MELO3C008589 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C008589
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	DNA-directed RNA polymerase II subunit, putative
Location	chr5 : 13904985 .. 13905956 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGGGAGTTCGTACCAGCGATTTCCAAAGGTGAAAATCCGAGAACTCCGAGATGATTACGCCAAATTCGAGCTCCGGGACACCGATGCCAGCATGGCCAACGCTCTCCGTCGCGTCATGATTGCCGAGGTTCCCACCATTGCCATTGATTTGGTAGAAATTGAAGTGAACTCCTCTGTTCTCAACGACGAGTTCATTGCCCATCGCCTCGGTCTCATTCCCCTCACCAGCGAGCGTGCCATGTCCATGCGCTTCTCTCGCGACTGTGATGCTTGCGATGGTGATGGCCAGTGTGAGTTTTGCTCTGTCGAGTTTCACCTTCGCGCCAAGTGCCACTCCGACCAAACCCTAGACGTCACCAGTAAGGATCTCTATAGTTCTGATCACACTGTTGTCCCCGTTGATTTCTCCGACTCTGCTGCAGCTACTGGTGAAGCGCTGGATACCAAGTATGTCCTCTTCTTACTCTCTTCTCCCTCAGACCTGTTTATTCTTGCCATTTCATCTGATTGTTGCATTAGGTTGGTACGTGATGTTTAATCTGTAACTCCTTTTTCTGTCTAGCTTACAAATGGAGGTTAAGACTTAGGAGTTTACACATCTTAGAGATAGTCCATTTCTACAAGTCAGAAGCTCGCCCTCCAAAGTTCTAATTTATTCTTTCTATGCAACATTGCAGCATGTTTGTTATGAGAAAAATATCATTTTAATTTGGTGTCATTGTGGTTCATTAAGTAATTGCTCCCTAATTTTGAGCTGCTTTGTTATGACTGTAGAGGAATAATCATTGTGAAGCTACGTCGCGGTCAAGAGTTGAGGCTTAGAGCCATAGCTAGGAAGGGCATTGGTAAAGATCACGCAAAATGGTCGCCTGCAGCAACTGTGACATTCATGTATGAGCCGAGCATTCACATCAATGAAGACCTAATGGAAACATTAACTCTAGAGGAAAAAAAGAACTTGGGTTGA

mRNA sequence

ATGGAAGGGAGTTCGTACCAGCGATTTCCAAAGGTGAAAATCCGAGAACTCCGAGATGATTACGCCAAATTCGAGCTCCGGGACACCGATGCCAGCATGGCCAACGCTCTCCGTCGCGTCATGATTGCCGAGGTTCCCACCATTGCCATTGATTTGGTAGAAATTGAAGTGAACTCCTCTGTTCTCAACGACGAGTTCATTGCCCATCGCCTCGGTCTCATTCCCCTCACCAGCGAGCGTGCCATGTCCATGCGCTTCTCTCGCGACTGTGATGCTTGCGATGGTGATGGCCAGTGTGAGTTTTGCTCTGTCGAGTTTCACCTTCGCGCCAAGTGCCACTCCGACCAAACCCTAGACGTCACCAGTAAGGATCTCTATAGTTCTGATCACACTGTTGTCCCCGTTGATTTCTCCGACTCTGCTGCAGCTACTGGTGAAGCGCTGGATACCAAAGGAATAATCATTGTGAAGCTACGTCGCGGTCAAGAGTTGAGGCTTAGAGCCATAGCTAGGAAGGGCATTGGTAAAGATCACGCAAAATGGTCGCCTGCAGCAACTGTGACATTCATGTATGAGCCGAGCATTCACATCAATGAAGACCTAATGGAAACATTAACTCTAGAGGAAAAAAAGAACTTGGGTTGA

Coding sequence (CDS)

