CSPI04G11230 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI04G11230
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Methyltransferase-related protein
Location	Chr4 : 9534505 .. 9535111 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCACAACACAAAGTCAATTAAATAACAATACTCAATACCATTCCCAAACCTCATCAATTCAATTACGCGTTCTTCCCCATTTTCAATTCAACATTATAAAAACTCAAATACACCCTAAATCCACTAATCTTCCAATTTCTACTCCCAAATTTTCACTTCTCCAATGTGTCCTCTCAGATTCATCCTCCTTTTCCTCTCTGCAATTCTCGCCGGATACTTCGCCTGGAGATCCGCTTCTTCTTCTTCCTCCTCCTCCGATATCTTTCAACCGACTGAAGCTTCCGATAAATCCGCGCCAGAAAACGAGAATCGGAGCGGGACGGAGGACGGACTTGGAGTGAACAGGATGGTTGAGAAGGGATTCTGGACGTTCGTGGACATGGCGAGCGGGAGATTCTTGTGGAGAAATTTGAACGGTTCGATTCTCAACAAGAACAAGCAGGTTAAGGAAGATTGAGAGTAATTACATTATGTTCATTCTTTTAATTTGATTATGTTGTTGGATTTGGATATATCGCTGTTTCTTGATCTGATGGAGATTGAAATGTTCATCACATAGAGAAACATAAAAGAAGATTTTAATGAAATGTAAATGTTTGATGTTTAT

mRNA sequence

ATGTGTCCTCTCAGATTCATCCTCCTTTTCCTCTCTGCAATTCTCGCCGGATACTTCGCCTGGAGATCCGCTTCTTCTTCTTCCTCCTCCTCCGATATCTTTCAACCGACTGAAGCTTCCGATAAATCCGCGCCAGAAAACGAGAATCGGAGCGGGACGGAGGACGGACTTGGAGTGAACAGGATGGTTGAGAAGGGATTCTGGACGTTCGTGGACATGGCGAGCGGGAGATTCTTGTGGAGAAATTTGAACGGTTCGATTCTCAACAAGAACAAGCAGGTTAAGGAAGATTGA

Coding sequence (CDS)

ATGTGTCCTCTCAGATTCATCCTCCTTTTCCTCTCTGCAATTCTCGCCGGATACTTCGCCTGGAGATCCGCTTCTTCTTCTTCCTCCTCCTCCGATATCTTTCAACCGACTGAAGCTTCCGATAAATCCGCGCCAGAAAACGAGAATCGGAGCGGGACGGAGGACGGACTTGGAGTGAACAGGATGGTTGAGAAGGGATTCTGGACGTTCGTGGACATGGCGAGCGGGAGATTCTTGTGGAGAAATTTGAACGGTTCGATTCTCAACAAGAACAAGCAGGTTAAGGAAGATTGA

Homology

[Close]

BLAST of CSPI04G11230 vs. TrEMBL
Match: A0A0A0KWN3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G192100 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 2.8e-44
Identity = 95/97 (97.94%), Postives = 95/97 (97.94%), Query Frame = 1


Query: 1  MCPLRFILLFLSAILAGYFAWRSASSSSSSSDIFQPTEASDKSAPENENRSGTEDGLGVN 60
          MCPLRFILLFLSAILAGYFAWRSASSSSSSSDIFQ TEASDKSAPENENRSGTED LGVN
Sbjct: 1  MCPLRFILLFLSAILAGYFAWRSASSSSSSSDIFQATEASDKSAPENENRSGTEDRLGVN 60

Query: 61 RMVEKGFWTFVDMASGRFLWRNLNGSILNKNKQVKED 98
          RMVEKGFWTFVDMASGRFLWRNLNGSILNKNKQVKED
Sbjct: 61 RMVEKGFWTFVDMASGRFLWRNLNGSILNKNKQVKED 97

[Close]

