CsaV3_3G035780 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G035780
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Description60s ribosomal protein l12
Locationchr3 : 29900834 .. 29901984 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAATATTTTATTGCGTTGATGGAATTTTTCATTACTACACTAACCACTAACGTAAATATTTTTGGATTTGATTACAATTATGTAAATTAACTTTGTTCTTATTTACTTTTTACAAAAGGTAAAAATATAATTTTAGTCACAAAAATGTTTTTAGAAATCTATTTAGGCCCATTTTGAATGGGCCGAGACATGGTGGGAAAAGTCCAAAAGAAACGGATTAGGGTTTTTAATTTCCAGTAGAGAATGGGCCGACGAGACATCGTCGGTTGTGGAAGCTCGAAGGCATGTGAAAAACCCTAGCATAAATCAACCGAAAGCCTCTTCATTTTCTCTTCGCCGCTCTCTTTTAGTTCATTAGTGGCTGTGGTTGTTCTTCCTTCTGTGGAATCTCTCGAATCCACTTCCCTTCCCGCCGCCCAATCATGCCTCCGAAGTTGGACCCTAGTCAGGTCGTTGAAGTCTTCGTTCGCGTCACCGGAGGTGAGGTCGGAGCCGCTAGTTCTCTCGCTCCCAAGATCGGTCCTCTCGGTCTTTCCCCTAAGAAGATTGGAGAAGACATTGCTAAAGAGACCGCCAAGGAATGGAAAGGTCTTAGGGTTACTGTAAAGCTCACCGTCCAAAATCGTCAGGCGAAGGTCTCCGTTGTTCCTTCTGCGGCGGCTTTGGTAATTAAGGCTTTGAAGGAGCCGGAACGTGACAGGAAGAAAACTAAGAACATCAAGCATAATGGGAATATTTCTCTTGATGATGTGATTGAGATTGCTAGGGTTATGCGGCCCAGGTCGATGGCTAAGGATCTCTCTGGCTCCGTCAAGGAGATTCTTGGTACTTGTGTGTCTGTTGGCTGTACTGTCGATGGCAAGGACCCGAAGGATCTTCAACAGGAGATTTCTGATGGCGATGTTGAAATCCCCCAAGATTGAGAGTAAAACTTTCTTTGGCCACTCCTTTAGAATGAGGGATATTGAATTTACTTCTACATCCTTGTTTTATCAGTTTTGCTATTTAACGTAAGTTTTAGGGTGGTTTTTCTCTATTTCTCTCTTGTTTATCTGCGTTTTTTGTCGTTTTTTTTTAAAAGAAGCCTGAATTGGATTATTGCAATGAATATCAAAGCTTTATTTCTTCTCTATCATTGGTTTAAGGAATG

mRNA sequence

ATGCCTCCGAAGTTGGACCCTAGTCAGGTCGTTGAAGTCTTCGTTCGCGTCACCGGAGGTGAGGTCGGAGCCGCTAGTTCTCTCGCTCCCAAGATCGGTCCTCTCGGTCTTTCCCCTAAGAAGATTGGAGAAGACATTGCTAAAGAGACCGCCAAGGAATGGAAAGGTCTTAGGGTTACTGTAAAGCTCACCGTCCAAAATCGTCAGGCGAAGGTCTCCGTTGTTCCTTCTGCGGCGGCTTTGGTAATTAAGGCTTTGAAGGAGCCGGAACGTGACAGGAAGAAAACTAAGAACATCAAGCATAATGGGAATATTTCTCTTGATGATGTGATTGAGATTGCTAGGGTTATGCGGCCCAGGTCGATGGCTAAGGATCTCTCTGGCTCCGTCAAGGAGATTCTTGGTACTTGTGTGTCTGTTGGCTGTACTGTCGATGGCAAGGACCCGAAGGATCTTCAACAGGAGATTTCTGATGGCGATGTTGAAATCCCCCAAGATTGA