ATGGAAGGGAGTTCGTACCAGCGATTTCCAAAGGTGAAAATCCGAGAACTCCGAGATGATTACGCCAAATTCGAGCTCCGGGACACCGATGCCAGCATGGCCAACGCTCTCCGTCGCGTCATGATTGCCGAGGTTCCCACCATTGCCATTGATTTGGTAGAAATTGAAGTGAACTCCTCTGTTCTCAACGACGAGTTCATTGCCCATCGCCTCGGTCTCATTCCCCTCACCAGCGAGCGTGCCATGTCCATGCGCTTCTCTCGCGACTGTGATGCTTGCGATGGTGATGGCCAGTGTGAGTTTTGCTCTGTCGAGTTTCACCTTCGCGCCAAGTGCCACTCCGACCAAACCCTAGACGTCACCAGTAAGGATCTCTATAGTTCTGATCACACTGTTGTCCCCGTTGATTTCTCCGACTCTGCTGCAGCTACTGGTGAAGCGCTGGATACCAAAGGAATAATCATTGTGAAGCTACGTCGCGGTCAAGAGTTGAGGCTTAGAGCCATAGCTAGGAAGGGCATTGGTAAAGATCACGCAAAATGGTCGCCTGCAGCAACTGTGACATTCATGTATGAGCCGAGCATTCACATCAATGAAGACCTAATGGAAACATTAACTCTAGAGGAAAAAAAGAACTTGGGTTGA

Protein sequence

MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPSIHINEDLMETLTLEEKKNLG*

Homology

[Close]

BLAST of MELO3C008589 vs. Swiss-Prot
Match: NRPB3_ARATH (DNA-directed RNA polymerases II, IV and V subunit 3 OS=Arabidopsis thaliana GN=NRPB3 PE=1 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 4.9e-95
Identity = 173/213 (81.22%), Postives = 195/213 (91.55%), Query Frame = 1


Query: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           M+G++YQRFPK+KIREL+DDYAKFELR+TD SMANALRRVMI+EVPT+AIDLVEIEVNSS
Sbjct: 1   MDGATYQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEF L +KC +DQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           TS+DLYS+D TV PVDF+  ++ + ++ + KGIIIVKLRRGQEL+LRAIARKGIGKDHAK
Sbjct: 121 TSRDLYSADPTVTPVDFTIDSSVS-DSSEHKGIIIVKLRRGQELKLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKKNL 214
           WSPAATVTFMYEP I INED+M+TL+ EEK +L
Sbjct: 181 WSPAATVTFMYEPDIIINEDMMDTLSDEEKIDL 212

[Close]

BLAST of MELO3C008589 vs. Swiss-Prot
Match: RPD3B_ARATH (DNA-directed RNA polymerases IV and V subunit 3B OS=Arabidopsis thaliana GN=NRPD3B PE=1 SV=2)

HSP 1 Score: 319.3 bits (817), Expect = 3.2e-86
Identity = 161/213 (75.59%), Postives = 185/213 (86.85%), Query Frame = 1


Query: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           M+G +YQRFP VKIREL+DDYAKFELR+TD SMANALRRVMI+EVPT+AI LV+IEVNSS
Sbjct: 1   MDGVTYQRFPTVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIA RL LIPLTSERAMSMRF +DC+ C+GD  CEFCSVEF L AKC +DQTLDV
Sbjct: 61  VLNDEFIAQRLSLIPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKCVTDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           TS+DLYS+D TV PVDF+ S ++T ++ + KGIII KLRRGQEL+L+A+ARKGIGKDHAK
Sbjct: 121 TSRDLYSADPTVTPVDFT-SNSSTSDSSEHKGIIIAKLRRGQELKLKALARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKKNL 214
           WSPAATVT+MYEP I INE++M TLT EEK +L
Sbjct: 181 WSPAATVTYMYEPDIIINEEMMNTLTDEEKIDL 212

[Close]

BLAST of MELO3C008589 vs. Swiss-Prot
Match: RPB3_DICDI (DNA-directed RNA polymerase II subunit rpb3 OS=Dictyostelium discoideum GN=polr2c PE=3 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 3.1e-49
Identity = 105/208 (50.48%), Postives = 142/208 (68.27%), Query Frame = 1


Query: 4   SSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLN 63
           S   R P+++I E+++D   F L +TD S+ANALRRVMIAEVPT+ IDLVE E N+SVL 
Sbjct: 6   SQLTRQPELEILEIKNDSIIFILSNTDISVANALRRVMIAEVPTMCIDLVEFESNNSVLC 65

Query: 64  DEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSK 123
           DEFIAHRLGLIPL S+      ++RDC   D   +C+ CSVE  L  KC  ++  DVTS 
Sbjct: 66  DEFIAHRLGLIPLVSDNIDKFCYTRDCSCSD---RCDQCSVELRLNVKCTENRPRDVTSS 125

