Cp4.1LG03g01880 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG03g01880
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	60S ribosomal protein L12
Location	Cp4.1LG03 : 888238 .. 888738 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGCCGAAGTTCGACCCAAGTCAGGTGGTTGATGTGTTTGTTCGTGTGACTGGAGGTGAGGTCGGAGCTGCTAGTTCTCTCGCTCCGAAGATCGGTCCTCTTGGTCTTTCCCCTAAGAAGATCGGAGAAGACATTGCTAAAGAGACCGCAAAGGAATGGAAAGGTCTTAGGGTTACTGTAAAGCTCACCGTCCAAAATCGTCAGGCGAAGGTCTCCGTTGTGCCTTCTGCGGCGGCTTTGGTAATTAAGGCCTTGAAGGAGCCGGAACGTGACAGGAAGAAGACTAAGAACATCAAGCATAATGGAAACATTTCTCTTGATGATGTGATTGAGATTGCTAGGGTTATGCGGCCCAGATCGATGGCTAAGGACCTCTCGGGTAGCGTCAAGGAGATCCTTGGTACTTGCGTGTCTGTTGTTTGTACTGTTGATGGCAAGGATCCTAAGGATCTTCAACAGGAAATTTCTGACGGCGACGTTGAAATCCCCCAAGATTGA

mRNA sequence

ATGCCGCCGAAGTTCGACCCAAGTCAGGTGGTTGATGTGTTTGTTCGTGTGACTGGAGGTGAGGTCGGAGCTGCTAGTTCTCTCGCTCCGAAGATCGGTCCTCTTGGTCTTTCCCCTAAGAAGATCGGAGAAGACATTGCTAAAGAGACCGCAAAGGAATGGAAAGGTCTTAGGGTTACTGTAAAGCTCACCGTCCAAAATCGTCAGGCGAAGGTCTCCGTTGTGCCTTCTGCGGCGGCTTTGGTAATTAAGGCCTTGAAGGAGCCGGAACGTGACAGGAAGAAGACTAAGAACATCAAGCATAATGGAAACATTTCTCTTGATGATGTGATTGAGATTGCTAGGGTTATGCGGCCCAGATCGATGGCTAAGGACCTCTCGGGTAGCGTCAAGGAGATCCTTGGTACTTGCGTGTCTGTTGTTTGTACTGTTGATGGCAAGGATCCTAAGGATCTTCAACAGGAAATTTCTGACGGCGACGTTGAAATCCCCCAAGATTGA

Coding sequence (CDS)

ATGCCGCCGAAGTTCGACCCAAGTCAGGTGGTTGATGTGTTTGTTCGTGTGACTGGAGGTGAGGTCGGAGCTGCTAGTTCTCTCGCTCCGAAGATCGGTCCTCTTGGTCTTTCCCCTAAGAAGATCGGAGAAGACATTGCTAAAGAGACCGCAAAGGAATGGAAAGGTCTTAGGGTTACTGTAAAGCTCACCGTCCAAAATCGTCAGGCGAAGGTCTCCGTTGTGCCTTCTGCGGCGGCTTTGGTAATTAAGGCCTTGAAGGAGCCGGAACGTGACAGGAAGAAGACTAAGAACATCAAGCATAATGGAAACATTTCTCTTGATGATGTGATTGAGATTGCTAGGGTTATGCGGCCCAGATCGATGGCTAAGGACCTCTCGGGTAGCGTCAAGGAGATCCTTGGTACTTGCGTGTCTGTTGTTTGTACTGTTGATGGCAAGGATCCTAAGGATCTTCAACAGGAAATTTCTGACGGCGACGTTGAAATCCCCCAAGATTGA

Protein sequence

MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPRSMAKDLSGSVKEILGTCVSVVCTVDGKDPKDLQQEISDGDVEIPQD

Homology

[Close]

BLAST of Cp4.1LG03g01880 vs. Swiss-Prot
Match: RL121_ARATH (60S ribosomal protein L12-1 OS=Arabidopsis thaliana GN=RPL12A PE=2 SV=2)

HSP 1 Score: 293.9 bits (751), Expect = 1.1e-78
Identity = 147/166 (88.55%), Postives = 160/166 (96.39%), Query Frame = 1


