CsaV3_4G013260 (gene) Cucumber (Chinese Long) v3

NameCsaV3_4G013260
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionMethyltransferase-related protein
Locationchr4 : 9622642 .. 9624549 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTCCTCTCAGATTCATCCTCCTTTTCCTCTCTGCAATTCTCGCCGGATACTTCGCCTGGAGATCCGCTTCTTCTTCTTCCTCCTCCTCCGATATCTTTCAAGCGACTGAAGCTTCCGATAAATCCGCGCCAGAAAACGAGAATCGGAGCGGGACGGAGGACCGACTTGGAGTGAACAGGATGGTTGAGAAGGGATTCTGGACGTTCGTGGACATGGCGAGCGGGAGATTCTTGTGGAGAAATTTGAACGGTTCGATTCTCAACAAGAACAAGCAGGTTAAGGAAGATTGAGAGTAATTACATTATGTTCATTCTTTTAATTTGATTATGTTGTTGGATTTGGATATATCGCTGTTTCTTGATCTGATGGAGATTGAAATGTTCATCACATAGAGAAACATAAAAGAAGATTTTAATGAAATGTAAATGTTTGATGTTTATATTTTCTTTTTTGAATAACCAATTATATATTGTTCATTTAATAATAAATAGAGAAAACGAAAATTATGATATATTTAATGGACAAAAATTAATTATTGACTTTAATCACTTCTTAACGAAATTGTTATTTGTTTTTCAAGAGCTTGTTAATTATTGATTGTTAGACTTTTAATTTTTTTAATACAATCTTTCGGGTGCATGTCCTGTGCCATGTTTACTATTGACCTTTTTTTTTTTAAGTCTTCAACACTATATGGGTTATGAATTTTTCATTCAAGATAGTCATTTTATGAGTTGTAGGAATAATGGTGCCTAATTAGTTATATTCAATGTGTGAATATAAAAACAAACAATGAAAAGAATTAGTTTAGGGTGTGCATTCCACATATTTTGATTTTCTTCCTATTTTTCGCTGAAAGGAAACTTTATAATAAACGTGTATAATAAGGGCTATAATTATTGATATTATCGTAGAAACTACTAAATACAAATTCAAAATAAAAGAATAAAACACTCGATGTGAAGAGATTATTAGAAACAAGACGATCAAAGATTATTTGTCATGCCACTCGATGTAGGAGACCATTATGATATAATTGATATTCAAACTCAAAAAATCTATTTTCGAAAAGACTCGGACATAATGACATCGTTGTTCTCATAGTTGCATTCCTAAGAAAAAACTAAAACAATAAAATTTAAAGAGTAAGTTTGAGTTTATTTAGTATTGTTGGAAATAACTTGTGGGTTTAGGAACCTAAGCAAAGAACAAGATCCATAAGTAAACTTCAATGCTTCGGTCCTATATTGGAGAGTTTAGCATTGTAGGGTATAAACACCAAGGTATGCCAATTGTAACGAGAAAATGTGTCGGTGGTGATAACATTATTAACTATGCTATTACAAGTGTGCCATTGTTGTTTGTTTGGTCAGACGAGGAAGGTTGAGTTTTATTTCCTATTTGTTTAATTTGTATTTATTATTTTCTTACAATTTTTCTTCCGTTGAAAAATCCTAGTCGAACGTTTCTCTTTCTCTTGATTCTATTTCTTATTCTGATGAGTGCACGTTTGAATAGTTGTCACGTCACAACAATTCCTTTCGACATCCATTTACAACAAGTACAACTACAAATAACTTAGACTAGTTTTTAACCAATAAAACTTGAGTTCCATAGCATTTAGGTTTCTTCCCTTAATTTTGGATGGATTCAAGATTGGGATAGTTGTAAGGAAGAATTTTGGATGATATTCGGTTTGCCAAGGTTGCTTCAACTCTGGTCACGTAATGATTGAAGCTACTAAAGCTTATGGGGTTGTTGAAGGGATTCAATGGGAGAAGGAAAAAGGGTTGGATGTTGTTTGGTTGGAGATGGGTGCTAAAACCATTGTCGCCAAAGTCCTTAAATTTAAATTTTCATTGGCTACCAGTTCAGAGTCATTGATGTCAAAGTTGTTGAACTAA

