CsGy3G030890 (gene) Cucumber (Gy14) v2

Overview
NameCsGy3G030890
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
Description50S ribosomal protein L11
LocationChr3 : 30747397 .. 30747897 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTCCGAAGTTGGACCCTAGTCAGGTCGTTGAAGTCTTCGTTCGCGTCACCGGAGGTGAGGTCGGAGCCGCTAGTTCTCTCGCTCCCAAGATCGGTCCTCTCGGTCTTTCCCCTAAGAAGATTGGAGAAGACATTGCTAAAGAGACCGCCAAGGAATGGAAAGGTCTTAGGGTTACTGTAAAGCTCACCGTCCAAAATCGTCAGGCGAAGGTCTCCGTTGTTCCTTCTGCGGCGGCTTTGGTAATTAAGGCTTTGAAGGAGCCGGAACGTGACAGGAAGAAAACTAAGAACATCAAGCATAATGGGAATATTTCTCTTGATGATGTGATTGAGATTGCTAGGGTTATGCGGCCCAGGTCGATGGCTAAGGATCTCTCTGGCTCCGTCAAGGAGATTCTTGGTACTTGTGTGTCTGTTGGCTGTACTGTCGATGGCAAGGACCCGAAGGATCTTCAACAGGAGATTTCTGATGGCGATGTTGAAATCCCCCAAGATTGA

mRNA sequence

ATGCCTCCGAAGTTGGACCCTAGTCAGGTCGTTGAAGTCTTCGTTCGCGTCACCGGAGGTGAGGTCGGAGCCGCTAGTTCTCTCGCTCCCAAGATCGGTCCTCTCGGTCTTTCCCCTAAGAAGATTGGAGAAGACATTGCTAAAGAGACCGCCAAGGAATGGAAAGGTCTTAGGGTTACTGTAAAGCTCACCGTCCAAAATCGTCAGGCGAAGGTCTCCGTTGTTCCTTCTGCGGCGGCTTTGGTAATTAAGGCTTTGAAGGAGCCGGAACGTGACAGGAAGAAAACTAAGAACATCAAGCATAATGGGAATATTTCTCTTGATGATGTGATTGAGATTGCTAGGGTTATGCGGCCCAGGTCGATGGCTAAGGATCTCTCTGGCTCCGTCAAGGAGATTCTTGGTACTTGTGTGTCTGTTGGCTGTACTGTCGATGGCAAGGACCCGAAGGATCTTCAACAGGAGATTTCTGATGGCGATGTTGAAATCCCCCAAGATTGA

Coding sequence (CDS)

ATGCCTCCGAAGTTGGACCCTAGTCAGGTCGTTGAAGTCTTCGTTCGCGTCACCGGAGGTGAGGTCGGAGCCGCTAGTTCTCTCGCTCCCAAGATCGGTCCTCTCGGTCTTTCCCCTAAGAAGATTGGAGAAGACATTGCTAAAGAGACCGCCAAGGAATGGAAAGGTCTTAGGGTTACTGTAAAGCTCACCGTCCAAAATCGTCAGGCGAAGGTCTCCGTTGTTCCTTCTGCGGCGGCTTTGGTAATTAAGGCTTTGAAGGAGCCGGAACGTGACAGGAAGAAAACTAAGAACATCAAGCATAATGGGAATATTTCTCTTGATGATGTGATTGAGATTGCTAGGGTTATGCGGCCCAGGTCGATGGCTAAGGATCTCTCTGGCTCCGTCAAGGAGATTCTTGGTACTTGTGTGTCTGTTGGCTGTACTGTCGATGGCAAGGACCCGAAGGATCTTCAACAGGAGATTTCTGATGGCGATGTTGAAATCCCCCAAGATTGA

Protein sequence

MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPRSMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEIPQD
Homology
[Close]
BLAST of CsGy3G030890 vs. NCBI nr
Match: XP_004137822.1 (PREDICTED: 60S ribosomal protein L12-1 [Cucumis sativus] >KGN58958.1 hypothetical protein Csa_3G739040 [Cucumis sativus])

HSP 1 Score: 320.1 bits (819), Expect = 4.5e-84
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0 

Query: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEIPQD 167
           SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEIPQD
Sbjct: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEIPQD 166