Coding sequence (CDS)

ATGCCTCCGAAGTTGGACCCTAGTCAGGTCGTTGAAGTCTTCGTTCGCGTCACCGGAGGTGAGGTCGGAGCCGCTAGTTCTCTCGCTCCCAAGATCGGTCCTCTCGGTCTTTCCCCTAAGAAGATTGGAGAAGACATTGCTAAAGAGACCGCCAAGGAATGGAAAGGTCTTAGGGTTACTGTAAAGCTCACCGTCCAAAATCGTCAGGCGAAGGTCTCCGTTGTTCCTTCTGCGGCGGCTTTGGTAATTAAGGCTTTGAAGGAGCCGGAACGTGACAGGAAGAAAACTAAGAACATCAAGCATAATGGGAATATTTCTCTTGATGATGTGATTGAGATTGCTAGGGTTATGCGGCCCAGGTCGATGGCTAAGGATCTCTCTGGCTCCGTCAAGGAGATTCTTGGTACTTGTGTGTCTGTTGGCTGTACTGTCGATGGCAAGGACCCGAAGGATCTTCAACAGGAGATTTCTGATGGCGATGTTGAAATCCCCCAAGATTGA

Protein sequence

MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPRSMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEIPQD
Homology
[Close]
BLAST of CsaV3_3G035780 vs. NCBI nr
Match: XP_004137822.1 (PREDICTED: 60S ribosomal protein L12-1 [Cucumis sativus] >KGN58958.1 hypothetical protein Csa_3G739040 [Cucumis sativus])

HSP 1 Score: 321.2 bits (822), Expect = 2.0e-84
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0 

Query: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEIPQD 167
           SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEIPQD
Sbjct: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEIPQD 166

[Close]
BLAST of CsaV3_3G035780 vs. NCBI nr
Match: XP_004143249.1 (PREDICTED: 60S ribosomal protein L12-1-like [Cucumis sativus] >XP_008442680.1 PREDICTED: 60S ribosomal protein L12-1 [Cucumis melo] >XP_008449248.1 PREDICTED: 60S ribosomal protein L12-1 [Cucumis melo] >KGN48153.1 hypothetical protein Csa_6G445170 [Cucumis sativus])

HSP 1 Score: 320.1 bits (819), Expect = 4.5e-84
Identity = 165/166 (99.40%), Postives = 166/166 (100.00%), Query Frame = 0 

Query: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEIPQD 167
           SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEI+DGDVEIPQD
Sbjct: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 166

[Close]
BLAST of CsaV3_3G035780 vs. NCBI nr
Match: XP_022935531.1 (60S ribosomal protein L12-1-like [Cucurbita moschata] >XP_022983536.1 60S ribosomal protein L12-1-like [Cucurbita maxima])

HSP 1 Score: 318.5 bits (815), Expect = 1.3e-83
Identity = 164/166 (98.80%), Postives = 165/166 (99.40%), Query Frame = 0 

Query: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPK DPSQVV+VFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEIPQD 167
           SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEIPQD
Sbjct: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEIPQD 166

[Close]
BLAST of CsaV3_3G035780 vs. NCBI nr
Match: XP_022950157.1 (60S ribosomal protein L12-3 [Cucurbita moschata] >XP_023005871.1 60S ribosomal protein L12-3 [Cucurbita maxima] >XP_023540179.1 60S ribosomal protein L12-3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 317.0 bits (811), Expect = 3.8e-83
Identity = 162/166 (97.59%), Postives = 165/166 (99.40%), Query Frame = 0 

Query: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPK DPSQVV+VFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEIPQD 167
           SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEI+DGDVE+PQD
Sbjct: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEINDGDVEVPQD 166

[Close]
BLAST of CsaV3_3G035780 vs. NCBI nr
Match: XP_023528339.1 (60S ribosomal protein L12-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 315.1 bits (806), Expect = 1.5e-82
Identity = 163/166 (98.19%), Postives = 164/166 (98.80%), Query Frame = 0 