BLAST of CSPI04G11230 vs. TrEMBL
Match: A0A078IQ51_BRANA (BnaA02g03990D protein OS=Brassica napus GN=BnaA02g03990D PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 3.9e-14
Identity = 44/83 (53.01%), Postives = 53/83 (63.86%), Query Frame = 1


Query: 1  MCPLRFILLFLSAILAGYFAWRSASSSSSSSDIFQPTEASDKSAPENENRSGTEDGLGVN 60
          MCPLRF+L+F SA+LAGYFAW++ SSS        P E +DK             GL  N
Sbjct: 1  MCPLRFLLVFFSAVLAGYFAWKTTSSSPELISDDSPVELNDK------------QGLSFN 60

Query: 61 RMVEKGFWTFVDMASGRFLWRNL 84
          + +E GFW FVDMASGR+LWRNL
Sbjct: 61 KKMENGFWVFVDMASGRYLWRNL 71

[Close]

BLAST of CSPI04G11230 vs. TrEMBL
Match: W9QPI9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_014751 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 5.1e-14
Identity = 47/95 (49.47%), Postives = 62/95 (65.26%), Query Frame = 1


Query: 1  MCPLRFILLFLSAILAGYFAWRSASSSSSSSDIFQPTEASDKSAPENENRSGTEDGLGVN 60
          MCP+RFIL+F SA+LAGYFAW++A S S    I++ +  ++  AP  E  S       + 
Sbjct: 1  MCPMRFILVFFSAVLAGYFAWKTARSPSPG--IYEDS-TNENIAPREEKESD------LK 60

Query: 61 RMVEKGFWTFVDMASGRFLWRNLNGSILNKNKQVK 96
          RMV+ GFW FVDMASGR+LWRNL G    + + VK
Sbjct: 61 RMVQNGFWVFVDMASGRYLWRNLKGMENREEENVK 86

[Close]

BLAST of CSPI04G11230 vs. TrEMBL
Match: A0A151T4Z5_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_016643 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 5.1e-14
Identity = 47/95 (49.47%), Postives = 60/95 (63.16%), Query Frame = 1


Query: 1  MCPLRFILLFLSAILAGYFAWRSASSSSSSSDIFQPTEASDKSAPENENRSGTEDGLGVN 60
          MCPLRFIL+F SA+LAGYFAW++  SS       +   A +  +P+ EN           
Sbjct: 1  MCPLRFILVFFSAVLAGYFAWKTVRSSPEMELNSEDYSAQEDKSPKKEN-------FDFK 60

Query: 61 RMVEKGFWTFVDMASGRFLWRNLNGSILNKNKQVK 96
          +MVE GFW FVDMASGR+LWRNL  S  NK+ ++K
Sbjct: 61 KMVENGFWVFVDMASGRYLWRNLKPS--NKDVELK 86

[Close]

BLAST of CSPI04G11230 vs. TrEMBL
Match: V4LPN4_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10015170mg PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.1e-13
Identity = 43/82 (52.44%), Postives = 53/82 (64.63%), Query Frame = 1


Query: 1  MCPLRFILLFLSAILAGYFAWRSASSSSSSSDIFQPTEASDKSAPENENRSGTEDGLGVN 60
          MCPLRF+L+F SAILAGYFAW++ SSS   +    P E +DK            +GL   
Sbjct: 1  MCPLRFLLVFFSAILAGYFAWKTVSSSPDLNSDDSPVELNDK------------EGLNFR 60

Query: 61 RMVEKGFWTFVDMASGRFLWRN 83
          + +E GFW FVDMASGR+LWRN
Sbjct: 61 KKMENGFWVFVDMASGRYLWRN 70

[Close]

BLAST of CSPI04G11230 vs. TAIR10
Match: AT5G18150.1 (AT5G18150.1 Methyltransferase-related protein)

HSP 1 Score: 77.8 bits (190), Expect = 4.1e-15
Identity = 40/83 (48.19%), Postives = 53/83 (63.86%), Query Frame = 1