[Close]
BLAST of CsGy3G030890 vs. NCBI nr
Match: XP_004143249.1 (PREDICTED: 60S ribosomal protein L12-1-like [Cucumis sativus] >XP_008442680.1 PREDICTED: 60S ribosomal protein L12-1 [Cucumis melo] >XP_008449248.1 PREDICTED: 60S ribosomal protein L12-1 [Cucumis melo] >KGN48153.1 hypothetical protein Csa_6G445170 [Cucumis sativus])

HSP 1 Score: 318.9 bits (816), Expect = 1.0e-83
Identity = 165/166 (99.40%), Postives = 166/166 (100.00%), Query Frame = 0 

Query: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEIPQD 167
           SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEI+DGDVEIPQD
Sbjct: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 166

[Close]
BLAST of CsGy3G030890 vs. NCBI nr
Match: XP_022935531.1 (60S ribosomal protein L12-1-like [Cucurbita moschata] >XP_022983536.1 60S ribosomal protein L12-1-like [Cucurbita maxima])

HSP 1 Score: 317.4 bits (812), Expect = 2.9e-83
Identity = 164/166 (98.80%), Postives = 165/166 (99.40%), Query Frame = 0 

Query: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPK DPSQVV+VFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEIPQD 167
           SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEIPQD
Sbjct: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEIPQD 166

[Close]
BLAST of CsGy3G030890 vs. NCBI nr
Match: XP_022950157.1 (60S ribosomal protein L12-3 [Cucurbita moschata] >XP_023005871.1 60S ribosomal protein L12-3 [Cucurbita maxima] >XP_023540179.1 60S ribosomal protein L12-3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 315.8 bits (808), Expect = 8.5e-83
Identity = 162/166 (97.59%), Postives = 165/166 (99.40%), Query Frame = 0 

Query: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPK DPSQVV+VFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEIPQD 167
           SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEI+DGDVE+PQD
Sbjct: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEINDGDVEVPQD 166

[Close]
BLAST of CsGy3G030890 vs. NCBI nr
Match: XP_023528339.1 (60S ribosomal protein L12-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 313.9 bits (803), Expect = 3.2e-82
Identity = 163/166 (98.19%), Postives = 164/166 (98.80%), Query Frame = 0 

Query: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPK DPSQVV+VFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEIPQD 167
           SMAKDLSGSVKEILGTCVSV CTVDGKDPKDLQQEISDGDVEIPQD
Sbjct: 121 SMAKDLSGSVKEILGTCVSVVCTVDGKDPKDLQQEISDGDVEIPQD 166

[Close]
BLAST of CsGy3G030890 vs. TAIR10
Match: AT2G37190.1 (Ribosomal protein L11 family protein)

HSP 1 Score: 297.0 bits (759), Expect = 7.4e-81
Identity = 148/166 (89.16%), Postives = 162/166 (97.59%), Query Frame = 0 

Query: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKLDPSQ+V+V+VRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKK KNIKHNGNIS DDV EIAR+MRPR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEIPQD 167
           S+AK+LSG+V+EILGTCVSVGCTVDGKDPKD+QQEI DG+VEIP++
Sbjct: 121 SIAKELSGTVREILGTCVSVGCTVDGKDPKDIQQEIQDGEVEIPEN 166

[Close]
BLAST of CsGy3G030890 vs. TAIR10
Match: AT5G60670.1 (Ribosomal protein L11 family protein)

HSP 1 Score: 296.2 bits (757), Expect = 1.3e-80
Identity = 147/166 (88.55%), Postives = 162/166 (97.59%), Query Frame = 0 

Query: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKLDPSQ+V+V+VRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKK KNIKHNGNIS DDVIEIA++MRPR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVIEIAKIMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEIPQD 167
           S+AK+LSG+VKEILGTCVSVGCTVDGKDPKDLQ+EI+ GD++IP +
Sbjct: 121 SIAKELSGTVKEILGTCVSVGCTVDGKDPKDLQEEINSGDIDIPNE 166

[Close]
BLAST of CsGy3G030890 vs. TAIR10
Match: AT3G53430.1 (Ribosomal protein L11 family protein)

HSP 1 Score: 295.8 bits (756), Expect = 1.6e-80
Identity = 147/166 (88.55%), Postives = 162/166 (97.59%), Query Frame = 0 