Query: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPK DPSQ+VDV+VRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKK KNIKHNGNIS DDV EIAR+MRPR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVVCTVDGKDPKDLQQEISDGDVEIPQD 167
           S+AK+LSG+V+EILGTCVSV CTVDGKDPKD+QQEI DG+VEIP++
Sbjct: 121 SIAKELSGTVREILGTCVSVGCTVDGKDPKDIQQEIQDGEVEIPEN 166

[Close]

BLAST of Cp4.1LG03g01880 vs. Swiss-Prot
Match: RL123_ARATH (60S ribosomal protein L12-3 OS=Arabidopsis thaliana GN=RPL12C PE=2 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 1.9e-78
Identity = 146/166 (87.95%), Postives = 160/166 (96.39%), Query Frame = 1


Query: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPK DPSQ+VDV+VRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKK KNIKHNGNIS DDVIEIA++MRPR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVIEIAKIMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVVCTVDGKDPKDLQQEISDGDVEIPQD 167
           S+AK+LSG+VKEILGTCVSV CTVDGKDPKDLQ+EI+ GD++IP +
Sbjct: 121 SIAKELSGTVKEILGTCVSVGCTVDGKDPKDLQEEINSGDIDIPNE 166

[Close]

BLAST of Cp4.1LG03g01880 vs. Swiss-Prot
Match: RL12_PRUAR (60S ribosomal protein L12 OS=Prunus armeniaca GN=RPL12 PE=2 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 1.9e-78
Identity = 150/166 (90.36%), Postives = 161/166 (96.99%), Query Frame = 1


Query: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKFDPSQVVDV+VRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETA +WKGLRVT
Sbjct: 1   MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETANDWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKH+G+ISLDDVIEIA++M+ R
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHSGHISLDDVIEIAKIMKHR 120

Query: 121 SMAKDLSGSVKEILGTCVSVVCTVDGKDPKDLQQEISDGDVEIPQD 167
           SMAK+L+G+VKEIL TCVSV CTVDGKDPKDLQQEI+DGDVEIP D
Sbjct: 121 SMAKELAGTVKEILRTCVSVGCTVDGKDPKDLQQEIADGDVEIPLD 166

[Close]

BLAST of Cp4.1LG03g01880 vs. Swiss-Prot
Match: RL122_ARATH (60S ribosomal protein L12-2 OS=Arabidopsis thaliana GN=RPL12B PE=1 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 2.5e-78
Identity = 146/166 (87.95%), Postives = 160/166 (96.39%), Query Frame = 1


Query: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPK DPSQ+VDV+VRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKK KNIKHNGNIS DDV EIAR+MRPR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVVCTVDGKDPKDLQQEISDGDVEIPQD 167
           S+AK+LSG+V+EILGTCVSV CTVDGKDPKDLQQEI +G++EIP++
Sbjct: 121 SIAKELSGTVREILGTCVSVGCTVDGKDPKDLQQEIQEGEIEIPEN 166

[Close]

BLAST of Cp4.1LG03g01880 vs. Swiss-Prot
Match: RL12A_SCHPO (60S ribosomal protein L12-A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl1201 PE=3 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 1.7e-63
Identity = 120/166 (72.29%), Postives = 146/166 (87.95%), Query Frame = 1


Query: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKFDP++V  +F+R  GGEV   S+LAPKIGPLGLSPKK+GEDIAK T K+WKGLRVT
Sbjct: 1   MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKAT-KDWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLT+QNRQA VSVVPSA+ALVIKALKEP RDRKK KN+ H+GN+SLD++IE+AR MR +
Sbjct: 61  VKLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVARTMRFK 120

Query: 121 SMAKDLSGSVKEILGTCVSVVCTVDGKDPKDLQQEISDGDVEIPQD 167
           S+AK+LSG+VKEILGT  SV CTVDGK+P D+Q+EI +G++EIPQ+
Sbjct: 121 SLAKELSGTVKEILGTAFSVGCTVDGKNPHDVQKEIDNGEIEIPQE 165

[Close]

BLAST of Cp4.1LG03g01880 vs. TrEMBL
Match: A0A0A0LAX8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G739040 PE=3 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 8.8e-83
Identity = 163/166 (98.19%), Postives = 164/166 (98.80%), Query Frame = 1


Query: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPK DPSQVV+VFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVVCTVDGKDPKDLQQEISDGDVEIPQD 167
           SMAKDLSGSVKEILGTCVSV CTVDGKDPKDLQQEISDGDVEIPQD
Sbjct: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEIPQD 166

[Close]