Query: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPK DPSQVV+VFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEIPQD 167
           SMAKDLSGSVKEILGTCVSV CTVDGKDPKDLQQEISDGDVEIPQD
Sbjct: 121 SMAKDLSGSVKEILGTCVSVVCTVDGKDPKDLQQEISDGDVEIPQD 166

[Close]
BLAST of CsaV3_3G035780 vs. TAIR10
Match: AT2G37190.1 (Ribosomal protein L11 family protein)

HSP 1 Score: 298.1 bits (762), Expect = 3.3e-81
Identity = 148/166 (89.16%), Postives = 162/166 (97.59%), Query Frame = 0 

Query: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKLDPSQ+V+V+VRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKK KNIKHNGNIS DDV EIAR+MRPR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEIPQD 167
           S+AK+LSG+V+EILGTCVSVGCTVDGKDPKD+QQEI DG+VEIP++
Sbjct: 121 SIAKELSGTVREILGTCVSVGCTVDGKDPKDIQQEIQDGEVEIPEN 166

[Close]
BLAST of CsaV3_3G035780 vs. TAIR10
Match: AT5G60670.1 (Ribosomal protein L11 family protein)

HSP 1 Score: 297.4 bits (760), Expect = 5.7e-81
Identity = 147/166 (88.55%), Postives = 162/166 (97.59%), Query Frame = 0 

Query: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKLDPSQ+V+V+VRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKK KNIKHNGNIS DDVIEIA++MRPR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVIEIAKIMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEIPQD 167
           S+AK+LSG+VKEILGTCVSVGCTVDGKDPKDLQ+EI+ GD++IP +
Sbjct: 121 SIAKELSGTVKEILGTCVSVGCTVDGKDPKDLQEEINSGDIDIPNE 166

[Close]
BLAST of CsaV3_3G035780 vs. TAIR10
Match: AT3G53430.1 (Ribosomal protein L11 family protein)

HSP 1 Score: 297.0 bits (759), Expect = 7.4e-81
Identity = 147/166 (88.55%), Postives = 162/166 (97.59%), Query Frame = 0 

Query: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKLDPSQ+V+V+VRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKK KNIKHNGNIS DDV EIAR+MRPR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEIPQD 167
           S+AK+LSG+V+EILGTCVSVGCTVDGKDPKDLQQEI +G++EIP++
Sbjct: 121 SIAKELSGTVREILGTCVSVGCTVDGKDPKDLQQEIQEGEIEIPEN 166

[Close]
BLAST of CsaV3_3G035780 vs. Swiss-Prot
Match: sp|P50883|RL121_ARATH (60S ribosomal protein L12-1 OS=Arabidopsis thaliana OX=3702 GN=RPL12A PE=2 SV=2)

HSP 1 Score: 298.1 bits (762), Expect = 6.0e-80
Identity = 148/166 (89.16%), Postives = 162/166 (97.59%), Query Frame = 0 

Query: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKLDPSQ+V+V+VRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKK KNIKHNGNIS DDV EIAR+MRPR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEIPQD 167
           S+AK+LSG+V+EILGTCVSVGCTVDGKDPKD+QQEI DG+VEIP++
Sbjct: 121 SIAKELSGTVREILGTCVSVGCTVDGKDPKDIQQEIQDGEVEIPEN 166

[Close]
BLAST of CsaV3_3G035780 vs. Swiss-Prot
Match: sp|Q9FF52|RL123_ARATH (60S ribosomal protein L12-3 OS=Arabidopsis thaliana OX=3702 GN=RPL12C PE=2 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 1.0e-79
Identity = 147/166 (88.55%), Postives = 162/166 (97.59%), Query Frame = 0 