mRNA sequence

ATGTGTCCTCTCAGATTCATCCTCCTTTTCCTCTCTGCAATTCTCGCCGGATACTTCGCCTGGAGATCCGCTTCTTCTTCTTCCTCCTCCTCCGATATCTTTCAAGCGACTGAAGCTTCCGATAAATCCGCGCCAGAAAACGAGAATCGGAGCGGGACGGAGGACCGACTTGGAGTGAACAGGATGGTTGAGAAGGGATTCTGGACGTTCGTGGACATGGCGAGCGGGAGATTCTTGTGGAGAAATTTGAACGGTTGCTTCAACTCTGGTCACGTAATGATTGAAGCTACTAAAGCTTATGGGGTTGTTGAAGGGATTCAATGGGAGAAGGAAAAAGGGTTGGATGTTGTTTGGTTGGAGATGGGTGCTAAAACCATTGTCGCCAAAGTCCTTAAATTTAAATTTTCATTGGCTACCAGTTCAGAGTCATTGATGTCAAAGTTGTTGAACTAA

Coding sequence (CDS)

ATGTGTCCTCTCAGATTCATCCTCCTTTTCCTCTCTGCAATTCTCGCCGGATACTTCGCCTGGAGATCCGCTTCTTCTTCTTCCTCCTCCTCCGATATCTTTCAAGCGACTGAAGCTTCCGATAAATCCGCGCCAGAAAACGAGAATCGGAGCGGGACGGAGGACCGACTTGGAGTGAACAGGATGGTTGAGAAGGGATTCTGGACGTTCGTGGACATGGCGAGCGGGAGATTCTTGTGGAGAAATTTGAACGGTTGCTTCAACTCTGGTCACGTAATGATTGAAGCTACTAAAGCTTATGGGGTTGTTGAAGGGATTCAATGGGAGAAGGAAAAAGGGTTGGATGTTGTTTGGTTGGAGATGGGTGCTAAAACCATTGTCGCCAAAGTCCTTAAATTTAAATTTTCATTGGCTACCAGTTCAGAGTCATTGATGTCAAAGTTGTTGAACTAA

Protein sequence

MCPLRFILLFLSAILAGYFAWRSASSSSSSSDIFQATEASDKSAPENENRSGTEDRLGVNRMVEKGFWTFVDMASGRFLWRNLNGCFNSGHVMIEATKAYGVVEGIQWEKEKGLDVVWLEMGAKTIVAKVLKFKFSLATSSESLMSKLLN
BLAST of CsaV3_4G013260 vs. NCBI nr
Match: KGN53938.1 (hypothetical protein Csa_4G192100 [Cucumis sativus])

HSP 1 Score: 163.3 bits (412), Expect = 6.4e-37
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0

Query: 1  MCPLRFILLFLSAILAGYFAWRSASSSXXXSDIFQATEASDKSAPENENRSGTEDRLGVN 60
          MCPLRFILLFLSAILAGYFAWRSASSSXXXSDIFQATEASDKSAPENENRSGTEDRLGVN
Sbjct: 1  MCPLRFILLFLSAILAGYFAWRSASSSXXXSDIFQATEASDKSAPENENRSGTEDRLGVN 60

Query: 61 RMVEKGFWTFVDMASGRFLWRNLNG 86
          RMVEKGFWTFVDMASGRFLWRNLNG
Sbjct: 61 RMVEKGFWTFVDMASGRFLWRNLNG 85

BLAST of CsaV3_4G013260 vs. NCBI nr
Match: XP_008441985.1 (PREDICTED: uncharacterized protein LOC103485982 [Cucumis melo])

HSP 1 Score: 121.7 bits (304), Expect = 2.1e-24
Identity = 68/93 (73.12%), Postives = 71/93 (76.34%), Query Frame = 0

Query: 1  MCPLRFILLFLSAILAGYFAWRS---------ASSSXXXSDIFQATEASDKSAPENENRS 60
          MCPLRFIL+FLSAILAGYFAWRS             XXX  IFQATEA DKSAP+NENRS
Sbjct: 1  MCPLRFILVFLSAILAGYFAWRSXXXXXXXXXXXXXXXXXXIFQATEAPDKSAPQNENRS 60