BLAST of Cp4.1LG03g01880 vs. TrEMBL
Match: A0A0A0KF33_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G445170 PE=3 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 2.0e-82
Identity = 162/166 (97.59%), Postives = 164/166 (98.80%), Query Frame = 1


Query: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPK DPSQVV+VFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVVCTVDGKDPKDLQQEISDGDVEIPQD 167
           SMAKDLSGSVKEILGTCVSV CTVDGKDPKDLQQEI+DGDVEIPQD
Sbjct: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 166

[Close]

BLAST of Cp4.1LG03g01880 vs. TrEMBL
Match: A5C1K6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0040g01870 PE=3 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 2.0e-82
Identity = 160/166 (96.39%), Postives = 165/166 (99.40%), Query Frame = 1


Query: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKFDPSQVVDV+VRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAK+WKGLRVT
Sbjct: 1   MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIA++MRPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIAKIMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVVCTVDGKDPKDLQQEISDGDVEIPQD 167
           SMAKDLSGSVKEILGTCVSV CTVDGKDPKDLQQEI+DGDVEIPQD
Sbjct: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEIADGDVEIPQD 166

[Close]

BLAST of Cp4.1LG03g01880 vs. TrEMBL
Match: A0A0R0HHB6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_11G146300 PE=3 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 4.4e-82
Identity = 159/166 (95.78%), Postives = 164/166 (98.80%), Query Frame = 1


Query: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKFDPSQ+VDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAK+WKGLRVT
Sbjct: 1   MPPKFDPSQIVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVVCTVDGKDPKDLQQEISDGDVEIPQD 167
           SMAKDLSGS+KEILGTCVSV CTVDGKDPKDLQQEISDGDVE+P D
Sbjct: 121 SMAKDLSGSIKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEVPLD 166

[Close]

BLAST of Cp4.1LG03g01880 vs. TrEMBL
Match: K7LQG0_SOYBN (Uncharacterized protein OS=Glycine max PE=3 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 4.4e-82
Identity = 159/166 (95.78%), Postives = 164/166 (98.80%), Query Frame = 1


Query: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKFDPSQ+VDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAK+WKGLRVT
Sbjct: 27  MPPKFDPSQIVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 86

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR
Sbjct: 87  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 146

Query: 121 SMAKDLSGSVKEILGTCVSVVCTVDGKDPKDLQQEISDGDVEIPQD 167
           SMAKDLSGS+KEILGTCVSV CTVDGKDPKDLQQEISDGDVE+P D
Sbjct: 147 SMAKDLSGSIKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEVPLD 192

[Close]

BLAST of Cp4.1LG03g01880 vs. TAIR10
Match: AT2G37190.1 (AT2G37190.1 Ribosomal protein L11 family protein)

HSP 1 Score: 293.9 bits (751), Expect = 6.2e-80
Identity = 147/166 (88.55%), Postives = 160/166 (96.39%), Query Frame = 1


Query: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPK DPSQ+VDV+VRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKK KNIKHNGNIS DDV EIAR+MRPR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVVCTVDGKDPKDLQQEISDGDVEIPQD 167
           S+AK+LSG+V+EILGTCVSV CTVDGKDPKD+QQEI DG+VEIP++
Sbjct: 121 SIAKELSGTVREILGTCVSVGCTVDGKDPKDIQQEIQDGEVEIPEN 166

[Close]

BLAST of Cp4.1LG03g01880 vs. TAIR10
Match: AT5G60670.1 (AT5G60670.1 Ribosomal protein L11 family protein)

HSP 1 Score: 293.1 bits (749), Expect = 1.1e-79
Identity = 146/166 (87.95%), Postives = 160/166 (96.39%), Query Frame = 1


Query: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPK DPSQ+VDV+VRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKK KNIKHNGNIS DDVIEIA++MRPR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVIEIAKIMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVVCTVDGKDPKDLQQEISDGDVEIPQD 167
           S+AK+LSG+VKEILGTCVSV CTVDGKDPKDLQ+EI+ GD++IP +
Sbjct: 121 SIAKELSGTVKEILGTCVSVGCTVDGKDPKDLQEEINSGDIDIPNE 166

[Close]

BLAST of Cp4.1LG03g01880 vs. TAIR10
Match: AT3G53430.1 (AT3G53430.1 Ribosomal protein L11 family protein)

HSP 1 Score: 292.7 bits (748), Expect = 1.4e-79
Identity = 146/166 (87.95%), Postives = 160/166 (96.39%), Query Frame = 1