Query: 124 DLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSP 183
           DL S +  V+PV  S   ++  E    + I IVKLRRGQE++LRAIA+KG+GK+HAKWSP
Sbjct: 126 DLLSQNSAVIPVS-SQVTSSNSE----QEIPIVKLRRGQEIKLRAIAKKGVGKEHAKWSP 185

Query: 184 AATVTFMYEPSIHINEDLMETLTLEEKK 212
           +   T+ ++P I +N++ ++ LT ++K+
Sbjct: 186 SCVATYQFQPIIVLNQNRIDELTDQQKE 205

[Close]

BLAST of MELO3C008589 vs. Swiss-Prot
Match: RPB3_BOVIN (DNA-directed RNA polymerase II subunit RPB3 OS=Bos taurus GN=POLR2C PE=1 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 2.2e-47
Identity = 100/189 (52.91%), Postives = 130/189 (68.78%), Query Frame = 1


Query: 6   YQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
           Y   P V+I EL D+  KF + +TD ++AN++RRV IAEVP IAID V+I+ NSSVL+DE
Sbjct: 3   YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62

Query: 66  FIAHRLGLIPLTSERAMS-MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 125
           FIAHRLGLIPLTS+  +  +++SRDC     +  C  CSVEF L  +C+ DQT  VTS+D
Sbjct: 63  FIAHRLGLIPLTSDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 122

Query: 126 LYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 185
           L S+   V+PV   +      + ++   I+IVKLR+GQELRLRA A+KG GK+HAKW+P 
Sbjct: 123 LISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 182

Query: 186 ATVTFMYEP 194
           A V F Y+P
Sbjct: 183 AGVAFEYDP 188

[Close]

BLAST of MELO3C008589 vs. Swiss-Prot
Match: RPB3_HUMAN (DNA-directed RNA polymerase II subunit RPB3 OS=Homo sapiens GN=POLR2C PE=1 SV=2)

HSP 1 Score: 188.0 bits (476), Expect = 1.1e-46
Identity = 99/189 (52.38%), Postives = 129/189 (68.25%), Query Frame = 1


Query: 6   YQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
           Y   P V+I EL D+  KF + +TD ++AN++RRV IAEVP IAID V+I+ NSSVL+DE
Sbjct: 3   YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62

Query: 66  FIAHRLGLIPLTSERAMS-MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 125
           FIAHRLGLIPL S+  +  +++SRDC     +  C  CSVEF L  +C+ DQT  VTS+D
Sbjct: 63  FIAHRLGLIPLISDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 122

Query: 126 LYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 185
           L S+   V+PV   +      + ++   I+IVKLR+GQELRLRA A+KG GK+HAKW+P 
Sbjct: 123 LISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 182

Query: 186 ATVTFMYEP 194
           A V F Y+P
Sbjct: 183 AGVAFEYDP 188

[Close]

BLAST of MELO3C008589 vs. TrEMBL
Match: A0A0A0LHS1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G093850 PE=4 SV=1)

HSP 1 Score: 418.7 bits (1075), Expect = 4.3e-114
Identity = 210/211 (99.53%), Postives = 211/211 (100.00%), Query Frame = 1


Query: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKK 212
           WSPAATVTFMYEPSIHINEDLMETLTLEEK+
Sbjct: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKR 211

[Close]

BLAST of MELO3C008589 vs. TrEMBL
Match: A0A061E7U0_THECC (DNA-directed RNA polymerase family protein OS=Theobroma cacao GN=TCM_007121 PE=4 SV=1)

HSP 1 Score: 384.0 bits (985), Expect = 1.2e-103
Identity = 193/212 (91.04%), Postives = 203/212 (95.75%), Query Frame = 1


Query: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           MEG SYQRFPKVKIREL+DDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGVSYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC +DQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           TSKDLYSSDHTVVPVDF+DSA    ++ + +GIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 TSKDLYSSDHTVVPVDFTDSAGY--DSSEQRGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKKN 213
           WSPAATVTFMYEP IHINED+METLTLEEK++
Sbjct: 181 WSPAATVTFMYEPEIHINEDMMETLTLEEKQS 210

[Close]

BLAST of MELO3C008589 vs. TrEMBL
Match: A0A0D2V5K4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G149200 PE=4 SV=1)

HSP 1 Score: 381.7 bits (979), Expect = 5.8e-103
Identity = 191/212 (90.09%), Postives = 203/212 (95.75%), Query Frame = 1