Query: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKLDPSQ+V+V+VRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKK KNIKHNGNIS DDV EIAR+MRPR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEIPQD 167
           S+AK+LSG+V+EILGTCVSVGCTVDGKDPKDLQQEI +G++EIP++
Sbjct: 121 SIAKELSGTVREILGTCVSVGCTVDGKDPKDLQQEIQEGEIEIPEN 166

[Close]
BLAST of CsGy3G030890 vs. Swiss-Prot
Match: sp|P50883|RL121_ARATH (60S ribosomal protein L12-1 OS=Arabidopsis thaliana OX=3702 GN=RPL12A PE=2 SV=2)

HSP 1 Score: 297.0 bits (759), Expect = 1.3e-79
Identity = 148/166 (89.16%), Postives = 162/166 (97.59%), Query Frame = 0 

Query: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKLDPSQ+V+V+VRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKK KNIKHNGNIS DDV EIAR+MRPR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEIPQD 167
           S+AK+LSG+V+EILGTCVSVGCTVDGKDPKD+QQEI DG+VEIP++
Sbjct: 121 SIAKELSGTVREILGTCVSVGCTVDGKDPKDIQQEIQDGEVEIPEN 166

[Close]
BLAST of CsGy3G030890 vs. Swiss-Prot
Match: sp|Q9FF52|RL123_ARATH (60S ribosomal protein L12-3 OS=Arabidopsis thaliana OX=3702 GN=RPL12C PE=2 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 2.3e-79
Identity = 147/166 (88.55%), Postives = 162/166 (97.59%), Query Frame = 0 

Query: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKLDPSQ+V+V+VRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKK KNIKHNGNIS DDVIEIA++MRPR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVIEIAKIMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEIPQD 167
           S+AK+LSG+VKEILGTCVSVGCTVDGKDPKDLQ+EI+ GD++IP +
Sbjct: 121 SIAKELSGTVKEILGTCVSVGCTVDGKDPKDLQEEINSGDIDIPNE 166

[Close]
BLAST of CsGy3G030890 vs. Swiss-Prot
Match: sp|Q9LFH5|RL122_ARATH (60S ribosomal protein L12-2 OS=Arabidopsis thaliana OX=3702 GN=RPL12B PE=1 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 3.0e-79
Identity = 147/166 (88.55%), Postives = 162/166 (97.59%), Query Frame = 0 

Query: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKLDPSQ+V+V+VRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKK KNIKHNGNIS DDV EIAR+MRPR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEIPQD 167
           S+AK+LSG+V+EILGTCVSVGCTVDGKDPKDLQQEI +G++EIP++
Sbjct: 121 SIAKELSGTVREILGTCVSVGCTVDGKDPKDLQQEIQEGEIEIPEN 166

[Close]
BLAST of CsGy3G030890 vs. Swiss-Prot
Match: sp|O50003|RL12_PRUAR (60S ribosomal protein L12 OS=Prunus armeniaca OX=36596 GN=RPL12 PE=2 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 3.3e-78
Identity = 149/166 (89.76%), Postives = 161/166 (96.99%), Query Frame = 0 

Query: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPK DPSQVV+V+VRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETA +WKGLRVT
Sbjct: 1   MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETANDWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKH+G+ISLDDVIEIA++M+ R
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHSGHISLDDVIEIAKIMKHR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEIPQD 167
           SMAK+L+G+VKEIL TCVSVGCTVDGKDPKDLQQEI+DGDVEIP D
Sbjct: 121 SMAKELAGTVKEILRTCVSVGCTVDGKDPKDLQQEIADGDVEIPLD 166

[Close]
BLAST of CsGy3G030890 vs. Swiss-Prot
Match: sp|P0CT83|RL12A_SCHPO (60S ribosomal protein L12-A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpl1201 PE=3 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 1.0e-63
Identity = 120/166 (72.29%), Postives = 146/166 (87.95%), Query Frame = 0 

Query: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPK DP++V  +F+R  GGEV   S+LAPKIGPLGLSPKK+GEDIAK T K+WKGLRVT
Sbjct: 1   MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKAT-KDWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLT+QNRQA VSVVPSA+ALVIKALKEP RDRKK KN+ H+GN+SLD++IE+AR MR +
Sbjct: 61  VKLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVARTMRFK 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEIPQD 167
           S+AK+LSG+VKEILGT  SVGCTVDGK+P D+Q+EI +G++EIPQ+
Sbjct: 121 SLAKELSGTVKEILGTAFSVGCTVDGKNPHDVQKEIDNGEIEIPQE 165