Query: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPK DPSQ+VDV+VRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKK KNIKHNGNIS DDV EIAR+MRPR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVVCTVDGKDPKDLQQEISDGDVEIPQD 167
           S+AK+LSG+V+EILGTCVSV CTVDGKDPKDLQQEI +G++EIP++
Sbjct: 121 SIAKELSGTVREILGTCVSVGCTVDGKDPKDLQQEIQEGEIEIPEN 166

[Close]

BLAST of Cp4.1LG03g01880 vs. NCBI nr
Match: gi|449440099|ref|XP_004137822.1| (PREDICTED: 60S ribosomal protein L12-1 [Cucumis sativus])

HSP 1 Score: 314.3 bits (804), Expect = 1.3e-82
Identity = 163/166 (98.19%), Postives = 164/166 (98.80%), Query Frame = 1


Query: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPK DPSQVV+VFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVVCTVDGKDPKDLQQEISDGDVEIPQD 167
           SMAKDLSGSVKEILGTCVSV CTVDGKDPKDLQQEISDGDVEIPQD
Sbjct: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEIPQD 166

[Close]

BLAST of Cp4.1LG03g01880 vs. NCBI nr
Match: gi|225439982|ref|XP_002281255.1| (PREDICTED: 60S ribosomal protein L12 [Vitis vinifera])

HSP 1 Score: 313.2 bits (801), Expect = 2.8e-82
Identity = 160/166 (96.39%), Postives = 165/166 (99.40%), Query Frame = 1


Query: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKFDPSQVVDV+VRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAK+WKGLRVT
Sbjct: 1   MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIA++MRPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIAKIMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVVCTVDGKDPKDLQQEISDGDVEIPQD 167
           SMAKDLSGSVKEILGTCVSV CTVDGKDPKDLQQEI+DGDVEIPQD
Sbjct: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEIADGDVEIPQD 166

[Close]

BLAST of Cp4.1LG03g01880 vs. NCBI nr
Match: gi|449450998|ref|XP_004143249.1| (PREDICTED: 60S ribosomal protein L12-1-like [Cucumis sativus])

HSP 1 Score: 313.2 bits (801), Expect = 2.8e-82
Identity = 162/166 (97.59%), Postives = 164/166 (98.80%), Query Frame = 1


Query: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPK DPSQVV+VFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVVCTVDGKDPKDLQQEISDGDVEIPQD 167
           SMAKDLSGSVKEILGTCVSV CTVDGKDPKDLQQEI+DGDVEIPQD
Sbjct: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 166

[Close]

BLAST of Cp4.1LG03g01880 vs. NCBI nr
Match: gi|947081128|gb|KRH29917.1| (hypothetical protein GLYMA_11G146300 [Glycine max])

HSP 1 Score: 312.0 bits (798), Expect = 6.3e-82
Identity = 159/166 (95.78%), Postives = 164/166 (98.80%), Query Frame = 1


Query: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKFDPSQ+VDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAK+WKGLRVT
Sbjct: 1   MPPKFDPSQIVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVVCTVDGKDPKDLQQEISDGDVEIPQD 167
           SMAKDLSGS+KEILGTCVSV CTVDGKDPKDLQQEISDGDVE+P D
Sbjct: 121 SMAKDLSGSIKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEVPLD 166

[Close]

BLAST of Cp4.1LG03g01880 vs. NCBI nr
Match: gi|920708682|gb|KOM50679.1| (hypothetical protein LR48_Vigan08g150600 [Vigna angularis])

HSP 1 Score: 311.2 bits (796), Expect = 1.1e-81
Identity = 159/166 (95.78%), Postives = 164/166 (98.80%), Query Frame = 1


Query: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAK+WKGLRVT
Sbjct: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVVCTVDGKDPKDLQQEISDGDVEIPQD 167
           SMAKDLSGS+KEILGTCVSV CTVDGKDPKDLQQEI+DGDVE+P D
Sbjct: 121 SMAKDLSGSIKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEVPLD 166

The following BLAST results are available for this feature:

BLAST of Cp4.1LG03g01880 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL121_ARATH	1.1e-78	88.55	60S ribosomal protein L12-1 OS=Arabidopsis thaliana GN=RPL12A PE=2 SV=2	[more]
RL123_ARATH	1.9e-78	87.95	60S ribosomal protein L12-3 OS=Arabidopsis thaliana GN=RPL12C PE=2 SV=1	[more]
RL12_PRUAR	1.9e-78	90.36	60S ribosomal protein L12 OS=Prunus armeniaca GN=RPL12 PE=2 SV=1	[more]
RL122_ARATH	2.5e-78	87.95	60S ribosomal protein L12-2 OS=Arabidopsis thaliana GN=RPL12B PE=1 SV=1	[more]
RL12A_SCHPO	1.7e-63	72.29	60S ribosomal protein L12-A OS=Schizosaccharomyces pombe (strain 972 / ATCC 2484...	[more]

BLAST of Cp4.1LG03g01880 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAX8_CUCSA	8.8e-83	98.19	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G739040 PE=3 SV=1	[more]
A0A0A0KF33_CUCSA	2.0e-82	97.59	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G445170 PE=3 SV=1	[more]
A5C1K6_VITVI	2.0e-82	96.39	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0040g01870 PE=3 SV=...	[more]
A0A0R0HHB6_SOYBN	4.4e-82	95.78	Uncharacterized protein OS=Glycine max GN=GLYMA_11G146300 PE=3 SV=1	[more]
K7LQG0_SOYBN	4.4e-82	95.78	Uncharacterized protein OS=Glycine max PE=3 SV=1	[more]

BLAST of Cp4.1LG03g01880 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G37190.1	6.2e-80	88.55	Ribosomal protein L11 family protein	[more]
AT5G60670.1	1.1e-79	87.95	Ribosomal protein L11 family protein	[more]
AT3G53430.1	1.4e-79	87.95	Ribosomal protein L11 family protein	[more]

BLAST of Cp4.1LG03g01880 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449440099\|ref\|XP_004137822.1\|	1.3e-82	98.19	PREDICTED: 60S ribosomal protein L12-1 [Cucumis sativus]	[more]
gi\|225439982\|ref\|XP_002281255.1\|	2.8e-82	96.39	PREDICTED: 60S ribosomal protein L12 [Vitis vinifera]	[more]
gi\|449450998\|ref\|XP_004143249.1\|	2.8e-82	97.59	PREDICTED: 60S ribosomal protein L12-1-like [Cucumis sativus]	[more]
gi\|947081128\|gb\|KRH29917.1\|	6.3e-82	95.78	hypothetical protein GLYMA_11G146300 [Glycine max]	[more]
gi\|920708682\|gb\|KOM50679.1\|	1.1e-81	95.78	hypothetical protein LR48_Vigan08g150600 [Vigna angularis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR020784	Ribosomal_L11_N
IPR020783	Ribosomal_L11_C
IPR000911	Ribosomal_L11/L12