Query: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           MEG+SYQRFP+VKIREL+DDYAKFEL DTDASMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGASYQRFPRVKIRELKDDYAKFELHDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTS+RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC SDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSQRAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCISDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           TSKDLYSSDHTVVPVDF+DSA    E+ + +GIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 TSKDLYSSDHTVVPVDFTDSAGY--ESSEQRGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKKN 213
           WSPAATVTFMYEP IHINED+M+TLTLEEK++
Sbjct: 181 WSPAATVTFMYEPEIHINEDMMDTLTLEEKQS 210

[Close]

BLAST of MELO3C008589 vs. TrEMBL
Match: A0A0D2SZ13_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G023500 PE=4 SV=1)

HSP 1 Score: 381.3 bits (978), Expect = 7.6e-103
Identity = 192/210 (91.43%), Postives = 201/210 (95.71%), Query Frame = 1


Query: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           MEG SYQRFPKVKIREL+DDYAKFELRDTDASMANALRRVMI+EVPTIAIDLVEIEVNSS
Sbjct: 1   MEGISYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMISEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC SDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCISDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           TSKDLYSSDHTVVPVDF+D+A    ++ + +GIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 TSKDLYSSDHTVVPVDFTDNAGY--DSTEPRGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEK 211
           WSPAATVTFMYEP IHINEDLME+LTLEEK
Sbjct: 181 WSPAATVTFMYEPEIHINEDLMESLTLEEK 208

[Close]

BLAST of MELO3C008589 vs. TrEMBL
Match: A0A0B0MXX2_GOSAR (DNA-directed RNA polymerase II subunit RPB3-A-like protein OS=Gossypium arboreum GN=F383_29872 PE=4 SV=1)

HSP 1 Score: 381.3 bits (978), Expect = 7.6e-103
Identity = 192/210 (91.43%), Postives = 201/210 (95.71%), Query Frame = 1


Query: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           MEG SYQRFPKVKIREL+DDYAKFELRDTDASMANALRRVMI+EVPTIAIDLVEIEVNSS
Sbjct: 1   MEGISYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMISEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC SDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCISDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           TSKDLYSSDHTVVPVDF+D+A    ++ + +GIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 TSKDLYSSDHTVVPVDFTDNAGY--DSTEPRGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEK 211
           WSPAATVTFMYEP IHINEDLME+LTLEEK
Sbjct: 181 WSPAATVTFMYEPEIHINEDLMESLTLEEK 208

[Close]

BLAST of MELO3C008589 vs. TAIR10
Match: AT2G15430.1 (AT2G15430.1 DNA-directed RNA polymerase family protein)

HSP 1 Score: 348.6 bits (893), Expect = 2.8e-96
Identity = 173/213 (81.22%), Postives = 195/213 (91.55%), Query Frame = 1


Query: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           M+G++YQRFPK+KIREL+DDYAKFELR+TD SMANALRRVMI+EVPT+AIDLVEIEVNSS
Sbjct: 1   MDGATYQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEF L +KC +DQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           TS+DLYS+D TV PVDF+  ++ + ++ + KGIIIVKLRRGQEL+LRAIARKGIGKDHAK
Sbjct: 121 TSRDLYSADPTVTPVDFTIDSSVS-DSSEHKGIIIVKLRRGQELKLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKKNL 214
           WSPAATVTFMYEP I INED+M+TL+ EEK +L
Sbjct: 181 WSPAATVTFMYEPDIIINEDMMDTLSDEEKIDL 212

[Close]

BLAST of MELO3C008589 vs. TAIR10
Match: AT2G15400.1 (AT2G15400.1 DNA-directed RNA polymerase family protein)

HSP 1 Score: 319.3 bits (817), Expect = 1.8e-87
Identity = 161/213 (75.59%), Postives = 185/213 (86.85%), Query Frame = 1


Query: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           M+G +YQRFP VKIREL+DDYAKFELR+TD SMANALRRVMI+EVPT+AI LV+IEVNSS
Sbjct: 1   MDGVTYQRFPTVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIA RL LIPLTSERAMSMRF +DC+ C+GD  CEFCSVEF L AKC +DQTLDV
Sbjct: 61  VLNDEFIAQRLSLIPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKCVTDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           TS+DLYS+D TV PVDF+ S ++T ++ + KGIII KLRRGQEL+L+A+ARKGIGKDHAK
Sbjct: 121 TSRDLYSADPTVTPVDFT-SNSSTSDSSEHKGIIIAKLRRGQELKLKALARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKKNL 214
           WSPAATVT+MYEP I INE++M TLT EEK +L
Sbjct: 181 WSPAATVTYMYEPDIIINEEMMNTLTDEEKIDL 212

