Cla002053 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla002053
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	DNA-directed RNA polymerase II subunit 3 (AHRD V1 **** A4RSP9_OSTLU); contains Interpro domain(s) IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type
Location	Chr11 : 475880 .. 478562 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGGGAGTTCGTACCAGCGGTTTCCAAAGGTGAAAATCCGGGAACTCCGAGATGATTACGCCAAATTCGAGCTCCGCGACACCGACGCCAGCATGGCCAACGCCCTCCGTCGCGTCATGATCGCCGAGGTGCCCACCATCGCCATTGACCTGGTAGAAATTGAAGTGAACTCTTCTGTTCTCAACGACGAGTTCATCGCTCATCGCCTTGGTCTCATTCCTCTCACCAGCGAGCGTGCCATGTCCATGCGCTTCTCTCGCGACTGTGATGCTTGCGATGGTGATGGCCAGTGCGAGTTTTGCTCTGTTGAGTTTCACCTTCGTGCCAAGTGCCACTCCGACCAAACCCTAGACGTCACCAGCAAGGATCTCTATAGTTCTGATCACACTGTTGTCCCCGTTGATTTCTCTGATTCTGCTGCAGCTAGTGGTGAAGCGTTGGATACCAAGTATGTCCTCTTACTCTCGTCTCTCAGACGTGTTTATTCTTGCCATTTTCTCGGCACGATTAAGTTGTTTGGCTTGTTGCTGATTATTGCATTAGTTTGTGTAGCTCTAGGTGTGATCTGTAATGTTTAGTCTACAACTCCATTTGCTATTCGGGTTACAAATGGAGGTTGAGGCTTAGGGGATTACACATCTTAGAGATAGACCATCACTAAAGCTCGGTCTCCAAAGTTCTAATTTGTTATTTCTATGCAACATTCCAACATGTTTGAGAACAATATCGTTTTAGTTTGGTGTCATTGTGGTTCATTAAGTAATTGCTCCAAAATTTGAGCTGGTTTTGTGATGATTGTAGAGGAATAATCATTGTGAAGCTACGTCGTGGTCAAGAGTTGCGGCTGAGAGCCATAGCTAGGAAGGGCATTGGTAAAGATCATGCAAAATGGTCGCCTGCAGCAACCGTGACATTCATGTATGAGCCAAACATTCACATCAATGAAGACCTAATGGAAACATTAACCCTAGAGGAAAAGAGAACTTGGGTTGAAAGTTGCCCAACCAGAGTATTTGAATTGGATCCTGTTACTCATCAGGTTCTTCTCATACAACCTCATTTTCTTTTTCTTCTTATTTGTTGCTTTACTACAATTATGCAATTGCTCAGAGGGTTGTGTTGAAGAGGTGATGTGGACGTTATTTGTCCTCCAACTGTATGTTGTTTAGAGTTACCAGATACGCCCCTCCCCCACAAAAAAAAAAAAAAAAAAAAAAAAGAAAATGATTGTCTTGGCAATTTCCTTCCACGGGCTAGAAGAACCTCTCCAAGTTTTGGAATTGATGAAGCCTCTGAAGGAGTCAACATCATGTTTGCTTTTCACGACCAACCTCCAAAAAGCGTTCATTTCATGTTCAAATCAACATAACCAGGTAAAAAGAATTCTCAAAATGAAGATTTTCCACTCCCAAACCTCCCAAGGAATGATGAGTCATGATCCCATTCCAATCTGACTAAATTGCAGCTTCCAACTCCTTGCAACTAGCTTCTATGTTTTCTCACTCTTCTGTTGATAATCGTCCTTCCGAAGGTTGTTTCGACTCAGCAAATGAGATATTTAAAGAGAAGGTGTCTTGAGATGATTTTGAGGAGTCTAATAAGGAGCCTATGGTAAGTTTTAGGCTTTAGTCGTGAAGACTTGGATCAGAATGTTTCGTTTTTCATTGGAAACAGTGAAGCTCTGAAGCTCCTGAAGAGGATTTTAATGATGAAGCTATTGGATAGGCTTTAAGCCTAAGTCTTCTCCAAATCTTCAAGCATCTTCTTCGAGAAGTGCTCTTATTTTCTTAAAGTTCGTGAATTTGAAGTGTGAGATTCGTACAAGAGCCGCTTGTCAAGGCGTTTAAGTCTCTTAATCTATAAGGCTTTTTGGTTGCAGCTGGTTTTGTGTTGTTTATTCTACTCCAGTTATGGTACTCTTAAGGTGTTTAAGTGCTCTTATTTCATTTGTTTATGTTCTTGGTGGCTCCAATTCAGACATGTCTTCCTTCCTTGTGGTTGGTTTTTTATGGGGCTTGCATTTATAGTATTTTCCCCCATGGTTGGCTGTTTAGTTATTTTGTAGCCTATTTTGGTTTCTTTCTTTCTTTCTTTTATTTTTAAAATGTAATTGCTTCCTGTTATCTTTTCTTGTTTGGTTCCTTCGTTCTTTTTCGCATTTTTTTGATTTCTCCCTCATATTTTATGTATAACCTGAATGGTGTAAAATTTTAGGAGTGCCAATGAATTAGATTTTTTTCATTTAGTTGTATCAACATCCAAATTTTAAGATATTTTGCCAATGGCTAAAGATAGTACAAATTATCCAAACTTAAAATTATCTTGTTTCTGATAGCTAATATATATTCATTTGTGTTTTCTGTCTGTCTTTATGCTGAATTCTTGTTGCTCATTTTGTTCGTAAAGGTTATGGTGGTTGATCCTGAGGCATACACTTATGATGATGAGGTGATTAAGAAAGCAGAAGCTATGGGTAAAGCTGGACTAGTGGATATTACTGCAAAAGAAGATAGTTTTATCTTCACAGTTGAATCTACCGGTGCAATCAAAGCTTCCCAGTTGATACTCAATGCCATAGATATCCTGAAACAGAAGCTGGATGCAGTCCGTCTTTCAGACGATACTGTAGAAGCAGATGATCAGTTTGGTGAGTTAGGTGCACATATGCGAGGTGGATGA

