Cla012130 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla012130
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr4 : 15797557 .. 15797862 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTCCTCTCAGATTCATCCTCGTTTTCCTCTCTGCAATTCTCGCCGGATACATCGCCTGGAGATCCGCTTCTTCTTCTTCTTCTTCTTCCTCGTCGGACATCTTTCAGGCGACTGAAGCTTCCGATAAATCGCCGCCGAAAAACGAGAATCGGAGCGTAACGGAGGAAGGATTCGGATTGAAGAGAACGATTCAGAACGGATTCTGGACTTTCGTCGACATGGCGAGCGGGAGATTCCTGTGGAGGAATTTGAACGCTTCGATTCTCAACAAAAAGAATCAGGTTAAGGAAGATCGAGAGTAA

mRNA sequence

ATGTGTCCTCTCAGATTCATCCTCGTTTTCCTCTCTGCAATTCTCGCCGGATACATCGCCTGGAGATCCGCTTCTTCTTCTTCTTCTTCTTCCTCGTCGGACATCTTTCAGGCGACTGAAGCTTCCGATAAATCGCCGCCGAAAAACGAGAATCGGAGCGTAACGGAGGAAGGATTCGGATTGAAGAGAACGATTCAGAACGGATTCTGGACTTTCGTCGACATGGCGAGCGGGAGATTCCTGTGGAGGAATTTGAACGCTTCGATTCTCAACAAAAAGAATCAGGTTAAGGAAGATCGAGAGTAA

Coding sequence (CDS)

ATGTGTCCTCTCAGATTCATCCTCGTTTTCCTCTCTGCAATTCTCGCCGGATACATCGCCTGGAGATCCGCTTCTTCTTCTTCTTCTTCTTCCTCGTCGGACATCTTTCAGGCGACTGAAGCTTCCGATAAATCGCCGCCGAAAAACGAGAATCGGAGCGTAACGGAGGAAGGATTCGGATTGAAGAGAACGATTCAGAACGGATTCTGGACTTTCGTCGACATGGCGAGCGGGAGATTCCTGTGGAGGAATTTGAACGCTTCGATTCTCAACAAAAAGAATCAGGTTAAGGAAGATCGAGAGTAA

Protein sequence

MCPLRFILVFLSAILAGYIAWRSASSSSSSSSSDIFQATEASDKSPPKNENRSVTEEGFGLKRTIQNGFWTFVDMASGRFLWRNLNASILNKKNQVKEDRE

Homology

[Close]

BLAST of Cla012130 vs. TrEMBL
Match: A0A0A0KWN3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G192100 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 1.7e-36
Identity = 80/99 (80.81%), Postives = 86/99 (86.87%), Query Frame = 1


Query: 1   MCPLRFILVFLSAILAGYIAWRSASSSSSSSSSDIFQATEASDKSPPKNENRSVTEEGFG 60
           MCPLRFIL+FLSAILAGY AWRSA  SSSSSSSDIFQATEASDKS P+NENRS TE+  G
Sbjct: 1   MCPLRFILLFLSAILAGYFAWRSA--SSSSSSSDIFQATEASDKSAPENENRSGTEDRLG 60

Query: 61  LKRTIQNGFWTFVDMASGRFLWRNLNASILNKKNQVKED 100
           + R ++ GFWTFVDMASGRFLWRNLN SILNK  QVKED
Sbjct: 61  VNRMVEKGFWTFVDMASGRFLWRNLNGSILNKNKQVKED 97

[Close]

BLAST of Cla012130 vs. TrEMBL
Match: A0A151T4Z5_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_016643 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 6.7e-17
Identity = 52/98 (53.06%), Postives = 64/98 (65.31%), Query Frame = 1


Query: 1  MCPLRFILVFLSAILAGYIAWRSASSSSSSS-SSDIFQATEASDKSPPKNENRSVTEEGF 60
          MCPLRFILVF SA+LAGY AW++  SS     +S+ + A E  DKSP K        E F
Sbjct: 1  MCPLRFILVFFSAVLAGYFAWKTVRSSPEMELNSEDYSAQE--DKSPKK--------ENF 60