[Close]

BLAST of MELO3C008589 vs. TAIR10
Match: AT1G60850.2 (AT1G60850.2 DNA-directed RNA polymerase family protein)

HSP 1 Score: 104.0 bits (258), Expect = 1.2e-22
Identity = 77/224 (34.38%), Postives = 111/224 (49.55%), Query Frame = 1


Query: 3   GSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVL 62
           G+ Y  F KV +  L     +F++   DA+ ANA RR++IAEVP++AI+ V I  N+SV+
Sbjct: 68  GNFYDNF-KVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSVI 127

Query: 63  NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQ-TLDVT 122
            DE +AHR+GLIP+ ++  +    S      + D   E  ++ F L  KC  ++  L V 
Sbjct: 128 IDEVLAHRMGLIPIAADPRLFEYLS------EHDQANEKNTIVFKLHVKCPKNRPRLKVL 187

Query: 123 SKDL-----------YSSDHTVVP---VDFSDSAAATGEALDTK------GIIIVKLRRG 182
           + DL            S + T  P     FS S  +  E  +         I+I KL  G
Sbjct: 188 TSDLKWLPNGSELLRESENKTSKPKTYTSFSCSQDSLPEFANNPITPCDLDILIAKLAPG 247

Query: 183 QELRLRAIARKGIGKDHAKWSPAATVTFMYEPSIHINEDLMETL 206
           QE+ L A A KGIGK HAKWSP  T  +   P + +  ++ + L
Sbjct: 248 QEIELEAHAVKGIGKTHAKWSPVGTAWYRMHPEVVLRGEVEDEL 284

[Close]

BLAST of MELO3C008589 vs. TAIR10
Match: AT1G60620.1 (AT1G60620.1 RNA polymerase I subunit 43)

HSP 1 Score: 98.6 bits (244), Expect = 5.0e-21
Identity = 70/206 (33.98%), Postives = 100/206 (48.54%), Query Frame = 1


Query: 11  KVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
           KV +  L +    F++    A +ANA RR+++AE+P++AI+ V +  N+SV+ DE +AHR
Sbjct: 82  KVDVISLTETDMVFDMIGVHAGIANAFRRILLAELPSMAIEKVYVANNTSVIQDEVLAHR 141

Query: 71  LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC-HSDQTLDVTSKDL---- 130
           LGLIP+ ++  +    S      + D   E  ++ F L  KC   D    V + +L    
Sbjct: 142 LGLIPIAADPRLFEYLS------ENDQPNEKNTIVFKLHVKCLKGDPRRKVLTSELKWLP 201

Query: 131 -------YSSDHTVVP---VDFSDSAAATGEALDT------KGIIIVKLRRGQELRLRAI 190
                   S   T  P     F+ S  +  E  +       K I+I KL  GQE+ L A 
Sbjct: 202 NGSELIKESGGSTTTPKTYTSFNHSQDSFPEFAENPIRPTLKDILIAKLGPGQEIELEAH 261

Query: 191 ARKGIGKDHAKWSPAATVTFMYEPSI 196
           A KGIGK HAKWSP AT  +   P +
Sbjct: 262 AVKGIGKTHAKWSPVATAWYRMLPEV 281

[Close]

BLAST of MELO3C008589 vs. NCBI nr
Match: gi|449442251|ref|XP_004138895.1| (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3 [Cucumis sativus])

HSP 1 Score: 418.7 bits (1075), Expect = 6.2e-114
Identity = 210/211 (99.53%), Postives = 211/211 (100.00%), Query Frame = 1


Query: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKK 212
           WSPAATVTFMYEPSIHINEDLMETLTLEEK+
Sbjct: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKR 211

[Close]

BLAST of MELO3C008589 vs. NCBI nr
Match: gi|659082285|ref|XP_008441761.1| (PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerases II, IV and V subunit 3-like [Cucumis melo])

HSP 1 Score: 417.9 bits (1073), Expect = 1.1e-113
Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 1


Query: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEK 211
           WSPAATVTFMYEPSIHINEDLMETLTLEEK
Sbjct: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEK 210

[Close]

BLAST of MELO3C008589 vs. NCBI nr
Match: gi|590686859|ref|XP_007042502.1| (DNA-directed RNA polymerase family protein [Theobroma cacao])