mRNA sequence

ATGGAAGGGAGTTCGTACCAGCGGTTTCCAAAGGTGAAAATCCGGGAACTCCGAGATGATTACGCCAAATTCGAGCTCCGCGACACCGACGCCAGCATGGCCAACGCCCTCCGTCGCGTCATGATCGCCGAGGTGCCCACCATCGCCATTGACCTGGTAGAAATTGAAGTGAACTCTTCTGTTCTCAACGACGAGTTCATCGCTCATCGCCTTGGTCTCATTCCTCTCACCAGCGAGCGTGCCATGTCCATGCGCTTCTCTCGCGACTGTGATGCTTGCGATGGTGATGGCCAGTGCGAGTTTTGCTCTGTTGAGTTTCACCTTCGTGCCAAGTGCCACTCCGACCAAACCCTAGACGTCACCAGCAAGGATCTCTATAGTTCTGATCACACTGTTGTCCCCGTTGATTTCTCTGATTCTGCTGCAGCTAGTGGTGAAGCGTTGGATACCAAAGGAATAATCATTGTGAAGCTACGTCGTGGTCAAGAGTTGCGGCTGAGAGCCATAGCTAGGAAGGGCATTGGTAAAGATCATGCAAAATGGTCGCCTGCAGCAACCGTGACATTCATGTATGAGCCAAACATTCACATCAATGAAGACCTAATGGAAACATTAACCCTAGAGGAAAAGAGAACTTGGGTTGAAAGTTGCCCAACCAGAGTATTTGAATTGGATCCTGTTACTCATCAGGTTATGGTGGTTGATCCTGAGGCATACACTTATGATGATGAGGTGATTAAGAAAGCAGAAGCTATGGGTAAAGCTGGACTAGTGGATATTACTGCAAAAGAAGATAGTTTTATCTTCACAGTTGAATCTACCGGTGCAATCAAAGCTTCCCAGTTGATACTCAATGCCATAGATATCCTGAAACAGAAGCTGGATGCAGTCCGTCTTTCAGACGATACTGTAGAAGCAGATGATCAGTTTGGTGAGTTAGGTGCACATATGCGAGGTGGATGA

