CmaCh07G011650 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh07G011650
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Methyltransferase-like protein
Location	Cma_Chr07 : 6384261 .. 6386017 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTCCTCTCAGATTCATCCTCGTTTTCCTCTCTGCGATTCTAGCCGGATACGTCGCCTGGAGATCCGCTTCTTCTTCTTCTCCGTCTTCGTCTTCGTCGGACCTTTTTCCGGCGGCCGAATCGGAGAAATCGCCGCTGGAAAGTGAGAATCGAAGAGTAGAGGAAGACGGATTTGGATTGAAGAAGATGATTCAGAGAGGGTTCTGGATTTTCGTCGACATGGCGAGCGGGAGATTCCTGTGGAGGAACTTGAATTCGTCGGCTCTCGACAAAGATCACCACGGCGAGAAGGTTGAGAGTAATTAAGAAATTCATTTTGTTCATTCTTTTACTCTCGAGATTTGATTGTGTTGTTGATTCTGGAAATAGTGTTCTTCGATCATCCGCTCTCTGTTCTTGATTGATGAACATAGAAATGTTCATAGTGAAATTCATTCATATGAGAAAACATTAGCTTCTTCAACTATTTAGTATTTATTCTATACCATCCAAAAAATTACATCTTCACATCGTGGTAGCTTATTATAGCATTGAAGAAATTCTTTTATCATAGCTTTGAAAATTACTATAAAATCGGTTTTGACCTCTTTATTTCCGTTAGTTTTGAGTGTGGGGACGAGATGGAGACAGAGAAGGGGCTTCCTAAACCATTGCCATCTAATCCGTCCGATAAGTTCTCGTGGAGTGAGTCGTGAATTATCTATTGTCATGTTAGTTTTGAGTGTGGGGACGGGATGGAGACGAAACAGGGGCTTCCTCTACCATTGCCGTCTAATCTGTCTACTGAGTTCTTGTAGAGTGAGTCGTGAATTAATAACTATTATGACAATTCAGATGAGGCATTGACTTTCTTTTATGAAAAAAGTTGACCTTGCTCGAAAGAACGAAATAAGGAAAAGGTAAAAGTGGCCGAGATTTTAAGGAAAAACGCTTATTTAGCATTTTTGGAAATGCCTTGAGCTGGTGGAGGTGTTAATTTTACAATCTCGATTTGTTTGGAAGTTTACGATATAGAAATATGAACGTATTTAAATAAAATTCCATAAGTTAGTTGGAGTTATTTAGATAATATATTGAATTTAGTAAATGGTTAATTCATAAAATATATATATATTTATTTCTAAATATTAATTAAAATTTATAACTCATTTTATATTTTTAAAAATTACTTTTAAATAGTTTAAATTATTTAAAAAAAATGATTGACAACAAATAATAAAAAAATAATTATGAAATTAAATAAAAATAAAATCAATAATTTTTTTTTTTTTTATAATAGTACAAATTAAGTTGATTGAATTTGTGAGATTATCGAATTCTTTAAACCCTTCTACTTTCATAAACTTTGGATACATTCAAAGGACATGTATCAATAGTTGACTTTAATTATTTTTTTTTAATGAATCGTTGACTTTTTTATTTTATTTCTAAACAAGTTTTTTTTTTAATTCTTTAATTTGATAATGGATGAGACGAAAAGTCAATATTTTAATTCTTTTTTTTTTTTAATGAAAATCTAATTTGAAAAATAGGTTCAATCGGGTTGTAGTCTTTATCTTGATTTTTCTTGTTCGATTAGTTTGATGCCTTGGTCCAACGTGACGATATATATGTATGTATGTATAGGACTCGCTTGGTATTTGTTATAAATGATTTGATTAAACTAACTTAGCTAATTCATAAAATTTCAACTTATTTATAATGGTCATATCCATGCACATAACTTGTTCTACTTTACGTAAGACTACAACTAG

mRNA sequence

ATGTGTCCTCTCAGATTCATCCTCGTTTTCCTCTCTGCGATTCTAGCCGGATACGTCGCCTGGAGATCCGCTTCTTCTTCTTCTCCGTCTTCGTCTTCGTCGGACCTTTTTCCGGCGGCCGAATCGGAGAAATCGCCGCTGGAAAGTGAGAATCGAAGAGTAGAGGAAGACGGATTTGGATTGAAGAAGATGATTCAGAGAGGGTTCTGGATTTTCGTCGACATGGCGAGCGGGAGATTCCTGTGGAGGAACTTGAATTCGTCGGCTCTCGACAAAGATCACCACGGCGAGAAGGTTGAGAACTACAACTAG