Query: 1  MCPLRFILLFLSAILAGYFAWRSASSSSSSSDIFQPTEASDKSAPENENRSGTEDGLGVN 60
          MCP+RF+L+F SA+LAGYFAW++ SSS    +   P E ++K              L + 
Sbjct: 1  MCPMRFLLVFFSAVLAGYFAWKTVSSSP---EFDSPDELNEKQE------------LNLK 60

Query: 61 RMVEKGFWTFVDMASGRFLWRNL 84
          + +E GFW FVDMASGR+LWRNL
Sbjct: 61 KKMENGFWVFVDMASGRYLWRNL 68

[Close]

BLAST of CSPI04G11230 vs. TAIR10
Match: AT5G14602.1 (AT5G14602.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 76.6 bits (187), Expect = 9.2e-15
Identity = 42/84 (50.00%), Postives = 52/84 (61.90%), Query Frame = 1


Query: 1  MCPLRFILLFLSAILAGYFAWRSASSSSSS-SDIFQPTEASDKSAPENENRSGTEDGLGV 60
          MCPLRF+L+F SA+LAGY AWR+ +S+    SD     EA +K             GL  
Sbjct: 1  MCPLRFVLVFFSAVLAGYIAWRTVNSTPELFSDELLQAEAKEKQ------------GLDF 60

Query: 61 NRMVEKGFWTFVDMASGRFLWRNL 84
           R ++ G WTFVDMASGR+LWRNL
Sbjct: 61 KRKMDNGLWTFVDMASGRYLWRNL 72

[Close]

BLAST of CSPI04G11230 vs. TAIR10
Match: AT5G58375.1 (AT5G58375.1 Methyltransferase-related protein)

HSP 1 Score: 60.8 bits (146), Expect = 5.2e-10
Identity = 37/85 (43.53%), Postives = 49/85 (57.65%), Query Frame = 1


Query: 1  MCPLRFILLFLSAILAGYFAWRSASSSSSS--SDIFQPTEASDKSAPENENRSGTEDGLG 60
          MCPLR IL+FLSA LAG+F  +  +S+S     D F   E +D  +    ++ G      
Sbjct: 1  MCPLRLILIFLSATLAGFFVLQKLNSTSDDPLDDSFTDAEHADDDSVSGFSKVGMA---- 60

Query: 61 VNRMVEKGFWTFVDMASGRFLWRNL 84
              ++ GFWT VDMASGR+LW NL
Sbjct: 61 ----MKSGFWTCVDMASGRYLWNNL 77

[Close]

BLAST of CSPI04G11230 vs. NCBI nr
Match: gi|700198780|gb|KGN53938.1| (hypothetical protein Csa_4G192100 [Cucumis sativus])

HSP 1 Score: 185.7 bits (470), Expect = 4.0e-44
Identity = 95/97 (97.94%), Postives = 95/97 (97.94%), Query Frame = 1


Query: 1  MCPLRFILLFLSAILAGYFAWRSASSSSSSSDIFQPTEASDKSAPENENRSGTEDGLGVN 60
          MCPLRFILLFLSAILAGYFAWRSASSSSSSSDIFQ TEASDKSAPENENRSGTED LGVN
Sbjct: 1  MCPLRFILLFLSAILAGYFAWRSASSSSSSSDIFQATEASDKSAPENENRSGTEDRLGVN 60

Query: 61 RMVEKGFWTFVDMASGRFLWRNLNGSILNKNKQVKED 98
          RMVEKGFWTFVDMASGRFLWRNLNGSILNKNKQVKED
Sbjct: 61 RMVEKGFWTFVDMASGRFLWRNLNGSILNKNKQVKED 97

[Close]

BLAST of CSPI04G11230 vs. NCBI nr
Match: gi|659082697|ref|XP_008441985.1| (PREDICTED: uncharacterized protein LOC103485982 [Cucumis melo])

HSP 1 Score: 155.2 bits (391), Expect = 5.8e-35
Identity = 83/103 (80.58%), Postives = 86/103 (83.50%), Query Frame = 1