Coding sequence (CDS)

ATGGAAGGGAGTTCGTACCAGCGGTTTCCAAAGGTGAAAATCCGGGAACTCCGAGATGATTACGCCAAATTCGAGCTCCGCGACACCGACGCCAGCATGGCCAACGCCCTCCGTCGCGTCATGATCGCCGAGGTGCCCACCATCGCCATTGACCTGGTAGAAATTGAAGTGAACTCTTCTGTTCTCAACGACGAGTTCATCGCTCATCGCCTTGGTCTCATTCCTCTCACCAGCGAGCGTGCCATGTCCATGCGCTTCTCTCGCGACTGTGATGCTTGCGATGGTGATGGCCAGTGCGAGTTTTGCTCTGTTGAGTTTCACCTTCGTGCCAAGTGCCACTCCGACCAAACCCTAGACGTCACCAGCAAGGATCTCTATAGTTCTGATCACACTGTTGTCCCCGTTGATTTCTCTGATTCTGCTGCAGCTAGTGGTGAAGCGTTGGATACCAAAGGAATAATCATTGTGAAGCTACGTCGTGGTCAAGAGTTGCGGCTGAGAGCCATAGCTAGGAAGGGCATTGGTAAAGATCATGCAAAATGGTCGCCTGCAGCAACCGTGACATTCATGTATGAGCCAAACATTCACATCAATGAAGACCTAATGGAAACATTAACCCTAGAGGAAAAGAGAACTTGGGTTGAAAGTTGCCCAACCAGAGTATTTGAATTGGATCCTGTTACTCATCAGGTTATGGTGGTTGATCCTGAGGCATACACTTATGATGATGAGGTGATTAAGAAAGCAGAAGCTATGGGTAAAGCTGGACTAGTGGATATTACTGCAAAAGAAGATAGTTTTATCTTCACAGTTGAATCTACCGGTGCAATCAAAGCTTCCCAGTTGATACTCAATGCCATAGATATCCTGAAACAGAAGCTGGATGCAGTCCGTCTTTCAGACGATACTGTAGAAGCAGATGATCAGTTTGGTGAGTTAGGTGCACATATGCGAGGTGGATGA

Protein sequence

MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPNIHINEDLMETLTLEEKRTWVESCPTRVFELDPVTHQVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLSDDTVEADDQFGELGAHMRGG

Homology

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BLAST of Cla002053 vs. Swiss-Prot
Match: NRPB3_ARATH (DNA-directed RNA polymerases II, IV and V subunit 3 OS=Arabidopsis thaliana GN=NRPB3 PE=1 SV=1)

HSP 1 Score: 528.9 bits (1361), Expect = 3.9e-149
Identity = 263/320 (82.19%), Postives = 296/320 (92.50%), Query Frame = 1


Query: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           M+G++YQRFPK+KIREL+DDYAKFELR+TD SMANALRRVMI+EVPT+AIDLVEIEVNSS
Sbjct: 1   MDGATYQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEF L +KC +DQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDSAAASGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           TS+DLYS+D TV PVDF+  ++ S ++ + KGIIIVKLRRGQEL+LRAIARKGIGKDHAK
Sbjct: 121 TSRDLYSADPTVTPVDFTIDSSVS-DSSEHKGIIIVKLRRGQELKLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPNIHINEDLMETLTLEEKRTWVESCPTRVFELDPVTHQVMVVDPEAYT 240
           WSPAATVTFMYEP+I INED+M+TL+ EEK   +ES PT+VF +DPVT QV+VVDPEAYT
Sbjct: 181 WSPAATVTFMYEPDIIINEDMMDTLSDEEKIDLIESSPTKVFGMDPVTRQVVVVDPEAYT 240