Coding sequence (CDS)

ATGTGTCCTCTCAGATTCATCCTCGTTTTCCTCTCTGCGATTCTAGCCGGATACGTCGCCTGGAGATCCGCTTCTTCTTCTTCTCCGTCTTCGTCTTCGTCGGACCTTTTTCCGGCGGCCGAATCGGAGAAATCGCCGCTGGAAAGTGAGAATCGAAGAGTAGAGGAAGACGGATTTGGATTGAAGAAGATGATTCAGAGAGGGTTCTGGATTTTCGTCGACATGGCGAGCGGGAGATTCCTGTGGAGGAACTTGAATTCGTCGGCTCTCGACAAAGATCACCACGGCGAGAAGGTTGAGAACTACAACTAG

Protein sequence

MCPLRFILVFLSAILAGYVAWRSASSSSPSSSSSDLFPAAESEKSPLESENRRVEEDGFGLKKMIQRGFWIFVDMASGRFLWRNLNSSALDKDHHGEKVENYN

Homology

[Close]

BLAST of CmaCh07G011650 vs. TrEMBL
Match: A0A0A0KWN3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G192100 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 2.0e-24
Identity = 65/94 (69.15%), Postives = 76/94 (80.85%), Query Frame = 1


Query: 1  MCPLRFILVFLSAILAGYVAWRSASSSSPSSSSSDLFPAAE-SEKSPLESENRRVEEDGF 60
          MCPLRFIL+FLSAILAGY AWRSASSSS   SSSD+F A E S+KS  E+ENR   ED  
Sbjct: 1  MCPLRFILLFLSAILAGYFAWRSASSSS---SSSDIFQATEASDKSAPENENRSGTEDRL 60

Query: 61 GLKKMIQRGFWIFVDMASGRFLWRNLNSSALDKD 94
          G+ +M+++GFW FVDMASGRFLWRNLN S L+K+
Sbjct: 61 GVNRMVEKGFWTFVDMASGRFLWRNLNGSILNKN 91

[Close]

BLAST of CmaCh07G011650 vs. TrEMBL
Match: G7KPM7_MEDTR (Methyltransferase-like protein OS=Medicago truncatula GN=MTR_6g029390 PE=2 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 4.4e-16
Identity = 52/98 (53.06%), Postives = 63/98 (64.29%), Query Frame = 1


Query: 1  MCPLRFILVFLSAILAGYVAWRSASSSSPSSSSSDLFPAAESEKSPLESENRRVEEDGFG 60
          MCPLRFILVF SA+LAGY AWR+  SS     + D   + E EKSP + E+       F 
Sbjct: 1  MCPLRFILVFFSAVLAGYFAWRTVRSSPNIDLACD--DSIEEEKSPFKKED-------FD 60

Query: 61 LKKMIQRGFWIFVDMASGRFLWRNLNSSALDKDHHGEK 99
           KKMIQ GFW+FVDMASGR+LWRNL  +  D++    K
Sbjct: 61 FKKMIQNGFWVFVDMASGRYLWRNLRQTNKDEELKSSK 89

[Close]

BLAST of CmaCh07G011650 vs. TrEMBL
Match: A0A151T4Z5_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_016643 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.2e-15
Identity = 48/91 (52.75%), Postives = 62/91 (68.13%), Query Frame = 1


Query: 1  MCPLRFILVFLSAILAGYVAWRSASSSSPSSSSSDLFPAAESEKSPLESENRRVEEDGFG 60
          MCPLRFILVF SA+LAGY AW++  SS     +S+ + A E +KSP        +++ F 
Sbjct: 1  MCPLRFILVFFSAVLAGYFAWKTVRSSPEMELNSEDYSAQE-DKSP--------KKENFD 60

Query: 61 LKKMIQRGFWIFVDMASGRFLWRNLNSSALD 92
           KKM++ GFW+FVDMASGR+LWRNL  S  D
Sbjct: 61 FKKMVENGFWVFVDMASGRYLWRNLKPSNKD 82

[Close]

BLAST of CmaCh07G011650 vs. TrEMBL
Match: A0A0S3TAG9_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.11G130900 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.1e-14
Identity = 45/93 (48.39%), Postives = 57/93 (61.29%), Query Frame = 1


Query: 1  MCPLRFILVFLSAILAGYVAWRSASSSSPSSSSSDLFPAAESEKSPLESENRRVEEDGFG 60
          MCPLRFILVF SA+LAGY AWR+  S           P  E        E+R  +++ F 
Sbjct: 1  MCPLRFILVFFSAVLAGYFAWRTVRSD----------PKIEVFSEDSAEEDRSSKKEDFD 60

