	coord: 1..166 score: 1.4E
IPR000911	Ribosomal protein L11/L12	SMART	SM00649	rl11c	coord: 13..145 score: 1.8
IPR020783	Ribosomal protein L11, C-terminal	GENE3D	G3DSA:1.10.10.250		coord: 82..145 score: 1.8
IPR020783	Ribosomal protein L11, C-terminal	PFAM	PF00298	Ribosomal_L11	coord: 75..144 score: 8.4
IPR020783	Ribosomal protein L11, C-terminal	unknown	SSF46906	Ribosomal protein L11, C-terminal domain	coord: 76..149 score: 2.09
IPR020784	Ribosomal protein L11, N-terminal	GENE3D	G3DSA:3.30.1550.10		coord: 1..81 score: 9.4
IPR020784	Ribosomal protein L11, N-terminal	PFAM	PF03946	Ribosomal_L11_N	coord: 15..70 score: 7.5
IPR020784	Ribosomal protein L11, N-terminal	unknown	SSF54747	Ribosomal L11/L12e N-terminal domain	coord: 1..87 score: 3.92
IPR020785	Ribosomal protein L11, conserved site	PROSITE	PS00359	RIBOSOMAL_L11	coord: 131..146 scor
None	No IPR available	PANTHER	PTHR11661:SF6	SUBFAMILY NOT NAMED	coord: 1..166 score: 1.4E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh06G003760	Cucsa.306920	Cucumber (Gy14) v1	cgycmaB0846
CmaCh06G003760	Cucsa.124370	Cucumber (Gy14) v1	cgycmaB0329
CmaCh06G003760	Cla017820	Watermelon (97103) v1	cmawmB788
CmaCh06G003760	Cla018289	Watermelon (97103) v1	cmawmB806
CmaCh06G003760	Cla008741	Watermelon (97103) v1	cmawmB807
CmaCh06G003760	Csa6G445170	Cucumber (Chinese Long) v2	cmacuB840
CmaCh06G003760	Csa3G739040	Cucumber (Chinese Long) v2	cmacuB815
CmaCh06G003760	MELO3C009338	Melon (DHL92) v3.5.1	cmameB755
CmaCh06G003760	ClCG02G021160	Watermelon (Charleston Gray)	cmawcgB734
CmaCh06G003760	ClCG04G009040	Watermelon (Charleston Gray)	cmawcgB736
CmaCh06G003760	ClCG10G020320	Watermelon (Charleston Gray)	cmawcgB726
CmaCh06G003760	CSPI03G33200	Wild cucumber (PI 183967)	cmacpiB827
CmaCh06G003760	CmoCh14G002010	Cucurbita moschata (Rifu)	cmacmoB792
CmaCh06G003760	CmoCh03G012370	Cucurbita moschata (Rifu)	cmacmoB827
CmaCh06G003760	CmoCh06G003720	Cucurbita moschata (Rifu)	cmacmoB829
CmaCh06G003760	CmoCh07G009700	Cucurbita moschata (Rifu)	cmacmoB836
CmaCh06G003760	Lsi03G020280	Bottle gourd (USVL1VR-Ls)	cmalsiB754
CmaCh06G003760	Lsi01G013440	Bottle gourd (USVL1VR-Ls)	cmalsiB747
CmaCh06G003760	Lsi10G012670	Bottle gourd (USVL1VR-Ls)	cmalsiB744
CmaCh06G003760	Cp4.1LG10g04680	Cucurbita pepo (Zucchini)	cmacpeB808
CmaCh06G003760	Cp4.1LG19g04010	Cucurbita pepo (Zucchini)	cmacpeB829
CmaCh06G003760	Cp4.1LG03g01880	Cucurbita pepo (Zucchini)	cmacpeB830
CmaCh06G003760	MELO3C009338.2	Melon (DHL92) v3.6.1	cmamedB855
CmaCh06G003760	CsaV3_3G035780	Cucumber (Chinese Long) v3	cmacucB0966
CmaCh06G003760	CsaV3_6G039570	Cucumber (Chinese Long) v3	cmacucB0994
CmaCh06G003760	Cla97C04G075730	Watermelon (97103) v2	cmawmbB855
CmaCh06G003760	Cla97C02G047200	Watermelon (97103) v2	cmawmbB850
CmaCh06G003760	Cla97C10G203500	Watermelon (97103) v2	cmawmbB844
CmaCh06G003760	Bhi03G001316	Wax gourd	cmawgoB1035
CmaCh06G003760	Bhi11G001784	Wax gourd	cmawgoB0982
CmaCh06G003760	Bhi10G000447	Wax gourd	cmawgoB1033
CmaCh06G003760	CsGy3G030890	Cucumber (Gy14) v2	cgybcmaB428
CmaCh06G003760	CsGy6G023780	Cucumber (Gy14) v2	cgybcmaB854
CmaCh06G003760	Carg00983	Silver-seed gourd	carcmaB0216
CmaCh06G003760	Carg15271	Silver-seed gourd	carcmaB0764
CmaCh06G003760	Carg03769	Silver-seed gourd	carcmaB0350

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh06G003760	CmaCh14G002090	Cucurbita maxima (Rimu)	cmacmaB278
CmaCh06G003760	CmaCh07G009250	Cucurbita maxima (Rimu)	cmacmaB553

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh06G003760	Cucurbita maxima (Rimu)	cmacmaB490
CmaCh06G003760	Cucurbita maxima (Rimu)	cmacmaB501
CmaCh06G003760	Cucurbita maxima (Rimu)	cmacmaB522
CmaCh06G003760	Cucurbita moschata (Rifu)	cmacmoB818
CmaCh06G003760	Cucurbita moschata (Rifu)	cmacmoB822
CmaCh06G003760	Wild cucumber (PI 183967)	cmacpiB857
CmaCh06G003760	Cucurbita pepo (Zucchini)	cmacpeB821
CmaCh06G003760	Cucurbita pepo (Zucchini)	cmacpeB852
CmaCh06G003760	Cucumber (Gy14) v2	cgybcmaB852
CmaCh06G003760	Melon (DHL92) v3.6.1	cmamedB847
CmaCh06G003760	Cucumber (Chinese Long) v3	cmacucB0995
CmaCh06G003760	Wax gourd	cmawgoB0986
CmaCh06G003760	Wax gourd	cmawgoB1030