Query: 241 YDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300
           YD+EVIKKAEAMGK GL++I+ K+DSFIFTVESTGA+KASQL+LNAID+LKQKLDAVRLS
Sbjct: 241 YDEEVIKKAEAMGKPGLIEISPKDDSFIFTVESTGAVKASQLVLNAIDLLKQKLDAVRLS 300

Query: 301 DDTVEADDQFGELGAHMRGG 321
           DDTVEADDQFGELGAHMRGG
Sbjct: 301 DDTVEADDQFGELGAHMRGG 319

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BLAST of Cla002053 vs. Swiss-Prot
Match: RPD3B_ARATH (DNA-directed RNA polymerases IV and V subunit 3B OS=Arabidopsis thaliana GN=NRPD3B PE=1 SV=2)

HSP 1 Score: 489.6 bits (1259), Expect = 2.7e-137
Identity = 246/320 (76.88%), Postives = 283/320 (88.44%), Query Frame = 1


Query: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           M+G +YQRFP VKIREL+DDYAKFELR+TD SMANALRRVMI+EVPT+AI LV+IEVNSS
Sbjct: 1   MDGVTYQRFPTVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIA RL LIPLTSERAMSMRF +DC+ C+GD  CEFCSVEF L AKC +DQTLDV
Sbjct: 61  VLNDEFIAQRLSLIPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKCVTDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDSAAASGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           TS+DLYS+D TV PVDF+ +++ S ++ + KGIII KLRRGQEL+L+A+ARKGIGKDHAK
Sbjct: 121 TSRDLYSADPTVTPVDFTSNSSTS-DSSEHKGIIIAKLRRGQELKLKALARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPNIHINEDLMETLTLEEKRTWVESCPTRVFELDPVTHQVMVVDPEAYT 240
           WSPAATVT+MYEP+I INE++M TLT EEK   +ES PT+VF +DPVT QV+VVDPEAYT
Sbjct: 181 WSPAATVTYMYEPDIIINEEMMNTLTDEEKIDLIESSPTKVFGIDPVTGQVVVVDPEAYT 240

Query: 241 YDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300
           YD+EVIKKAEAMGK GL++I  K DSF+FTVESTGA+KASQL+LNAIDILKQKLDA+RLS
Sbjct: 241 YDEEVIKKAEAMGKPGLIEIHPKHDSFVFTVESTGALKASQLVLNAIDILKQKLDAIRLS 300

Query: 301 DDTVEADDQFGELGAHMRGG 321
           D+TVEADDQFGELGAHMR G
Sbjct: 301 DNTVEADDQFGELGAHMREG 319

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BLAST of Cla002053 vs. Swiss-Prot
Match: RPB3_DICDI (DNA-directed RNA polymerase II subunit rpb3 OS=Dictyostelium discoideum GN=polr2c PE=3 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 8.7e-72
Identity = 146/297 (49.16%), Postives = 197/297 (66.33%), Query Frame = 1


Query: 4   SSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLN 63
           S   R P+++I E+++D   F L +TD S+ANALRRVMIAEVPT+ IDLVE E N+SVL 
Sbjct: 6   SQLTRQPELEILEIKNDSIIFILSNTDISVANALRRVMIAEVPTMCIDLVEFESNNSVLC 65

Query: 64  DEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSK 123
           DEFIAHRLGLIPL S+      ++RDC   D   +C+ CSVE  L  KC  ++  DVTS 
Sbjct: 66  DEFIAHRLGLIPLVSDNIDKFCYTRDCSCSD---RCDQCSVELRLNVKCTENRPRDVTSS 125

Query: 124 DLYSSDHTVVPVDFSDSAAASGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSP 183
           DL S +  V+PV    +++ S +      I IVKLRRGQE++LRAIA+KG+GK+HAKWSP
Sbjct: 126 DLLSQNSAVIPVSSQVTSSNSEQE-----IPIVKLRRGQEIKLRAIAKKGVGKEHAKWSP 185