Query: 61 LKKMIQRGFWIFVDMASGRFLWRNLNSSALDKD 94
           KKMI+ GFW+F+DMASGR+LWRNL  +  D +
Sbjct: 61 FKKMIENGFWVFIDMASGRYLWRNLKPTKKDAE 83

[Close]

BLAST of CmaCh07G011650 vs. TrEMBL
Match: A0A0L9VKU8_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan10g149000 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.1e-14
Identity = 45/93 (48.39%), Postives = 57/93 (61.29%), Query Frame = 1


Query: 1  MCPLRFILVFLSAILAGYVAWRSASSSSPSSSSSDLFPAAESEKSPLESENRRVEEDGFG 60
          MCPLRFILVF SA+LAGY AWR+  S           P  E        E+R  +++ F 
Sbjct: 1  MCPLRFILVFFSAVLAGYFAWRTVRSD----------PKIEVFSEDSAEEDRSSKKEDFD 60

Query: 61 LKKMIQRGFWIFVDMASGRFLWRNLNSSALDKD 94
           KKMI+ GFW+F+DMASGR+LWRNL  +  D +
Sbjct: 61 FKKMIENGFWVFIDMASGRYLWRNLKPTKKDAE 83

[Close]

BLAST of CmaCh07G011650 vs. TAIR10
Match: AT5G14602.1 (AT5G14602.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 77.4 bits (189), Expect = 5.7e-15
Identity = 42/85 (49.41%), Postives = 52/85 (61.18%), Query Frame = 1


Query: 1  MCPLRFILVFLSAILAGYVAWRSASSSSPSSSSSDLFPAAESEKSPLESENRRVEEDGFG 60
          MCPLRF+LVF SA+LAGY+AWR+  +S+P   S +L  A   EK             G  
Sbjct: 1  MCPLRFVLVFFSAVLAGYIAWRTV-NSTPELFSDELLQAEAKEK------------QGLD 60

Query: 61 LKKMIQRGFWIFVDMASGRFLWRNL 86
           K+ +  G W FVDMASGR+LWRNL
Sbjct: 61 FKRKMDNGLWTFVDMASGRYLWRNL 72

[Close]

BLAST of CmaCh07G011650 vs. TAIR10
Match: AT5G18150.1 (AT5G18150.1 Methyltransferase-related protein)

HSP 1 Score: 77.4 bits (189), Expect = 5.7e-15
Identity = 43/85 (50.59%), Postives = 54/85 (63.53%), Query Frame = 1


Query: 1  MCPLRFILVFLSAILAGYVAWRSASSSSPSSSSSDLFPAAESEKSPLESENRRVEEDGFG 60
          MCP+RF+LVF SA+LAGY AW++ SSS    S  +L     +EK  L             
Sbjct: 1  MCPMRFLLVFFSAVLAGYFAWKTVSSSPEFDSPDEL-----NEKQELN------------ 60

Query: 61 LKKMIQRGFWIFVDMASGRFLWRNL 86
          LKK ++ GFW+FVDMASGR+LWRNL
Sbjct: 61 LKKKMENGFWVFVDMASGRYLWRNL 68

[Close]

BLAST of CmaCh07G011650 vs. TAIR10
Match: AT5G58375.1 (AT5G58375.1 Methyltransferase-related protein)

HSP 1 Score: 55.8 bits (133), Expect = 1.8e-08
Identity = 40/89 (44.94%), Postives = 49/89 (55.06%), Query Frame = 1


Query: 1  MCPLRFILVFLSAILAGYVAWRSASSSSPSSSSSDLFPAAESEKSPLESENRRVEEDGFG 60
          MCPLR IL+FLSA LAG+   +  +S+S      D F  AE       S   +V   G  
Sbjct: 1  MCPLRLILIFLSATLAGFFVLQKLNSTS-DDPLDDSFTDAEHADDDSVSGFSKV---GMA 60

Query: 61 LKKMIQRGFWIFVDMASGRFLWRNLNSSA 90
          +K     GFW  VDMASGR+LW NL S+A
Sbjct: 61 MKS----GFWTCVDMASGRYLWNNLCSNA 81

[Close]

BLAST of CmaCh07G011650 vs. NCBI nr
Match: gi|659082697|ref|XP_008441985.1| (PREDICTED: uncharacterized protein LOC103485982 [Cucumis melo])

HSP 1 Score: 127.9 bits (320), Expect = 1.0e-26
Identity = 69/100 (69.00%), Postives = 81/100 (81.00%), Query Frame = 1