Query: 61 GLKRTIQNGFWTFVDMASGRFLWRNLNASILNKKNQVK 98
            K+ ++NGFW FVDMASGR+LWRNL  S  NK  ++K
Sbjct: 61 DFKKMVENGFWVFVDMASGRYLWRNLKPS--NKDVELK 86

[Close]

BLAST of Cla012130 vs. TrEMBL
Match: G7KPM7_MEDTR (Methyltransferase-like protein OS=Medicago truncatula GN=MTR_6g029390 PE=2 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.3e-16
Identity = 51/100 (51.00%), Postives = 63/100 (63.00%), Query Frame = 1


Query: 1   MCPLRFILVFLSAILAGYIAWRSASSSSSSSSSDIFQATEASDKSPPKNENRSVTEEGFG 60
           MCPLRFILVF SA+LAGY AWR+  SS +   +      E  +KSP K E+       F 
Sbjct: 1   MCPLRFILVFFSAVLAGYFAWRTVRSSPNIDLACDDSIEE--EKSPFKKED-------FD 60

Query: 61  LKRTIQNGFWTFVDMASGRFLWRNLNASILNKKNQVKEDR 101
            K+ IQNGFW FVDMASGR+LWRNL  +  NK  ++K  +
Sbjct: 61  FKKMIQNGFWVFVDMASGRYLWRNLRQT--NKDEELKSSK 89

[Close]

BLAST of Cla012130 vs. TrEMBL
Match: B3H764_ARATH (Uncharacterized protein OS=Arabidopsis thaliana GN=At5g14602 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 4.3e-16
Identity = 46/85 (54.12%), Postives = 57/85 (67.06%), Query Frame = 1


Query: 1  MCPLRFILVFLSAILAGYIAWRSASSSSSSSSSDIFQATEASDKSPPKNENRSVTEEGFG 60
          MCPLRF+LVF SA+LAGYIAWR+ +S+    S ++ QA EA +K            +G  
Sbjct: 1  MCPLRFVLVFFSAVLAGYIAWRTVNSTPELFSDELLQA-EAKEK------------QGLD 60

Query: 61 LKRTIQNGFWTFVDMASGRFLWRNL 86
           KR + NG WTFVDMASGR+LWRNL
Sbjct: 61 FKRKMDNGLWTFVDMASGRYLWRNL 72

[Close]

BLAST of Cla012130 vs. TrEMBL
Match: A0A061F3J3_THECC (Methyltransferase-related protein, putative OS=Theobroma cacao GN=TCM_026468 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 5.7e-16
Identity = 46/93 (49.46%), Postives = 59/93 (63.44%), Query Frame = 1


Query: 1  MCPLRFILVFLSAILAGYIAWRSASSSSSSSSSDIFQATEASDKSPPKNENRSVTEEGFG 60
          MCP+RF+LVF SA+LAGY+AWR+  SSS          +E SDK   K++        F 
Sbjct: 1  MCPMRFLLVFFSAVLAGYVAWRTVRSSSDIDDV----VSEDSDKMVAKDKQE------FS 60

Query: 61 LKRTIQNGFWTFVDMASGRFLWRNLNASILNKK 94
           +R +QNGFW FVDMASGR+LWRNL     ++K
Sbjct: 61 FRRMVQNGFWVFVDMASGRYLWRNLKEMKTDEK 83

[Close]

BLAST of Cla012130 vs. NCBI nr
Match: gi|659082697|ref|XP_008441985.1| (PREDICTED: uncharacterized protein LOC103485982 [Cucumis melo])

HSP 1 Score: 162.9 bits (411), Expect = 2.9e-37
Identity = 82/103 (79.61%), Postives = 88/103 (85.44%), Query Frame = 1


Query: 1   MCPLRFILVFLSAILAGYIAWRSAS-------SSSSSSSSDIFQATEASDKSPPKNENRS 60
           MCPLRFILVFLSAILAGY AWRSAS       SSSSSSSSDIFQATEA DKS P+NENRS
Sbjct: 1   MCPLRFILVFLSAILAGYFAWRSASSSSSSSSSSSSSSSSDIFQATEAPDKSAPQNENRS 60