[Close]
BLAST of CsGy3G030890 vs. TrEMBL
Match: tr|A0A0A0LAX8|A0A0A0LAX8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G739040 PE=3 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 3.0e-84
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0 

Query: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEIPQD 167
           SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEIPQD
Sbjct: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEIPQD 166

[Close]
BLAST of CsGy3G030890 vs. TrEMBL
Match: tr|A0A1S3BLM0|A0A1S3BLM0_CUCME (60S ribosomal protein L12-1 OS=Cucumis melo OX=3656 GN=LOC103491184 PE=3 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 6.6e-84
Identity = 165/166 (99.40%), Postives = 166/166 (100.00%), Query Frame = 0 

Query: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEIPQD 167
           SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEI+DGDVEIPQD
Sbjct: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 166

[Close]
BLAST of CsGy3G030890 vs. TrEMBL
Match: tr|A0A0A0KF33|A0A0A0KF33_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G445170 PE=3 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 6.6e-84
Identity = 165/166 (99.40%), Postives = 166/166 (100.00%), Query Frame = 0 

Query: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEIPQD 167
           SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEI+DGDVEIPQD
Sbjct: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 166

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BLAST of CsGy3G030890 vs. TrEMBL
Match: tr|A5C1K6|A5C1K6_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_08s0040g01870 PE=3 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 6.2e-82
Identity = 159/166 (95.78%), Postives = 165/166 (99.40%), Query Frame = 0 

Query: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPK DPSQVV+V+VRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAK+WKGLRVT
Sbjct: 1   MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIA++MRPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIAKIMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEIPQD 167
           SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEI+DGDVEIPQD
Sbjct: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEIADGDVEIPQD 166

[Close]
BLAST of CsGy3G030890 vs. TrEMBL
Match: tr|A0A0R0HHB6|A0A0R0HHB6_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_11G146300 PE=3 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 1.4e-81
Identity = 158/166 (95.18%), Postives = 164/166 (98.80%), Query Frame = 0 

Query: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPK DPSQ+V+VFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAK+WKGLRVT
Sbjct: 1   MPPKFDPSQIVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEIPQD 167
           SMAKDLSGS+KEILGTCVSVGCTVDGKDPKDLQQEISDGDVE+P D
Sbjct: 121 SMAKDLSGSIKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEVPLD 166