Query: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKLDPSQ+V+V+VRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKK KNIKHNGNIS DDVIEIA++MRPR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVIEIAKIMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEIPQD 167
           S+AK+LSG+VKEILGTCVSVGCTVDGKDPKDLQ+EI+ GD++IP +
Sbjct: 121 SIAKELSGTVKEILGTCVSVGCTVDGKDPKDLQEEINSGDIDIPNE 166

[Close]
BLAST of CsaV3_3G035780 vs. Swiss-Prot
Match: sp|Q9LFH5|RL122_ARATH (60S ribosomal protein L12-2 OS=Arabidopsis thaliana OX=3702 GN=RPL12B PE=1 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 1.3e-79
Identity = 147/166 (88.55%), Postives = 162/166 (97.59%), Query Frame = 0 

Query: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKLDPSQ+V+V+VRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKK KNIKHNGNIS DDV EIAR+MRPR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEIPQD 167
           S+AK+LSG+V+EILGTCVSVGCTVDGKDPKDLQQEI +G++EIP++
Sbjct: 121 SIAKELSGTVREILGTCVSVGCTVDGKDPKDLQQEIQEGEIEIPEN 166

[Close]
BLAST of CsaV3_3G035780 vs. Swiss-Prot
Match: sp|O50003|RL12_PRUAR (60S ribosomal protein L12 OS=Prunus armeniaca OX=36596 GN=RPL12 PE=2 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 1.5e-78
Identity = 149/166 (89.76%), Postives = 161/166 (96.99%), Query Frame = 0 

Query: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPK DPSQVV+V+VRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETA +WKGLRVT
Sbjct: 1   MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETANDWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKH+G+ISLDDVIEIA++M+ R
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHSGHISLDDVIEIAKIMKHR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEIPQD 167
           SMAK+L+G+VKEIL TCVSVGCTVDGKDPKDLQQEI+DGDVEIP D
Sbjct: 121 SMAKELAGTVKEILRTCVSVGCTVDGKDPKDLQQEIADGDVEIPLD 166

[Close]
BLAST of CsaV3_3G035780 vs. Swiss-Prot
Match: sp|P0CT83|RL12A_SCHPO (60S ribosomal protein L12-A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpl1201 PE=3 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 4.6e-64
Identity = 120/166 (72.29%), Postives = 146/166 (87.95%), Query Frame = 0 

Query: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPK DP++V  +F+R  GGEV   S+LAPKIGPLGLSPKK+GEDIAK T K+WKGLRVT
Sbjct: 1   MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKAT-KDWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLT+QNRQA VSVVPSA+ALVIKALKEP RDRKK KN+ H+GN+SLD++IE+AR MR +
Sbjct: 61  VKLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVARTMRFK 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEIPQD 167
           S+AK+LSG+VKEILGT  SVGCTVDGK+P D+Q+EI +G++EIPQ+
Sbjct: 121 SLAKELSGTVKEILGTAFSVGCTVDGKNPHDVQKEIDNGEIEIPQE 165

[Close]
BLAST of CsaV3_3G035780 vs. TrEMBL
Match: tr|A0A0A0LAX8|A0A0A0LAX8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G739040 PE=3 SV=1)

HSP 1 Score: 321.2 bits (822), Expect = 1.3e-84
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0 

Query: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEIPQD 167
           SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEIPQD
Sbjct: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEIPQD 166

[Close]
BLAST of CsaV3_3G035780 vs. TrEMBL
Match: tr|A0A1S3BLM0|A0A1S3BLM0_CUCME (60S ribosomal protein L12-1 OS=Cucumis melo OX=3656 GN=LOC103491184 PE=3 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 3.0e-84
Identity = 165/166 (99.40%), Postives = 166/166 (100.00%), Query Frame = 0 

Query: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEIPQD 167
           SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEI+DGDVEIPQD
Sbjct: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 166

[Close]
BLAST of CsaV3_3G035780 vs. TrEMBL
Match: tr|A0A0A0KF33|A0A0A0KF33_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G445170 PE=3 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 3.0e-84
Identity = 165/166 (99.40%), Postives = 166/166 (100.00%), Query Frame = 0 