Query: 61 GTEDRLGVNRMVEKGFWTFVDMASGRFLWRNLN 85
            ED  GV RMVE GFWTFVDMASGRFLWRN+N
Sbjct: 61 VREDGFGVKRMVENGFWTFVDMASGRFLWRNMN 93

BLAST of CsaV3_4G013260 vs. NCBI nr
Match: XP_022156242.1 (uncharacterized protein LOC111023174 [Momordica charantia])

HSP 1 Score: 95.9 bits (237), Expect = 1.3e-16
Identity = 52/85 (61.18%), Postives = 60/85 (70.59%), Query Frame = 0

Query: 1  MCPLRFILLFLSAILAGYFAWRSASSSXXXSDIFQATEASDKSAPENENRSGTEDRLGVN 60
          MCPLRFIL+FLSA+LAGY AWRSASS    S I  +  AS+KS P +E R       GV 
Sbjct: 1  MCPLRFILVFLSAVLAGYVAWRSASS----SSISSSDVASEKSPPSDEKR-------GVG 60

Query: 61 RMVEKGFWTFVDMASGRFLWRNLNG 86
            ++ GFW FVDMASGR+LWRNLNG
Sbjct: 61 TTIQNGFWIFVDMASGRYLWRNLNG 74

BLAST of CsaV3_4G013260 vs. NCBI nr
Match: XP_010558727.1 (PREDICTED: uncharacterized protein LOC104827276 [Tarenaya hassleriana])

HSP 1 Score: 89.4 bits (220), Expect = 1.2e-14
Identity = 50/91 (54.95%), Postives = 57/91 (62.64%), Query Frame = 0

Query: 1  MCPLRFILLFLSAILAGYFAWRSASSSXXXSDIFQATEASDKSAPENENRSGTEDRLGVN 60
          MCPLRFIL+F SA+LAGYFAWR+  S    SD   A   S  S  E +++ G        
Sbjct: 1  MCPLRFILVFFSAVLAGYFAWRTVRS----SDHSVADSISGDSPVEQKDKIG----FNFK 60

Query: 61 RMVEKGFWTFVDMASGRFLWRNLNGCFNSGH 92
          R VEKGFW FVDMASGR+LWRNLN     GH
Sbjct: 61 RTVEKGFWVFVDMASGRYLWRNLNELREKGH 83

BLAST of CsaV3_4G013260 vs. NCBI nr
Match: XP_008391687.2 (PREDICTED: uncharacterized protein LOC103453877 [Malus domestica])

HSP 1 Score: 86.7 bits (213), Expect = 7.6e-14
Identity = 47/93 (50.54%), Postives = 58/93 (62.37%), Query Frame = 0

Query: 1  MCPLRFILLFLSAILAGYFAWRSASSSXXXSDIFQATEASDKSAPENENRSGTE-DRLGV 60
          MCPLRFILLF SAILAGYFAWR+  SS   +DI  +++    +  EN   S  E +    
Sbjct: 1  MCPLRFILLFFSAILAGYFAWRTVHSSPSGTDIITSSQLDSTNINENMGSSKHEQEAFNF 60

Query: 61 NRMVEKGFWTFVDMASGRFLWRNLNGCFNSGHV 93
            M++ GFW FVDMASG++LWRN     N G V
Sbjct: 61 KFMIQNGFWVFVDMASGKYLWRNFKE-MNEGKV 92

BLAST of CsaV3_4G013260 vs. TAIR10
Match: AT5G18150.1 (Methyltransferase-related protein)

HSP 1 Score: 76.6 bits (187), Expect = 1.4e-14
Identity = 39/83 (46.99%), Postives = 53/83 (63.86%), Query Frame = 0

Query: 1  MCPLRFILLFLSAILAGYFAWRSASSSXXXSDIFQATEASDKSAPENENRSGTEDRLGVN 60
          MCP+RF+L+F SA+LAGYFAW++ SSS             +  +P+  N    +  L + 
Sbjct: 1  MCPMRFLLVFFSAVLAGYFAWKTVSSS------------PEFDSPDELNE---KQELNLK 60

Query: 61 RMVEKGFWTFVDMASGRFLWRNL 84
          + +E GFW FVDMASGR+LWRNL
Sbjct: 61 KKMENGFWVFVDMASGRYLWRNL 68

BLAST of CsaV3_4G013260 vs. TAIR10
Match: AT5G14602.1 (FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 76.3 bits (186), Expect = 1.9e-14
Identity = 41/84 (48.81%), Postives = 51/84 (60.71%), Query Frame = 0