The following BLAST results are available for this feature:
BLAST of CsGy3G030890 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004137822.14.5e-84100.00PREDICTED: 60S ribosomal protein L12-1 [Cucumis sativus] >KGN58958.1 hypothetica... [more]
XP_004143249.11.0e-8399.40PREDICTED: 60S ribosomal protein L12-1-like [Cucumis sativus] >XP_008442680.1 PR... [more]
XP_022935531.12.9e-8398.8060S ribosomal protein L12-1-like [Cucurbita moschata] >XP_022983536.1 60S riboso... [more]
XP_022950157.18.5e-8397.5960S ribosomal protein L12-3 [Cucurbita moschata] >XP_023005871.1 60S ribosomal p... [more]
XP_023528339.13.2e-8298.1960S ribosomal protein L12-1-like [Cucurbita pepo subsp. pepo][more]
BLAST of CsGy3G030890 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G37190.17.4e-8189.16Ribosomal protein L11 family protein[more]
AT5G60670.11.3e-8088.55Ribosomal protein L11 family protein[more]
AT3G53430.11.6e-8088.55Ribosomal protein L11 family protein[more]
BLAST of CsGy3G030890 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P50883|RL121_ARATH1.3e-7989.1660S ribosomal protein L12-1 OS=Arabidopsis thaliana OX=3702 GN=RPL12A PE=2 SV=2[more]
sp|Q9FF52|RL123_ARATH2.3e-7988.5560S ribosomal protein L12-3 OS=Arabidopsis thaliana OX=3702 GN=RPL12C PE=2 SV=1[more]
sp|Q9LFH5|RL122_ARATH3.0e-7988.5560S ribosomal protein L12-2 OS=Arabidopsis thaliana OX=3702 GN=RPL12B PE=1 SV=1[more]
sp|O50003|RL12_PRUAR3.3e-7889.7660S ribosomal protein L12 OS=Prunus armeniaca OX=36596 GN=RPL12 PE=2 SV=1[more]
sp|P0CT83|RL12A_SCHPO1.0e-6372.2960S ribosomal protein L12-A OS=Schizosaccharomyces pombe (strain 972 / ATCC 2484... [more]
BLAST of CsGy3G030890 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LAX8|A0A0A0LAX8_CUCSA3.0e-84100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G739040 PE=3 SV=1[more]
tr|A0A1S3BLM0|A0A1S3BLM0_CUCME6.6e-8499.4060S ribosomal protein L12-1 OS=Cucumis melo OX=3656 GN=LOC103491184 PE=3 SV=1[more]
tr|A0A0A0KF33|A0A0A0KF33_CUCSA6.6e-8499.40Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G445170 PE=3 SV=1[more]
tr|A5C1K6|A5C1K6_VITVI6.2e-8295.78Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_08s0040g01870 PE=3 SV=... [more]
tr|A0A0R0HHB6|A0A0R0HHB6_SOYBN1.4e-8195.18Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_11G146300 PE=3 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR020785Ribosomal_L11_CS
IPR020784Ribosomal_L11_N
IPR036796Ribosomal_L11/L12_N_sf
IPR020783Ribosomal_L11_C
IPR036769Ribosomal_L11_C_sf
IPR000911Ribosomal_L11/L12
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000027 ribosomal large subunit assembly
biological_process GO:0006412 translation
biological_process GO:0042254 ribosome biogenesis
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy3G030890.1CsGy3G030890.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000911Ribosomal protein L11/L12SMARTSM00649rl11ccoord: 13..145
e-value: 1.8E-56
score: 203.6
IPR000911Ribosomal protein L11/L12PANTHERPTHR1166160S RIBOSOMAL PROTEIN L12coord: 1..165
IPR000911Ribosomal protein L11/L12HAMAPMF_00736Ribosomal_L11coord: 9..146
score: 15.759
IPR000911Ribosomal protein L11/L12CDDcd00349Ribosomal_L11coord: 13..144
e-value: 1.46257E-50
score: 159.924
IPR036769Ribosomal protein L11, C-terminal domain superfamilyGENE3DG3DSA:1.10.10.250coord: 82..164
e-value: 3.7E-42
score: 144.6
IPR036769Ribosomal protein L11, C-terminal domain superfamilySUPERFAMILYSSF46906Ribosomal protein L11, C-terminal domaincoord: 76..149
IPR020783Ribosomal protein L11, C-terminalPFAMPF00298Ribosomal_L11coord: 75..144
e-value: 8.0E-19
score: 67.8
IPR036796Ribosomal protein L11/L12, N-terminal domain superfamilyGENE3DG3DSA:3.30.1550.10coord: 1..81
e-value: 6.9E-41
score: 140.3
IPR036796Ribosomal protein L11/L12, N-terminal domain superfamilySUPERFAMILYSSF54747Ribosomal L11/L12e N-terminal domaincoord: 1..87
IPR020784Ribosomal protein L11, N-terminalPFAMPF03946Ribosomal_L11_Ncoord: 15..70
e-value: 9.0E-23
score: 79.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 144..166
NoneNo IPR availablePANTHERPTHR11661:SF260S RIBOSOMAL PROTEIN L12coord: 1..165
IPR020785Ribosomal protein L11, conserved sitePROSITEPS00359RIBOSOMAL_L11coord: 131..146