Query: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEIPQD 167
           SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEI+DGDVEIPQD
Sbjct: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 166

[Close]
BLAST of CsaV3_3G035780 vs. TrEMBL
Match: tr|A5C1K6|A5C1K6_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_08s0040g01870 PE=3 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 2.8e-82
Identity = 159/166 (95.78%), Postives = 165/166 (99.40%), Query Frame = 0 

Query: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPK DPSQVV+V+VRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAK+WKGLRVT
Sbjct: 1   MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIA++MRPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIAKIMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEIPQD 167
           SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEI+DGDVEIPQD
Sbjct: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEIADGDVEIPQD 166

[Close]
BLAST of CsaV3_3G035780 vs. TrEMBL
Match: tr|A0A0R0HHB6|A0A0R0HHB6_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_11G146300 PE=3 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 6.2e-82
Identity = 158/166 (95.18%), Postives = 164/166 (98.80%), Query Frame = 0 

Query: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPK DPSQ+V+VFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAK+WKGLRVT
Sbjct: 1   MPPKFDPSQIVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEIPQD 167
           SMAKDLSGS+KEILGTCVSVGCTVDGKDPKDLQQEISDGDVE+P D
Sbjct: 121 SMAKDLSGSIKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEVPLD 166

The following BLAST results are available for this feature:
BLAST of CsaV3_3G035780 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004137822.12.0e-84100.00PREDICTED: 60S ribosomal protein L12-1 [Cucumis sativus] >KGN58958.1 hypothetica... [more]
XP_004143249.14.5e-8499.40PREDICTED: 60S ribosomal protein L12-1-like [Cucumis sativus] >XP_008442680.1 PR... [more]
XP_022935531.11.3e-8398.8060S ribosomal protein L12-1-like [Cucurbita moschata] >XP_022983536.1 60S riboso... [more]
XP_022950157.13.8e-8397.5960S ribosomal protein L12-3 [Cucurbita moschata] >XP_023005871.1 60S ribosomal p... [more]
XP_023528339.11.5e-8298.1960S ribosomal protein L12-1-like [Cucurbita pepo subsp. pepo][more]
BLAST of CsaV3_3G035780 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G37190.13.3e-8189.16Ribosomal protein L11 family protein[more]
AT5G60670.15.7e-8188.55Ribosomal protein L11 family protein[more]
AT3G53430.17.4e-8188.55Ribosomal protein L11 family protein[more]
BLAST of CsaV3_3G035780 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P50883|RL121_ARATH6.0e-8089.1660S ribosomal protein L12-1 OS=Arabidopsis thaliana OX=3702 GN=RPL12A PE=2 SV=2[more]
sp|Q9FF52|RL123_ARATH1.0e-7988.5560S ribosomal protein L12-3 OS=Arabidopsis thaliana OX=3702 GN=RPL12C PE=2 SV=1[more]