Query: 1   MCPLRFILLFLSAILAGYFAWRSA---------SSSSSSSDIFQPTEASDKSAPENENRS 60
           MCPLRFIL+FLSAILAGYFAWRSA         SSSSSSSDIFQ TEA DKSAP+NENRS
Sbjct: 1   MCPLRFILVFLSAILAGYFAWRSASSSSSSSSSSSSSSSSDIFQATEAPDKSAPQNENRS 60

Query: 61  GTEDGLGVNRMVEKGFWTFVDMASGRFLWRNLNGSILNKNKQV 95
             EDG GV RMVE GFWTFVDMASGRFLWRN+N SILNKNKQV
Sbjct: 61  VREDGFGVKRMVENGFWTFVDMASGRFLWRNMNESILNKNKQV 103

[Close]

BLAST of CSPI04G11230 vs. NCBI nr
Match: gi|923748440|ref|XP_013673494.1| (PREDICTED: uncharacterized protein LOC106377799 [Brassica napus])

HSP 1 Score: 85.9 bits (211), Expect = 4.3e-14
Identity = 43/83 (51.81%), Postives = 53/83 (63.86%), Query Frame = 1


Query: 1  MCPLRFILLFLSAILAGYFAWRSASSSSSSSDIFQPTEASDKSAPENENRSGTEDGLGVN 60
          MCPLRF+L+F SA+LAGYFAW++ SSS        P E +DK             GL  N
Sbjct: 1  MCPLRFLLVFFSAVLAGYFAWKTVSSSPELISDVSPVELNDK------------QGLSFN 60

Query: 61 RMVEKGFWTFVDMASGRFLWRNL 84
          + +E GFW F+DMASGR+LWRNL
Sbjct: 61 KKMENGFWVFIDMASGRYLWRNL 71

[Close]

BLAST of CSPI04G11230 vs. NCBI nr
Match: gi|657998556|ref|XP_008391687.1| (PREDICTED: uncharacterized protein LOC103453877 [Malus domestica])

HSP 1 Score: 85.9 bits (211), Expect = 4.3e-14
Identity = 45/83 (54.22%), Postives = 55/83 (66.27%), Query Frame = 1


Query: 1  MCPLRFILLFLSAILAGYFAWRSASSSSSSSDIFQPTEASDKSAPENENRSGTE-DGLGV 60
          MCPLRFILLF SAILAGYFAWR+  SS S +DI   ++    +  EN   S  E +    
Sbjct: 1  MCPLRFILLFFSAILAGYFAWRTVHSSPSGTDIITSSQLDSTNINENMGSSKHEQEAFNF 60

Query: 61 NRMVEKGFWTFVDMASGRFLWRN 83
            M++ GFW FVDMASG++LWRN
Sbjct: 61 KFMIQNGFWVFVDMASGKYLWRN 83

[Close]

BLAST of CSPI04G11230 vs. NCBI nr
Match: gi|923918778|ref|XP_013728756.1| (PREDICTED: uncharacterized protein LOC106432462 [Brassica napus])

HSP 1 Score: 85.5 bits (210), Expect = 5.6e-14
Identity = 44/83 (53.01%), Postives = 53/83 (63.86%), Query Frame = 1


Query: 1  MCPLRFILLFLSAILAGYFAWRSASSSSSSSDIFQPTEASDKSAPENENRSGTEDGLGVN 60
          MCPLRF+L+F SA+LAGYFAW++ SSS        P E +DK             GL  N
Sbjct: 1  MCPLRFLLVFFSAVLAGYFAWKTVSSSPELISDDSPVELNDK------------QGLSFN 60

Query: 61 RMVEKGFWTFVDMASGRFLWRNL 84
          + +E GFW FVDMASGR+LWRNL
Sbjct: 61 KKMENGFWVFVDMASGRYLWRNL 71

The following BLAST results are available for this feature:

BLAST of CSPI04G11230 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI04G11230 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWN3_CUCSA	2.8e-44	97.94	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G192100 PE=4 SV=1	[more]
A0A078IQ51_BRANA	3.9e-14	53.01	BnaA02g03990D protein OS=Brassica napus GN=BnaA02g03990D PE=4 SV=1	[more]
W9QPI9_9ROSA	5.1e-14	49.47	Uncharacterized protein OS=Morus notabilis GN=L484_014751 PE=4 SV=1	[more]
A0A151T4Z5_CAJCA	5.1e-14	49.47	Uncharacterized protein OS=Cajanus cajan GN=KK1_016643 PE=4 SV=1	[more]
V4LPN4_EUTSA	1.1e-13	52.44	Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10015170mg PE=4 SV=1	[more]

BLAST of CSPI04G11230 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G18150.1	4.1e-15	48.19	Methyltransferase-related protein	[more]
AT5G14602.1	9.2e-15	50.00	FUNCTIONS IN: molecular_function unknown	[more]
AT5G58375.1	5.2e-10	43.53	Methyltransferase-related protein	[more]

BLAST of CSPI04G11230 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700198780\|gb\|KGN53938.1\|	4.0e-44	97.94	hypothetical protein Csa_4G192100 [Cucumis sativus]	[more]
gi\|659082697\|ref\|XP_008441985.1\|	5.8e-35	80.58	PREDICTED: uncharacterized protein LOC103485982 [Cucumis melo]	[more]
gi\|923748440\|ref\|XP_013673494.1\|	4.3e-14	51.81	PREDICTED: uncharacterized protein LOC106377799 [Brassica napus]	[more]
gi\|657998556\|ref\|XP_008391687.1\|	4.3e-14	54.22	PREDICTED: uncharacterized protein LOC103453877 [Malus domestica]	[more]
gi\|923918778\|ref\|XP_013728756.1\|	5.6e-14	53.01	PREDICTED: uncharacterized protein LOC106432462 [Brassica napus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G11230.1	CSPI04G11230.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34132	FAMILY NOT NAMED	coord: 2..96 score: 4.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI04G11230	Cla012130	Watermelon (97103) v1	cpiwmB346
CSPI04G11230	Csa4G192100	Cucumber (Chinese Long) v2	cpicuB183
CSPI04G11230	MELO3C008804	Melon (DHL92) v3.5.1	cpimeB323
CSPI04G11230	ClCG04G005330	Watermelon (Charleston Gray)	cpiwcgB317
CSPI04G11230	MELO3C008804.2	Melon (DHL92) v3.6.1	cpimedB314
CSPI04G11230	CsaV3_4G013260	Cucumber (Chinese Long) v3	cpicucB213
CSPI04G11230	Cla97C04G071890	Watermelon (97103) v2	cpiwmbB309
CSPI04G11230	Bhi03G001839	Wax gourd	cpiwgoB408
CSPI04G11230	Cucsa.024090	Cucumber (Gy14) v1	cgycpiB513
CSPI04G11230	CmaCh07G011650	Cucurbita maxima (Rimu)	cmacpiB877
CSPI04G11230	CmoCh07G012130	Cucurbita moschata (Rifu)	cmocpiB857
CSPI04G11230	Cp4.1LG19g01910	Cucurbita pepo (Zucchini)	cpecpiB498
CSPI04G11230	CsGy4G010790	Cucumber (Gy14) v2	cgybcpiB168
CSPI04G11230	Carg12606	Silver-seed gourd	carcpiB0314

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI04G11230	Silver-seed gourd	carcpiB0661
CSPI04G11230	Cucurbita maxima (Rimu)	cmacpiB672
CSPI04G11230	Cucurbita moschata (Rifu)	cmocpiB663
CSPI04G11230	Cucurbita pepo (Zucchini)	cpecpiB076
CSPI04G11230	Bottle gourd (USVL1VR-Ls)	cpilsiB257