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy3G030890Cla018289Watermelon (97103) v1cgybwmB250
CsGy3G030890Cla008741Watermelon (97103) v1cgybwmB251
CsGy3G030890Cla017820Watermelon (97103) v1cgybwmB187
CsGy3G030890Csa3G739040Cucumber (Chinese Long) v2cgybcuB111
CsGy3G030890Csa6G445170Cucumber (Chinese Long) v2cgybcuB137
CsGy3G030890MELO3C009338Melon (DHL92) v3.5.1cgybmeB184
CsGy3G030890ClCG04G009040Watermelon (Charleston Gray)cgybwcgB202
CsGy3G030890ClCG02G021160Watermelon (Charleston Gray)cgybwcgB195
CsGy3G030890ClCG10G020320Watermelon (Charleston Gray)cgybwcgB179
CsGy3G030890CSPI03G33200Wild cucumber (PI 183967)cgybcpiB110
CsGy3G030890CmaCh14G002090Cucurbita maxima (Rimu)cgybcmaB306
CsGy3G030890CmaCh06G003760Cucurbita maxima (Rimu)cgybcmaB428
CsGy3G030890CmaCh07G009250Cucurbita maxima (Rimu)cgybcmaB451
CsGy3G030890CmoCh03G012370Cucurbita moschata (Rifu)cgybcmoB382
CsGy3G030890CmoCh06G003720Cucurbita moschata (Rifu)cgybcmoB402
CsGy3G030890CmoCh07G009700Cucurbita moschata (Rifu)cgybcmoB418
CsGy3G030890CmoCh14G002010Cucurbita moschata (Rifu)cgybcmoB279
CsGy3G030890Lsi01G013440Bottle gourd (USVL1VR-Ls)cgyblsiB153
CsGy3G030890Lsi03G020280Bottle gourd (USVL1VR-Ls)cgyblsiB171
CsGy3G030890Lsi10G012670Bottle gourd (USVL1VR-Ls)cgyblsiB146
CsGy3G030890Cp4.1LG10g04680Cucurbita pepo (Zucchini)cgybcpeB291
CsGy3G030890Cp4.1LG19g04010Cucurbita pepo (Zucchini)cgybcpeB373
CsGy3G030890Cp4.1LG03g01880Cucurbita pepo (Zucchini)cgybcpeB395
CsGy3G030890MELO3C009338.2Melon (DHL92) v3.6.1cgybmedB185
CsGy3G030890CsaV3_6G039570Cucumber (Chinese Long) v3cgybcucB141
CsGy3G030890CsaV3_3G035780Cucumber (Chinese Long) v3cgybcucB117
CsGy3G030890Cla97C02G047200Watermelon (97103) v2cgybwmbB187
CsGy3G030890Cla97C10G203500Watermelon (97103) v2cgybwmbB178
CsGy3G030890Cla97C04G075730Watermelon (97103) v2cgybwmbB195
CsGy3G030890Bhi03G001316Wax gourdcgybwgoB316
CsGy3G030890Bhi11G001784Wax gourdcgybwgoB223
CsGy3G030890Bhi10G000447Wax gourdcgybwgoB312
CsGy3G030890Carg00983Silver-seed gourdcarcgybB0170
CsGy3G030890Carg15271Silver-seed gourdcarcgybB0553
CsGy3G030890Carg03769Silver-seed gourdcarcgybB0263
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CsGy3G030890CsGy6G023780Cucumber (Gy14) v2cgybcgybB100
The following block(s) are covering this gene:
GeneOrganismBlock
CsGy3G030890Cucumber (Chinese Long) v3cgybcucB143
CsGy3G030890Cucumber (Chinese Long) v3cgybcucB138
CsGy3G030890Wax gourdcgybwgoB225
CsGy3G030890Cucumber (Gy14) v2cgybcgybB097
CsGy3G030890Cucumber (Gy14) v2cgybcgybB102
CsGy3G030890Cucurbita maxima (Rimu)cgybcmaB388
CsGy3G030890Cucurbita maxima (Rimu)cgybcmaB393
CsGy3G030890Cucurbita maxima (Rimu)cgybcmaB407
CsGy3G030890Cucurbita moschata (Rifu)cgybcmoB347
CsGy3G030890Cucurbita moschata (Rifu)cgybcmoB360
CsGy3G030890Cucurbita moschata (Rifu)cgybcmoB364
CsGy3G030890Cucurbita pepo (Zucchini)cgybcpeB315
CsGy3G030890Cucurbita pepo (Zucchini)cgybcpeB347
CsGy3G030890Cucurbita pepo (Zucchini)cgybcpeB386
CsGy3G030890Cucurbita pepo (Zucchini)cgybcpeB455
CsGy3G030890Cucumber (Chinese Long) v2cgybcuB139
CsGy3G030890Melon (DHL92) v3.5.1cgybmeB150
CsGy3G030890Melon (DHL92) v3.6.1cgybmedB144
CsGy3G030890Melon (DHL92) v3.6.1cgybmedB149
CsGy3G030890Wild cucumber (PI 183967)cgybcpiB140
CsGy3G030890Wild cucumber (PI 183967)cgybcpiB142
CsGy3G030890Silver-seed gourdcarcgybB0344
CsGy3G030890Silver-seed gourdcarcgybB0451