sp|Q9LFH5|RL122_ARATH1.3e-7988.5560S ribosomal protein L12-2 OS=Arabidopsis thaliana OX=3702 GN=RPL12B PE=1 SV=1[more]
sp|O50003|RL12_PRUAR1.5e-7889.7660S ribosomal protein L12 OS=Prunus armeniaca OX=36596 GN=RPL12 PE=2 SV=1[more]
sp|P0CT83|RL12A_SCHPO4.6e-6472.2960S ribosomal protein L12-A OS=Schizosaccharomyces pombe (strain 972 / ATCC 2484... [more]
BLAST of CsaV3_3G035780 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LAX8|A0A0A0LAX8_CUCSA1.3e-84100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G739040 PE=3 SV=1[more]
tr|A0A1S3BLM0|A0A1S3BLM0_CUCME3.0e-8499.4060S ribosomal protein L12-1 OS=Cucumis melo OX=3656 GN=LOC103491184 PE=3 SV=1[more]
tr|A0A0A0KF33|A0A0A0KF33_CUCSA3.0e-8499.40Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G445170 PE=3 SV=1[more]
tr|A5C1K6|A5C1K6_VITVI2.8e-8295.78Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_08s0040g01870 PE=3 SV=... [more]
tr|A0A0R0HHB6|A0A0R0HHB6_SOYBN6.2e-8295.18Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_11G146300 PE=3 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: INTERPRO
TermDefinition
IPR020785Ribosomal_L11_CS
IPR036769Ribosomal_L11_C_sf
IPR020784Ribosomal_L11_N
IPR036796Ribosomal_L11/L12_N_sf
IPR020783Ribosomal_L11_C
IPR000911Ribosomal_L11/L12
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0000027 ribosomal large subunit assembly
cellular_component GO:0005840 ribosome
cellular_component GO:0022625 cytosolic large ribosomal subunit
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0019843 rRNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G035780.1CsaV3_3G035780.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000911Ribosomal protein L11/L12SMARTSM00649rl11ccoord: 13..145
e-value: 1.8E-56
score: 203.6
IPR000911Ribosomal protein L11/L12PANTHERPTHR1166160S RIBOSOMAL PROTEIN L12coord: 1..165
IPR000911Ribosomal protein L11/L12HAMAPMF_00736Ribosomal_L11coord: 9..146
score: 15.759
IPR000911Ribosomal protein L11/L12CDDcd00349Ribosomal_L11coord: 13..144
e-value: 1.46257E-50
score: 159.924
IPR020783Ribosomal protein L11, C-terminalPFAMPF00298Ribosomal_L11coord: 75..144
e-value: 8.0E-19
score: 67.8
IPR036796Ribosomal protein L11/L12, N-terminal domain superfamilyGENE3DG3DSA:3.30.1550.10coord: 1..81
e-value: 6.9E-41
score: 140.3
IPR036796Ribosomal protein L11/L12, N-terminal domain superfamilySUPERFAMILYSSF54747Ribosomal L11/L12e N-terminal domaincoord: 1..87
IPR020784Ribosomal protein L11, N-terminalPFAMPF03946Ribosomal_L11_Ncoord: 15..70
e-value: 9.0E-23
score: 79.7
IPR036769Ribosomal protein L11, C-terminal domain superfamilyGENE3DG3DSA:1.10.10.250coord: 82..164
e-value: 3.7E-42
score: 144.6
IPR036769Ribosomal protein L11, C-terminal domain superfamilySUPERFAMILYSSF46906Ribosomal protein L11, C-terminal domaincoord: 76..149
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 144..166
NoneNo IPR availablePANTHERPTHR11661:SF260S RIBOSOMAL PROTEIN L12coord: 1..165
IPR020785Ribosomal protein L11, conserved sitePROSITEPS00359RIBOSOMAL_L11coord: 131..146