HSP 1 Score: 384.0 bits (985), Expect = 1.7e-103
Identity = 193/212 (91.04%), Postives = 203/212 (95.75%), Query Frame = 1


Query: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           MEG SYQRFPKVKIREL+DDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGVSYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC +DQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           TSKDLYSSDHTVVPVDF+DSA    ++ + +GIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 TSKDLYSSDHTVVPVDFTDSAGY--DSSEQRGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKKN 213
           WSPAATVTFMYEP IHINED+METLTLEEK++
Sbjct: 181 WSPAATVTFMYEPEIHINEDMMETLTLEEKQS 210

[Close]

BLAST of MELO3C008589 vs. NCBI nr
Match: gi|1009149980|ref|XP_015892771.1| (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3 [Ziziphus jujuba])

HSP 1 Score: 382.5 bits (981), Expect = 4.9e-103
Identity = 190/212 (89.62%), Postives = 201/212 (94.81%), Query Frame = 1


Query: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           MEG SYQRFPKVKIRE++DDY KFELR+TDASMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGKSYQRFPKVKIREMKDDYLKFELRETDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGL+PLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV
Sbjct: 61  VLNDEFIAHRLGLVPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           TSKDLYSSDHTVVPVDFSDSA    ++ + +GIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 TSKDLYSSDHTVVPVDFSDSAGY--DSSENRGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKKN 213
           WSPAATVTFMYEP I INE+LM+TLT EEK+N
Sbjct: 181 WSPAATVTFMYEPDIRINEELMDTLTFEEKRN 210

[Close]

BLAST of MELO3C008589 vs. NCBI nr
Match: gi|823253251|ref|XP_012459245.1| (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3-like [Gossypium raimondii])

HSP 1 Score: 381.7 bits (979), Expect = 8.4e-103
Identity = 191/212 (90.09%), Postives = 203/212 (95.75%), Query Frame = 1


Query: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           MEG+SYQRFP+VKIREL+DDYAKFEL DTDASMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGASYQRFPRVKIRELKDDYAKFELHDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTS+RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC SDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSQRAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCISDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           TSKDLYSSDHTVVPVDF+DSA    E+ + +GIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 TSKDLYSSDHTVVPVDFTDSAGY--ESSEQRGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKKN 213
           WSPAATVTFMYEP IHINED+M+TLTLEEK++
Sbjct: 181 WSPAATVTFMYEPEIHINEDMMDTLTLEEKQS 210

The following BLAST results are available for this feature:

BLAST of MELO3C008589 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NRPB3_ARATH	4.9e-95	81.22	DNA-directed RNA polymerases II, IV and V subunit 3 OS=Arabidopsis thaliana GN=N...	[more]
RPD3B_ARATH	3.2e-86	75.59	DNA-directed RNA polymerases IV and V subunit 3B OS=Arabidopsis thaliana GN=NRPD...	[more]
RPB3_DICDI	3.1e-49	50.48	DNA-directed RNA polymerase II subunit rpb3 OS=Dictyostelium discoideum GN=polr2...	[more]
RPB3_BOVIN	2.2e-47	52.91	DNA-directed RNA polymerase II subunit RPB3 OS=Bos taurus GN=POLR2C PE=1 SV=1	[more]
RPB3_HUMAN	1.1e-46	52.38	DNA-directed RNA polymerase II subunit RPB3 OS=Homo sapiens GN=POLR2C PE=1 SV=2	[more]

BLAST of MELO3C008589 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LHS1_CUCSA	4.3e-114	99.53	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G093850 PE=4 SV=1	[more]
A0A061E7U0_THECC	1.2e-103	91.04	DNA-directed RNA polymerase family protein OS=Theobroma cacao GN=TCM_007121 PE=4...	[more]
A0A0D2V5K4_GOSRA	5.8e-103	90.09	Uncharacterized protein OS=Gossypium raimondii GN=B456_012G149200 PE=4 SV=1	[more]
A0A0D2SZ13_GOSRA	7.6e-103	91.43	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G023500 PE=4 SV=1	[more]
A0A0B0MXX2_GOSAR	7.6e-103	91.43	DNA-directed RNA polymerase II subunit RPB3-A-like protein OS=Gossypium arboreum...	[more]