Query: 61  VTEEGFGLKRTIQNGFWTFVDMASGRFLWRNLNASILNKKNQV 97
           V E+GFG+KR ++NGFWTFVDMASGRFLWRN+N SILNK  QV
Sbjct: 61  VREDGFGVKRMVENGFWTFVDMASGRFLWRNMNESILNKNKQV 103

[Close]

BLAST of Cla012130 vs. NCBI nr
Match: gi|700198780|gb|KGN53938.1| (hypothetical protein Csa_4G192100 [Cucumis sativus])

HSP 1 Score: 159.8 bits (403), Expect = 2.4e-36
Identity = 80/99 (80.81%), Postives = 86/99 (86.87%), Query Frame = 1


Query: 1   MCPLRFILVFLSAILAGYIAWRSASSSSSSSSSDIFQATEASDKSPPKNENRSVTEEGFG 60
           MCPLRFIL+FLSAILAGY AWRSA  SSSSSSSDIFQATEASDKS P+NENRS TE+  G
Sbjct: 1   MCPLRFILLFLSAILAGYFAWRSA--SSSSSSSDIFQATEASDKSAPENENRSGTEDRLG 60

Query: 61  LKRTIQNGFWTFVDMASGRFLWRNLNASILNKKNQVKED 100
           + R ++ GFWTFVDMASGRFLWRNLN SILNK  QVKED
Sbjct: 61  VNRMVEKGFWTFVDMASGRFLWRNLNGSILNKNKQVKED 97

[Close]

BLAST of Cla012130 vs. NCBI nr
Match: gi|720065809|ref|XP_010276379.1| (PREDICTED: uncharacterized protein LOC104611146 [Nelumbo nucifera])

HSP 1 Score: 96.3 bits (238), Expect = 3.3e-17
Identity = 52/96 (54.17%), Postives = 61/96 (63.54%), Query Frame = 1


Query: 1  MCPLRFILVFLSAILAGYIAWRSASSSSSSSSSDIFQATEASDKSPPKNENRSVTEEGFG 60
          MCPLR ILVFLSA LAGY AWR+  SSSSSSS DI            K  ++   ++ F 
Sbjct: 1  MCPLRIILVFLSATLAGYFAWRTVRSSSSSSS-DIDDMIHGDSSDTEKVSSQG--DQEFN 60

Query: 61 LKRTIQNGFWTFVDMASGRFLWRNLNASILNKKNQV 97
          LKR IQNGFW  VDMASGR+LWRNL      +K ++
Sbjct: 61 LKRAIQNGFWVIVDMASGRYLWRNLRMVNEGEKEKI 93

[Close]

BLAST of Cla012130 vs. NCBI nr
Match: gi|729377450|ref|XP_010549672.1| (PREDICTED: uncharacterized protein LOC104820773 [Tarenaya hassleriana])

HSP 1 Score: 95.9 bits (237), Expect = 4.3e-17
Identity = 46/85 (54.12%), Postives = 56/85 (65.88%), Query Frame = 1


Query: 1  MCPLRFILVFLSAILAGYIAWRSASSSSSSSSSDIFQATEASDKSPPKNENRSVTEEGFG 60
          MCPLRF+LVF SA+LAGY AWR+ SSS  S+   I   ++   K           + GF 
Sbjct: 1  MCPLRFLLVFFSAVLAGYFAWRTVSSSDESAVDAISGESQVEQKD----------KRGFN 60

Query: 61 LKRTIQNGFWTFVDMASGRFLWRNL 86
           KRT++NGFW FVDMASGR+LWRNL
Sbjct: 61 FKRTMENGFWVFVDMASGRYLWRNL 75

[Close]

BLAST of Cla012130 vs. NCBI nr
Match: gi|729424547|ref|XP_010558727.1| (PREDICTED: uncharacterized protein LOC104827276 [Tarenaya hassleriana])

HSP 1 Score: 95.5 bits (236), Expect = 5.6e-17
Identity = 48/86 (55.81%), Postives = 58/86 (67.44%), Query Frame = 1