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G035780CSPI03G33200Wild cucumber (PI 183967)cpicucB144
CsaV3_3G035780Cucsa.124370Cucumber (Gy14) v1cgycucB170
CsaV3_3G035780Cucsa.306920Cucumber (Gy14) v1cgycucB472
CsaV3_3G035780CmaCh07G009250Cucurbita maxima (Rimu)cmacucB1014
CsaV3_3G035780CmaCh14G002090Cucurbita maxima (Rimu)cmacucB0279
CsaV3_3G035780CmaCh06G003760Cucurbita maxima (Rimu)cmacucB0966
CsaV3_3G035780CmoCh03G012370Cucurbita moschata (Rifu)cmocucB0772
CsaV3_3G035780CmoCh14G002010Cucurbita moschata (Rifu)cmocucB0270
CsaV3_3G035780CmoCh06G003720Cucurbita moschata (Rifu)cmocucB0954
CsaV3_3G035780CmoCh07G009700Cucurbita moschata (Rifu)cmocucB0997
CsaV3_3G035780Cp4.1LG10g04680Cucurbita pepo (Zucchini)cpecucB0070
CsaV3_3G035780Cp4.1LG03g01880Cucurbita pepo (Zucchini)cpecucB0747
CsaV3_3G035780Cp4.1LG19g04010Cucurbita pepo (Zucchini)cpecucB0594
CsaV3_3G035780CsGy3G030890Cucumber (Gy14) v2cgybcucB117
CsaV3_3G035780CsGy6G023780Cucumber (Gy14) v2cgybcucB268
CsaV3_3G035780Carg00983Silver-seed gourdcarcucB0181
CsaV3_3G035780Carg03769Silver-seed gourdcarcucB0279
CsaV3_3G035780Carg15271Silver-seed gourdcarcucB0584
CsaV3_3G035780Cla008741Watermelon (97103) v1cucwmB276
CsaV3_3G035780Cla017820Watermelon (97103) v1cucwmB208
CsaV3_3G035780Cla018289Watermelon (97103) v1cucwmB275
CsaV3_3G035780MELO3C009338Melon (DHL92) v3.5.1cucmeB218
CsaV3_3G035780ClCG04G009040Watermelon (Charleston Gray)cucwcgB224
CsaV3_3G035780ClCG10G020320Watermelon (Charleston Gray)cucwcgB199
CsaV3_3G035780ClCG02G021160Watermelon (Charleston Gray)cucwcgB215
CsaV3_3G035780Lsi10G012670Bottle gourd (USVL1VR-Ls)cuclsiB177
CsaV3_3G035780Lsi01G013440Bottle gourd (USVL1VR-Ls)cuclsiB185
CsaV3_3G035780Lsi03G020280Bottle gourd (USVL1VR-Ls)cuclsiB203
CsaV3_3G035780MELO3C009338.2Melon (DHL92) v3.6.1cucmedB211
CsaV3_3G035780Cla97C10G203500Watermelon (97103) v2cucwmbB187
CsaV3_3G035780Cla97C02G047200Watermelon (97103) v2cucwmbB197
CsaV3_3G035780Cla97C04G075730Watermelon (97103) v2cucwmbB205
CsaV3_3G035780Bhi11G001784Wax gourdcucwgoB240
CsaV3_3G035780Bhi10G000447Wax gourdcucwgoB329
CsaV3_3G035780Bhi03G001316Wax gourdcucwgoB332
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CsaV3_3G035780CsaV3_6G039570Cucumber (Chinese Long) v3cuccucB136
The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G035780Cucumber (Chinese Long) v3cuccucB133
CsaV3_3G035780Cucumber (Chinese Long) v3cuccucB140
CsaV3_3G035780Silver-seed gourdcarcucB0367
CsaV3_3G035780Silver-seed gourdcarcucB0476
CsaV3_3G035780Cucumber (Gy14) v2cgybcucB273
CsaV3_3G035780Cucumber (Gy14) v1cgycucB584
CsaV3_3G035780Cucurbita maxima (Rimu)cmacucB0656
CsaV3_3G035780Cucurbita maxima (Rimu)cmacucB0712
CsaV3_3G035780Cucurbita maxima (Rimu)cmacucB0789
CsaV3_3G035780Cucurbita pepo (Zucchini)cpecucB1057
CsaV3_3G035780Cucurbita moschata (Rifu)cmocucB0643
CsaV3_3G035780Cucurbita moschata (Rifu)cmocucB0699
CsaV3_3G035780Cucurbita pepo (Zucchini)cpecucB0343
CsaV3_3G035780Wild cucumber (PI 183967)cpicucB334
CsaV3_3G035780Wild cucumber (PI 183967)cpicucB338
CsaV3_3G035780Melon (DHL92) v3.5.1cucmeB177
CsaV3_3G035780Melon (DHL92) v3.6.1cucmedB168
CsaV3_3G035780Wax gourdcucwgoB326
CsaV3_3G035780Wax gourdcucwgoB235