BLAST of MELO3C008589 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G15430.1	2.8e-96	81.22	DNA-directed RNA polymerase family protein	[more]
AT2G15400.1	1.8e-87	75.59	DNA-directed RNA polymerase family protein	[more]
AT1G60850.2	1.2e-22	34.38	DNA-directed RNA polymerase family protein	[more]
AT1G60620.1	5.0e-21	33.98	RNA polymerase I subunit 43	[more]

BLAST of MELO3C008589 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449442251\|ref\|XP_004138895.1\|	6.2e-114	99.53	PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3 [Cucumis sativus]	[more]
gi\|659082285\|ref\|XP_008441761.1\|	1.1e-113	100.00	PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerases II, IV and V subuni...	[more]
gi\|590686859\|ref\|XP_007042502.1\|	1.7e-103	91.04	DNA-directed RNA polymerase family protein [Theobroma cacao]	[more]
gi\|1009149980\|ref\|XP_015892771.1\|	4.9e-103	89.62	PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3 [Ziziphus jujuba]	[more]
gi\|823253251\|ref\|XP_012459245.1\|	8.4e-103	90.09	PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3-like [Gossypium r...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001514	DNA-dir_RNA_pol_30-40kDasu_CS
IPR009025	RBP11-like_dimer
IPR011262	DNA-dir_RNA_pol_insert
IPR011263	DNA-dir_RNA_pol_RpoA/D/Rpb3

Vocabulary: **Biological Process**
Term	Definition
GO:0006351	transcription, DNA-templated

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0003899	DNA-directed RNA polymerase activity
GO:0046983	protein dimerization activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed RNA polymerase activity
molecular_function	GO:0046983	protein dimerization activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU53014	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C008589T1	MELO3C008589T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU53014	MU53014	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001514	DNA-directed RNA polymerase, 30-40kDa subunit, conserved site	PROSITE	PS00446	RNA_POL_D_30KD	coord: 35..75 scor
IPR009025	DNA-directed RNA polymerase, RBP11-like dimerisation domain	PFAM	PF01193	RNA_pol_L	coord: 23..124 score: 1.2
IPR009025	DNA-directed RNA polymerase, RBP11-like dimerisation domain	unknown	SSF55257	RBP11-like subunits of RNA polymerase	coord: 10..51 score: 7.26
IPR011262	DNA-directed RNA polymerase, insert domain	GENE3D	G3DSA:2.170.120.12		coord: 47..179 score: 1.1
IPR011262	DNA-directed RNA polymerase, insert domain	PFAM	PF01000	RNA_pol_A_bac	coord: 53..182 score: 1.1
IPR011262	DNA-directed RNA polymerase, insert domain	unknown	SSF56553	Insert subdomain of RNA polymerase alpha subunit	coord: 46..183 score: 8.55
IPR011263	DNA-directed RNA polymerase, RpoA/D/Rpb3-type	SMART	SM00662	rpoldneu2	coord: 21..213 score: 1.8
None	No IPR available	GENE3D	G3DSA:3.30.1360.10		coord: 180..207 score: 1.3E-24coord: 6..46 score: 1.3
None	No IPR available	PANTHER	PTHR11800	DNA-DIRECTED RNA POLYMERASE	coord: 5..209 score: 2.1E
None	No IPR available	PANTHER	PTHR11800:SF2	DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3	coord: 5..209 score: 2.1E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C008589	Cla002053	Watermelon (97103) v1	mewmB429
MELO3C008589	ClCG11G007460	Watermelon (Charleston Gray)	mewcgB371
MELO3C008589	Cla97C11G215950	Watermelon (97103) v2	mewmbB374
MELO3C008589	Bhi06G000824	Wax gourd	mewgoB455
MELO3C008589	CSPI02G07970	Wild cucumber (PI 183967)	cpimeB142
MELO3C008589	Cucsa.277780	Cucumber (Gy14) v1	cgymeB464
MELO3C008589	Lsi11G009430	Bottle gourd (USVL1VR-Ls)	lsimeB117
MELO3C008589	CsGy2G008250	Cucumber (Gy14) v2	cgybmeB124
MELO3C008589	CsaV3_2G010370	Cucumber (Chinese Long) v3	cucmeB144

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C008589	Cucurbita maxima (Rimu)	cmameB739
MELO3C008589	Cucurbita moschata (Rifu)	cmomeB726
MELO3C008589	Cucumber (Chinese Long) v2	cumeB132
MELO3C008589	Cucurbita pepo (Zucchini)	cpemeB101
MELO3C008589	Silver-seed gourd	carmeB0237