Query: 1   MCPLRFILVFLSAILAGYVAWRSASSSSPSSSSS------DLFPAAES-EKSPLESENRR 60
           MCPLRFILVFLSAILAGY AWRSASSSS SSSSS      D+F A E+ +KS  ++ENR 
Sbjct: 1   MCPLRFILVFLSAILAGYFAWRSASSSSSSSSSSSSSSSSDIFQATEAPDKSAPQNENRS 60

Query: 61  VEEDGFGLKKMIQRGFWIFVDMASGRFLWRNLNSSALDKD 94
           V EDGFG+K+M++ GFW FVDMASGRFLWRN+N S L+K+
Sbjct: 61  VREDGFGVKRMVENGFWTFVDMASGRFLWRNMNESILNKN 100

[Close]

BLAST of CmaCh07G011650 vs. NCBI nr
Match: gi|700198780|gb|KGN53938.1| (hypothetical protein Csa_4G192100 [Cucumis sativus])

HSP 1 Score: 119.8 bits (299), Expect = 2.8e-24
Identity = 65/94 (69.15%), Postives = 76/94 (80.85%), Query Frame = 1


Query: 1  MCPLRFILVFLSAILAGYVAWRSASSSSPSSSSSDLFPAAE-SEKSPLESENRRVEEDGF 60
          MCPLRFIL+FLSAILAGY AWRSASSSS   SSSD+F A E S+KS  E+ENR   ED  
Sbjct: 1  MCPLRFILLFLSAILAGYFAWRSASSSS---SSSDIFQATEASDKSAPENENRSGTEDRL 60

Query: 61 GLKKMIQRGFWIFVDMASGRFLWRNLNSSALDKD 94
          G+ +M+++GFW FVDMASGRFLWRNLN S L+K+
Sbjct: 61 GVNRMVEKGFWTFVDMASGRFLWRNLNGSILNKN 91

[Close]

BLAST of CmaCh07G011650 vs. NCBI nr
Match: gi|502092074|ref|XP_004489706.1| (PREDICTED: uncharacterized protein LOC101509787 [Cicer arietinum])

HSP 1 Score: 93.2 bits (230), Expect = 2.8e-16
Identity = 52/93 (55.91%), Postives = 62/93 (66.67%), Query Frame = 1


Query: 1  MCPLRFILVFLSAILAGYVAWRSASSSSPSSSSSDLFPAAESEKSPLESENRRVEEDGFG 60
          MCPLRFILVF SA+LAGY AWR+ +SS      SD   + E EKS  + EN       F 
Sbjct: 1  MCPLRFILVFFSAVLAGYFAWRTVNSSPKIELVSD--DSVEDEKSSFKKEN-------FD 60

Query: 61 LKKMIQRGFWIFVDMASGRFLWRNLNSSALDKD 94
           KKMIQ GFW+FVDMASGR+LWRNL  +  D++
Sbjct: 61 FKKMIQNGFWVFVDMASGRYLWRNLRQTNKDEE 84

[Close]

BLAST of CmaCh07G011650 vs. NCBI nr
Match: gi|357497355|ref|XP_003618966.1| (methyltransferase-like protein [Medicago truncatula])

HSP 1 Score: 92.0 bits (227), Expect = 6.3e-16
Identity = 52/98 (53.06%), Postives = 63/98 (64.29%), Query Frame = 1


Query: 1  MCPLRFILVFLSAILAGYVAWRSASSSSPSSSSSDLFPAAESEKSPLESENRRVEEDGFG 60
          MCPLRFILVF SA+LAGY AWR+  SS     + D   + E EKSP + E+       F 
Sbjct: 1  MCPLRFILVFFSAVLAGYFAWRTVRSSPNIDLACD--DSIEEEKSPFKKED-------FD 60

Query: 61 LKKMIQRGFWIFVDMASGRFLWRNLNSSALDKDHHGEK 99
           KKMIQ GFW+FVDMASGR+LWRNL  +  D++    K
Sbjct: 61 FKKMIQNGFWVFVDMASGRYLWRNLRQTNKDEELKSSK 89

[Close]

BLAST of CmaCh07G011650 vs. NCBI nr
Match: gi|1012350929|gb|KYP62118.1| (hypothetical protein KK1_016643 [Cajanus cajan])

HSP 1 Score: 89.7 bits (221), Expect = 3.1e-15
Identity = 48/91 (52.75%), Postives = 62/91 (68.13%), Query Frame = 1