Query: 1  MCPLRFILLFLSAILAGYFAWRSASSS-XXXSDIFQATEASDKSAPENENRSGTEDRLGV 60
          MCPLRF+L+F SA+LAGY AWR+ +S+    SD     EA +K              L  
Sbjct: 1  MCPLRFVLVFFSAVLAGYIAWRTVNSTPELFSDELLQAEAKEKQG------------LDF 60

Query: 61 NRMVEKGFWTFVDMASGRFLWRNL 84
           R ++ G WTFVDMASGR+LWRNL
Sbjct: 61 KRKMDNGLWTFVDMASGRYLWRNL 72

BLAST of CsaV3_4G013260 vs. TAIR10
Match: AT5G58375.1 (Methyltransferase-related protein)

HSP 1 Score: 61.2 bits (147), Expect = 6.2e-10
Identity = 38/91 (41.76%), Postives = 52/91 (57.14%), Query Frame = 0

Query: 1  MCPLRFILLFLSAILAGYFAWR--SASSSXXXSDIFQATEASDKSAPENENRSGTEDRLG 60
          MCPLR IL+FLSA LAG+F  +  +++S     D F   E +D  +    ++        
Sbjct: 1  MCPLRLILIFLSATLAGFFVLQKLNSTSDDPLDDSFTDAEHADDDSVSGFSK-------- 60

Query: 61 VNRMVEKGFWTFVDMASGRFLWRNLNGCFNS 90
          V   ++ GFWT VDMASGR+LW NL  C N+
Sbjct: 61 VGMAMKSGFWTCVDMASGRYLWNNL--CSNA 81

BLAST of CsaV3_4G013260 vs. TrEMBL
Match: tr|A0A0A0KWN3|A0A0A0KWN3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G192100 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 4.2e-37
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0

Query: 1  MCPLRFILLFLSAILAGYFAWRSASSSXXXSDIFQATEASDKSAPENENRSGTEDRLGVN 60
          MCPLRFILLFLSAILAGYFAWRSASSSXXXSDIFQATEASDKSAPENENRSGTEDRLGVN
Sbjct: 1  MCPLRFILLFLSAILAGYFAWRSASSSXXXSDIFQATEASDKSAPENENRSGTEDRLGVN 60

Query: 61 RMVEKGFWTFVDMASGRFLWRNLNG 86
          RMVEKGFWTFVDMASGRFLWRNLNG
Sbjct: 61 RMVEKGFWTFVDMASGRFLWRNLNG 85

BLAST of CsaV3_4G013260 vs. TrEMBL
Match: tr|A0A1S3B5E4|A0A1S3B5E4_CUCME (uncharacterized protein LOC103485982 OS=Cucumis melo OX=3656 GN=LOC103485982 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.4e-24
Identity = 68/93 (73.12%), Postives = 71/93 (76.34%), Query Frame = 0

Query: 1  MCPLRFILLFLSAILAGYFAWRS---------ASSSXXXSDIFQATEASDKSAPENENRS 60
          MCPLRFIL+FLSAILAGYFAWRS             XXX  IFQATEA DKSAP+NENRS
Sbjct: 1  MCPLRFILVFLSAILAGYFAWRSXXXXXXXXXXXXXXXXXXIFQATEAPDKSAPQNENRS 60

Query: 61 GTEDRLGVNRMVEKGFWTFVDMASGRFLWRNLN 85
            ED  GV RMVE GFWTFVDMASGRFLWRN+N
Sbjct: 61 VREDGFGVKRMVENGFWTFVDMASGRFLWRNMN 93

BLAST of CsaV3_4G013260 vs. TrEMBL
Match: tr|A0A2P5ALZ8|A0A2P5ALZ8_PARAD (Methyltransferase-related protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_319090 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.1e-13
Identity = 45/98 (45.92%), Postives = 60/98 (61.22%), Query Frame = 0

Query: 1  MCPLRFILLFLSAILAGYFAWRSASSSXXXSDIFQATEASDKSAPENENRSGTEDRLGVN 60
          MCPLRFIL+F SA+LAGYFAW++  SS   +D+       +K +P+       E+  G  
Sbjct: 1  MCPLRFILVFFSAVLAGYFAWKTVGSS-RGADLDYDDSIKEKISPK-------EEETGFK 60

