MELO3C008804 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C008804
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Methyltransferase-like protein
Location	chr8 : 24646212 .. 24646836 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACGCGTTCTTCCCCTATTTCAATTCAACTTTATAAAACTTGAAAACACCCTAATCCACTACTCTTCCAATTTCTATCCCCAAAATCCCTTTCTTCCATCTCATAATTTCCCCAAATTTTCACTTCTCCGATGTGTCCTCTCAGATTCATCCTCGTTTTCCTCTCTGCAATTCTCGCCGGATACTTCGCCTGGAGATCCGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCGATATATTCCAAGCGACTGAAGCTCCCGATAAATCGGCGCCACAAAACGAGAATCGGAGCGTGAGGGAGGACGGATTTGGAGTGAAGCGGATGGTTGAGAACGGATTCTGGACGTTCGTGGACATGGCGAGCGGGAGATTCTTGTGGAGGAATATGAACGAATCGATTCTCAACAAGAACAAGCAGGTTAATTAAGGAAGATTGGGAGTAAATTTCGTTTTGTTGATTCTTTTAATTTGAGTGTGTTGTTGGAATTGGAATTGGAAATGGGTGTTTCTTGATCCGATGGAGATTGAAATGTTCATACATCAATTTTAATGAAATGTAAATGTCGTTTGATGTTTAACTATATATATATATATAGAAACTTTAATGC

mRNA sequence

ACGCGTTCTTCCCCTATTTCAATTCAACTTTATAAAACTTGAAAACACCCTAATCCACTACTCTTCCAATTTCTATCCCCAAAATCCCTTTCTTCCATCTCATAATTTCCCCAAATTTTCACTTCTCCGATGTGTCCTCTCAGATTCATCCTCGTTTTCCTCTCTGCAATTCTCGCCGGATACTTCGCCTGGAGATCCGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCGATATATTCCAAGCGACTGAAGCTCCCGATAAATCGGCGCCACAAAACGAGAATCGGAGCGTGAGGGAGGACGGATTTGGAGTGAAGCGGATGGTTGAGAACGGATTCTGGACGTTCGTGGACATGGCGAGCGGGAGATTCTTGTGGAGGAATATGAACGAATCGATTCTCAACAAGAACAAGCAGGTTAATTAAGGAAGATTGGGAGTAAATTTCGTTTTGTTGATTCTTTTAATTTGAGTGTGTTGTTGGAATTGGAATTGGAAATGGGTGTTTCTTGATCCGATGGAGATTGAAATGTTCATACATCAATTTTAATGAAATGTAAATGTCGTTTGATGTTTAACTATATATATATATATAGAAACTTTAATGC

Coding sequence (CDS)

ATGTGTCCTCTCAGATTCATCCTCGTTTTCCTCTCTGCAATTCTCGCCGGATACTTCGCCTGGAGATCCGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCGATATATTCCAAGCGACTGAAGCTCCCGATAAATCGGCGCCACAAAACGAGAATCGGAGCGTGAGGGAGGACGGATTTGGAGTGAAGCGGATGGTTGAGAACGGATTCTGGACGTTCGTGGACATGGCGAGCGGGAGATTCTTGTGGAGGAATATGAACGAATCGATTCTCAACAAGAACAAGCAGGTTAATTAA

Protein sequence

MCPLRFILVFLSAILAGYFAWRSASSSSSSSSSSSSSSSSDIFQATEAPDKSAPQNENRSVREDGFGVKRMVENGFWTFVDMASGRFLWRNMNESILNKNKQVN*

Homology

[Close]

BLAST of MELO3C008804 vs. TAIR10
Match: AT5G18150.1 (AT5G18150.1 Methyltransferase-related protein)

HSP 1 Score: 84.0 bits (206), Expect = 6.2e-17
Identity = 42/94 (44.68%), Postives = 53/94 (56.38%), Query Frame = 1


Query: 1  MCPLRFILVFLSAILAGYFAWRSASSSSSSSSSSSSSSSSDIFQATEAPDKSAPQNENRS 60
          MCP+RF+LVF SA+LAGYFAW++ SSS                     P+  +P   N  
Sbjct: 1  MCPMRFLLVFFSAVLAGYFAWKTVSSS---------------------PEFDSPDELN-- 60

Query: 61 VREDGFGVKRMVENGFWTFVDMASGRFLWRNMNE 95
            +    +K+ +ENGFW FVDMASGR+LWRN+ E
Sbjct: 61 -EKQELNLKKKMENGFWVFVDMASGRYLWRNLKE 70

[Close]

BLAST of MELO3C008804 vs. TAIR10
Match: AT5G14602.1 (AT5G14602.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 84.0 bits (206), Expect = 6.2e-17
Identity = 45/94 (47.87%), Postives = 55/94 (58.51%), Query Frame = 1


Query: 1  MCPLRFILVFLSAILAGYFAWRSASSSSSSSSSSSSSSSSDIFQATEAPDKSAPQNENRS 60
          MCPLRF+LVF SA+LAGY AWR+ +S+    S        ++ QA EA +K         
Sbjct: 1  MCPLRFVLVFFSAVLAGYIAWRTVNSTPELFSD-------ELLQA-EAKEKQ-------- 60

Query: 61 VREDGFGVKRMVENGFWTFVDMASGRFLWRNMNE 95
              G   KR ++NG WTFVDMASGR+LWRN+ E
Sbjct: 61 ----GLDFKRKMDNGLWTFVDMASGRYLWRNLKE 74

The following BLAST results are available for this feature:

BLAST of MELO3C008804 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G18150.1	6.2e-17	44.68	Methyltransferase-related protein	[more]
AT5G14602.1	6.2e-17	47.87	FUNCTIONS IN: molecular_function unknown	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU49897	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C008804T1	MELO3C008804T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU49897	MU49897	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34132	FAMILY NOT NAMED	coord: 2..103 score: 1.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C008804	Csa4G192100	Cucumber (Chinese Long) v2	cumeB324
MELO3C008804	Cla012130	Watermelon (97103) v1	mewmB585
MELO3C008804	ClCG04G005330	Watermelon (Charleston Gray)	mewcgB532
MELO3C008804	Cla97C04G071890	Watermelon (97103) v2	mewmbB540
MELO3C008804	Bhi03G001839	Wax gourd	mewgoB652
MELO3C008804	CSPI04G11230	Wild cucumber (PI 183967)	cpimeB323
MELO3C008804	Cucsa.024090	Cucumber (Gy14) v1	cgymeB563
MELO3C008804	CmaCh07G011650	Cucurbita maxima (Rimu)	cmameB801
MELO3C008804	CmoCh07G012130	Cucurbita moschata (Rifu)	cmomeB785
MELO3C008804	Cp4.1LG19g01910	Cucurbita pepo (Zucchini)	cpemeB459
MELO3C008804	CsGy4G010790	Cucumber (Gy14) v2	cgybmeB280
MELO3C008804	Carg12606	Silver-seed gourd	carmeB0283
MELO3C008804	CsaV3_4G013260	Cucumber (Chinese Long) v3	cucmeB328

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C008804	Cucurbita maxima (Rimu)	cmameB610
MELO3C008804	Cucurbita moschata (Rifu)	cmomeB599
MELO3C008804	Cucurbita pepo (Zucchini)	cpemeB070
MELO3C008804	Bottle gourd (USVL1VR-Ls)	lsimeB157
MELO3C008804	Silver-seed gourd	carmeB0627