Query: 1  MCPLRFILVFLSAILAGYVAWRSASSSSPSSSSSDLFPAAESEKSPLESENRRVEEDGFG 60
          MCPLRFILVF SA+LAGY AW++  SS     +S+ + A E +KSP        +++ F 
Sbjct: 1  MCPLRFILVFFSAVLAGYFAWKTVRSSPEMELNSEDYSAQE-DKSP--------KKENFD 60

Query: 61 LKKMIQRGFWIFVDMASGRFLWRNLNSSALD 92
           KKM++ GFW+FVDMASGR+LWRNL  S  D
Sbjct: 61 FKKMVENGFWVFVDMASGRYLWRNLKPSNKD 82

The following BLAST results are available for this feature:

BLAST of CmaCh07G011650 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh07G011650 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWN3_CUCSA	2.0e-24	69.15	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G192100 PE=4 SV=1	[more]
G7KPM7_MEDTR	4.4e-16	53.06	Methyltransferase-like protein OS=Medicago truncatula GN=MTR_6g029390 PE=2 SV=1	[more]
A0A151T4Z5_CAJCA	2.2e-15	52.75	Uncharacterized protein OS=Cajanus cajan GN=KK1_016643 PE=4 SV=1	[more]
A0A0S3TAG9_PHAAN	1.1e-14	48.39	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.11G130900 PE=...	[more]
A0A0L9VKU8_PHAAN	1.1e-14	48.39	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan10g149000 PE=4 SV=1	[more]

BLAST of CmaCh07G011650 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G14602.1	5.7e-15	49.41	FUNCTIONS IN: molecular_function unknown	[more]
AT5G18150.1	5.7e-15	50.59	Methyltransferase-related protein	[more]
AT5G58375.1	1.8e-08	44.94	Methyltransferase-related protein	[more]

BLAST of CmaCh07G011650 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659082697\|ref\|XP_008441985.1\|	1.0e-26	69.00	PREDICTED: uncharacterized protein LOC103485982 [Cucumis melo]	[more]
gi\|700198780\|gb\|KGN53938.1\|	2.8e-24	69.15	hypothetical protein Csa_4G192100 [Cucumis sativus]	[more]
gi\|502092074\|ref\|XP_004489706.1\|	2.8e-16	55.91	PREDICTED: uncharacterized protein LOC101509787 [Cicer arietinum]	[more]
gi\|357497355\|ref\|XP_003618966.1\|	6.3e-16	53.06	methyltransferase-like protein [Medicago truncatula]	[more]
gi\|1012350929\|gb\|KYP62118.1\|	3.1e-15	52.75	hypothetical protein KK1_016643 [Cajanus cajan]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh07G011650.1	CmaCh07G011650.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34132	FAMILY NOT NAMED	coord: 2..96 score: 3.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh07G011650	Cucsa.024090	Cucumber (Gy14) v1	cgycmaB0950
CmaCh07G011650	Cla012130	Watermelon (97103) v1	cmawmB836
CmaCh07G011650	Csa4G192100	Cucumber (Chinese Long) v2	cmacuB860
CmaCh07G011650	MELO3C008804	Melon (DHL92) v3.5.1	cmameB801
CmaCh07G011650	ClCG04G005330	Watermelon (Charleston Gray)	cmawcgB769
CmaCh07G011650	CSPI04G11230	Wild cucumber (PI 183967)	cmacpiB877
CmaCh07G011650	CmoCh07G012130	Cucurbita moschata (Rifu)	cmacmoB875
CmaCh07G011650	Cp4.1LG19g01910	Cucurbita pepo (Zucchini)	cmacpeB880
CmaCh07G011650	MELO3C008804.2	Melon (DHL92) v3.6.1	cmamedB899
CmaCh07G011650	CsaV3_4G013260	Cucumber (Chinese Long) v3	cmacucB1017
CmaCh07G011650	Cla97C04G071890	Watermelon (97103) v2	cmawmbB898
CmaCh07G011650	Bhi03G001839	Wax gourd	cmawgoB1071
CmaCh07G011650	CsGy4G010790	Cucumber (Gy14) v2	cgybcmaB563
CmaCh07G011650	Carg12606	Silver-seed gourd	carcmaB0398

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh07G011650	Cucurbita pepo (Zucchini)	cmacpeB867
CmaCh07G011650	Bottle gourd (USVL1VR-Ls)	cmalsiB791
CmaCh07G011650	Silver-seed gourd	carcmaB0888
CmaCh07G011650	Cucurbita maxima (Rimu)	cmacmaB524
CmaCh07G011650	Cucurbita moschata (Rifu)	cmacmoB859