Query: 61 RMVEKGFWTFVDMASGRFLWRNLNGCFNSGHVMIEATK 99
          R+V+  FW FVDMASGR+LWRNL    N G  +   +K
Sbjct: 61 RIVQHSFWVFVDMASGRYLWRNLGDMKNKGEKVKSGSK 90

BLAST of CsaV3_4G013260 vs. TrEMBL
Match: tr|A0A1Q3DJB3|A0A1Q3DJB3_CEPFO (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_22415 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.5e-13
Identity = 44/83 (53.01%), Postives = 52/83 (62.65%), Query Frame = 0

Query: 1  MCPLRFILLFLSAILAGYFAWRSASSSXXXSDIFQATEASDKSAPENENRSGTEDRLGVN 60
          MCPLRFIL+FLSA+LAGYFAWR+  SS    DI        K     +N    +      
Sbjct: 1  MCPLRFILVFLSAVLAGYFAWRTVRSSPDIDDIV------SKDTMVEKNSLKDKQEFNFI 60

Query: 61 RMVEKGFWTFVDMASGRFLWRNL 84
          RM++ GFW FVDMASGR+LWRNL
Sbjct: 61 RMIQNGFWVFVDMASGRYLWRNL 77

BLAST of CsaV3_4G013260 vs. TrEMBL
Match: tr|A0A1S3VD14|A0A1S3VD14_VIGRR (uncharacterized protein LOC106773783 OS=Vigna radiata var. radiata OX=3916 GN=LOC106773783 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.3e-13
Identity = 44/83 (53.01%), Postives = 57/83 (68.67%), Query Frame = 0

Query: 1  MCPLRFILLFLSAILAGYFAWRSASSSXXXSDIFQATEASDKSAPENENRSGTEDRLGVN 60
          MCPLRFIL+F SA+LAGYFAWR+  S     ++F     S+ SA   E+RS  ++     
Sbjct: 1  MCPLRFILVFFSAVLAGYFAWRTVRSDPKI-EVF-----SEDSA--EEDRSSKKEDFDFK 60

Query: 61 RMVEKGFWTFVDMASGRFLWRNL 84
          +M+E GFW F+DMASGR+LWRNL
Sbjct: 61 KMIENGFWVFIDMASGRYLWRNL 75

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN53938.16.4e-37100.00hypothetical protein Csa_4G192100 [Cucumis sativus][more]
XP_008441985.12.1e-2473.12PREDICTED: uncharacterized protein LOC103485982 [Cucumis melo][more]
XP_022156242.11.3e-1661.18uncharacterized protein LOC111023174 [Momordica charantia][more]
XP_010558727.11.2e-1454.95PREDICTED: uncharacterized protein LOC104827276 [Tarenaya hassleriana][more]
XP_008391687.27.6e-1450.54PREDICTED: uncharacterized protein LOC103453877 [Malus domestica][more]
Match NameE-valueIdentityDescription
AT5G18150.11.4e-1446.99Methyltransferase-related protein[more]
AT5G14602.11.9e-1448.81FUNCTIONS IN: molecular_function unknown[more]
AT5G58375.16.2e-1041.76Methyltransferase-related protein[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0KWN3|A0A0A0KWN3_CUCSA4.2e-37100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G192100 PE=4 SV=1[more]
tr|A0A1S3B5E4|A0A1S3B5E4_CUCME1.4e-2473.12uncharacterized protein LOC103485982 OS=Cucumis melo OX=3656 GN=LOC103485982 PE=... [more]
tr|A0A2P5ALZ8|A0A2P5ALZ8_PARAD1.1e-1345.92Methyltransferase-related protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14... [more]
tr|A0A1Q3DJB3|A0A1Q3DJB3_CEPFO1.5e-1353.01Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_22415 PE=4... [more]
tr|A0A1S3VD14|A0A1S3VD14_VIGRR3.3e-1353.01uncharacterized protein LOC106773783 OS=Vigna radiata var. radiata OX=3916 GN=LO... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G013260.1CsaV3_4G013260.1mRNA


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34132:SF1EMB|CAB87627.1coord: 1..86
NoneNo IPR availablePANTHERPTHR34132FAMILY NOT NAMEDcoord: 1..86