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0000027	ribosomal large subunit assembly
cellular_component	GO:0005840	ribosome
cellular_component	GO:0022625	cytosolic large ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0019843	rRNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG03g01880.1	Cp4.1LG03g01880.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000911	Ribosomal protein L11/L12	HAMAP	MF_00736	Ribosomal_L11	coord: 9..146 score: 1
IPR000911	Ribosomal protein L11/L12	PANTHER	PTHR11661	60S RIBOSOMAL PROTEIN L12	coord: 1..166 score: 7.6E
IPR000911	Ribosomal protein L11/L12	SMART	SM00649	rl11c	coord: 13..145 score: 4.8
IPR020783	Ribosomal protein L11, C-terminal	GENE3D	G3DSA:1.10.10.250		coord: 82..145 score: 2.8
IPR020783	Ribosomal protein L11, C-terminal	PFAM	PF00298	Ribosomal_L11	coord: 75..144 score: 2.3
IPR020783	Ribosomal protein L11, C-terminal	unknown	SSF46906	Ribosomal protein L11, C-terminal domain	coord: 76..149 score: 5.1
IPR020784	Ribosomal protein L11, N-terminal	GENE3D	G3DSA:3.30.1550.10		coord: 1..81 score: 9.4
IPR020784	Ribosomal protein L11, N-terminal	PFAM	PF03946	Ribosomal_L11_N	coord: 15..70 score: 7.5
IPR020784	Ribosomal protein L11, N-terminal	unknown	SSF54747	Ribosomal L11/L12e N-terminal domain	coord: 1..87 score: 3.92
None	No IPR available	PANTHER	PTHR11661:SF6	SUBFAMILY NOT NAMED	coord: 1..166 score: 7.6E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG03g01880	Cucsa.124370	Cucumber (Gy14) v1	cgycpeB0318
Cp4.1LG03g01880	Cucsa.306920	Cucumber (Gy14) v1	cgycpeB0801
Cp4.1LG03g01880	CmaCh06G003760	Cucurbita maxima (Rimu)	cmacpeB830
Cp4.1LG03g01880	CmaCh07G009250	Cucurbita maxima (Rimu)	cmacpeB883
Cp4.1LG03g01880	CmaCh14G002090	Cucurbita maxima (Rimu)	cmacpeB283
Cp4.1LG03g01880	CmoCh03G012370	Cucurbita moschata (Rifu)	cmocpeB635
Cp4.1LG03g01880	CmoCh07G009700	Cucurbita moschata (Rifu)	cmocpeB821
Cp4.1LG03g01880	CmoCh14G002010	Cucurbita moschata (Rifu)	cmocpeB245
Cp4.1LG03g01880	CmoCh06G003720	Cucurbita moschata (Rifu)	cmocpeB783
Cp4.1LG03g01880	Cla008741	Watermelon (97103) v1	cpewmB620
Cp4.1LG03g01880	Cla017820	Watermelon (97103) v1	cpewmB597
Cp4.1LG03g01880	Cla018289	Watermelon (97103) v1	cpewmB618
Cp4.1LG03g01880	Csa3G739040	Cucumber (Chinese Long) v2	cpecuB598
Cp4.1LG03g01880	Csa6G445170	Cucumber (Chinese Long) v2	cpecuB624
Cp4.1LG03g01880	MELO3C009338	Melon (DHL92) v3.5.1	cpemeB571
Cp4.1LG03g01880	ClCG10G020320	Watermelon (Charleston Gray)	cpewcgB546
Cp4.1LG03g01880	ClCG02G021160	Watermelon (Charleston Gray)	cpewcgB551
Cp4.1LG03g01880	ClCG04G009040	Watermelon (Charleston Gray)	cpewcgB553
Cp4.1LG03g01880	CSPI03G33200	Wild cucumber (PI 183967)	cpecpiB600
Cp4.1LG03g01880	Lsi10G012670	Bottle gourd (USVL1VR-Ls)	cpelsiB487
Cp4.1LG03g01880	Lsi03G020280	Bottle gourd (USVL1VR-Ls)	cpelsiB503
Cp4.1LG03g01880	Lsi01G013440	Bottle gourd (USVL1VR-Ls)	cpelsiB491
Cp4.1LG03g01880	MELO3C009338.2	Melon (DHL92) v3.6.1	cpemedB678
Cp4.1LG03g01880	CsaV3_6G039570	Cucumber (Chinese Long) v3	cpecucB0778
Cp4.1LG03g01880	CsaV3_3G035780	Cucumber (Chinese Long) v3	cpecucB0747
Cp4.1LG03g01880	Bhi03G001316	Wax gourd	cpewgoB0810
Cp4.1LG03g01880	Bhi11G001784	Wax gourd	cpewgoB0750
Cp4.1LG03g01880	CsGy6G023780	Cucumber (Gy14) v2	cgybcpeB826
Cp4.1LG03g01880	CsGy3G030890	Cucumber (Gy14) v2	cgybcpeB395
Cp4.1LG03g01880	Carg15271	Silver-seed gourd	carcpeB0777
Cp4.1LG03g01880	Carg00983	Silver-seed gourd	carcpeB0230
Cp4.1LG03g01880	Carg03769	Silver-seed gourd	carcpeB0353

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG03g01880	Cp4.1LG10g04680	Cucurbita pepo (Zucchini)	cpecpeB092
Cp4.1LG03g01880	Cp4.1LG19g04010	Cucurbita pepo (Zucchini)	cpecpeB416

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG03g01880	Wax gourd	cpewgoB0749
Cp4.1LG03g01880	Cucurbita pepo (Zucchini)	cpecpeB303
Cp4.1LG03g01880	Cucurbita pepo (Zucchini)	cpecpeB487
Cp4.1LG03g01880	Cucurbita maxima (Rimu)	cmacpeB681
Cp4.1LG03g01880	Cucurbita moschata (Rifu)	cmocpeB588
Cp4.1LG03g01880	Wild cucumber (PI 183967)	cpecpiB627
Cp4.1LG03g01880	Melon (DHL92) v3.5.1	cpemeB553
Cp4.1LG03g01880	Melon (DHL92) v3.6.1	cpemedB656