Query: 1  MCPLRFILVFLSAILAGYIAWRSASSSSSSSSSDIFQATEASDKSPPKNENRSVTEEGFG 60
          MCPLRFILVF SA+LAGY AWR+  SS  S +  I      S  SP + +++     GF 
Sbjct: 1  MCPLRFILVFFSAVLAGYFAWRTVRSSDHSVADSI------SGDSPVEQKDKI----GFN 60

Query: 61 LKRTIQNGFWTFVDMASGRFLWRNLN 87
           KRT++ GFW FVDMASGR+LWRNLN
Sbjct: 61 FKRTVEKGFWVFVDMASGRYLWRNLN 76

The following BLAST results are available for this feature:

BLAST of Cla012130 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWN3_CUCSA	1.7e-36	80.81	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G192100 PE=4 SV=1	[more]
A0A151T4Z5_CAJCA	6.7e-17	53.06	Uncharacterized protein OS=Cajanus cajan GN=KK1_016643 PE=4 SV=1	[more]
G7KPM7_MEDTR	3.3e-16	51.00	Methyltransferase-like protein OS=Medicago truncatula GN=MTR_6g029390 PE=2 SV=1	[more]
B3H764_ARATH	4.3e-16	54.12	Uncharacterized protein OS=Arabidopsis thaliana GN=At5g14602 PE=4 SV=1	[more]
A0A061F3J3_THECC	5.7e-16	49.46	Methyltransferase-related protein, putative OS=Theobroma cacao GN=TCM_026468 PE=...	[more]

BLAST of Cla012130 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659082697\|ref\|XP_008441985.1\|	2.9e-37	79.61	PREDICTED: uncharacterized protein LOC103485982 [Cucumis melo]	[more]
gi\|700198780\|gb\|KGN53938.1\|	2.4e-36	80.81	hypothetical protein Csa_4G192100 [Cucumis sativus]	[more]
gi\|720065809\|ref\|XP_010276379.1\|	3.3e-17	54.17	PREDICTED: uncharacterized protein LOC104611146 [Nelumbo nucifera]	[more]
gi\|729377450\|ref\|XP_010549672.1\|	4.3e-17	54.12	PREDICTED: uncharacterized protein LOC104820773 [Tarenaya hassleriana]	[more]
gi\|729424547\|ref\|XP_010558727.1\|	5.6e-17	55.81	PREDICTED: uncharacterized protein LOC104827276 [Tarenaya hassleriana]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0032259	methylation
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0016740	transferase activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU43782	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla012130	Cla012130.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU43782	WMU43782	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34132	FAMILY NOT NAMED	coord: 2..98 score: 2.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla012130	Cla97C04G071890	Watermelon (97103) v2	wmwmbB291
Cla012130	Csa4G192100	Cucumber (Chinese Long) v2	cuwmB339
Cla012130	MELO3C008804	Melon (DHL92) v3.5.1	mewmB585
Cla012130	ClCG04G005330	Watermelon (Charleston Gray)	wcgwmB255
Cla012130	CSPI04G11230	Wild cucumber (PI 183967)	cpiwmB346
Cla012130	Cucsa.024090	Cucumber (Gy14) v1	cgywmB624
Cla012130	CmaCh07G011650	Cucurbita maxima (Rimu)	cmawmB836
Cla012130	CmoCh07G012130	Cucurbita moschata (Rifu)	cmowmB826
Cla012130	Cp4.1LG19g01910	Cucurbita pepo (Zucchini)	cpewmB486
Cla012130	CsGy4G010790	Cucumber (Gy14) v2	cgybwmB315
Cla012130	MELO3C008804.2	Melon (DHL92) v3.6.1	medwmB573
Cla012130	Carg12606	Silver-seed gourd	carwmB0276
Cla012130	CsaV3_4G013260	Cucumber (Chinese Long) v3	cucwmB356
Cla012130	Bhi03G001839	Wax gourd	wgowmB439

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla012130	Cucurbita pepo (Zucchini)	cpewmB079
Cla012130	Bottle gourd (USVL1VR-Ls)	lsiwmB145
Cla012130	Silver-seed gourd	carwmB0625
Cla012130	Cucurbita maxima (Rimu)	cmawmB640
Cla012130	Cucurbita moschata (Rifu)	cmowmB633