Query: 184 AATVTFMYEPNIHINEDLMETLTLEEKRTWVESCPTRVFELDP--VTHQVMVVDPEAYTY 243
           +   T+ ++P I +N++ ++ LT ++K  WV SCPT+V+   P   T QV + DP    Y
Sbjct: 186 SCVATYQFQPIIVLNQNRIDELTDQQKEEWVGSCPTKVYSYSPHQSTQQVTIEDPLRCVY 245

Query: 244 DDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVR 299
             E  KKAE+ GK  LV +  K+D FIFTVES+GA+K   ++L AI I+K+KL  ++
Sbjct: 246 CLECKKKAESFGKPDLVHLEQKQDKFIFTVESSGALKPEDIVLYAIQIIKRKLTDIQ 294

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BLAST of Cla002053 vs. Swiss-Prot
Match: RPB3_BOVIN (DNA-directed RNA polymerase II subunit RPB3 OS=Bos taurus GN=POLR2C PE=1 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 5.5e-50
Identity = 120/290 (41.38%), Postives = 165/290 (56.90%), Query Frame = 1


Query: 6   YQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
           Y   P V+I EL D+  KF + +TD ++AN++RRV IAEVP IAID V+I+ NSSVL+DE
Sbjct: 3   YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62

Query: 66  FIAHRLGLIPLTSERAMS-MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 125
           FIAHRLGLIPLTS+  +  +++SRDC     +  C  CSVEF L  +C+ DQT  VTS+D
Sbjct: 63  FIAHRLGLIPLTSDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 122

Query: 126 LYSSDHTVVPVDFSDSAAASGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 185
           L S+   V+PV   +      + ++   I+IVKLR+GQELRLRA A+KG GK+HAKW+P 
Sbjct: 123 LISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 182

Query: 186 ATVTFMYEPNIHINEDLMETLTLEEKRTWVESCPTRVFELDPVTHQVMVVDPEAYTYDDE 245
           A V F Y+P     ++ +      +   W +S      ELD         D     YD  
Sbjct: 183 AGVAFEYDP-----DNALRHTVYPKPEEWPKS---EYSELDE--------DESQAPYDP- 242

Query: 246 VIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKL 295
                             K + F + VES G+++   ++L+A+  LK+KL
Sbjct: 243 ----------------NGKPERFYYNVESCGSLRPETIVLSALSGLKKKL 256

[Close]

BLAST of Cla002053 vs. Swiss-Prot
Match: RPB3_HUMAN (DNA-directed RNA polymerase II subunit RPB3 OS=Homo sapiens GN=POLR2C PE=1 SV=2)

HSP 1 Score: 197.2 bits (500), Expect = 2.7e-49
Identity = 119/290 (41.03%), Postives = 164/290 (56.55%), Query Frame = 1


Query: 6   YQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
           Y   P V+I EL D+  KF + +TD ++AN++RRV IAEVP IAID V+I+ NSSVL+DE
Sbjct: 3   YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62

Query: 66  FIAHRLGLIPLTSERAMS-MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 125
           FIAHRLGLIPL S+  +  +++SRDC     +  C  CSVEF L  +C+ DQT  VTS+D
Sbjct: 63  FIAHRLGLIPLISDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 122

Query: 126 LYSSDHTVVPVDFSDSAAASGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 185
           L S+   V+PV   +      + ++   I+IVKLR+GQELRLRA A+KG GK+HAKW+P 
Sbjct: 123 LISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 182

Query: 186 ATVTFMYEPNIHINEDLMETLTLEEKRTWVESCPTRVFELDPVTHQVMVVDPEAYTYDDE 245
           A V F Y+P     ++ +      +   W +S      ELD         D     YD  
Sbjct: 183 AGVAFEYDP-----DNALRHTVYPKPEEWPKS---EYSELDE--------DESQAPYDP- 242

Query: 246 VIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKL 295
                             K + F + VES G+++   ++L+A+  LK+KL
Sbjct: 243 ----------------NGKPERFYYNVESCGSLRPETIVLSALSGLKKKL 256

[Close]

BLAST of Cla002053 vs. TrEMBL
Match: A0A0A0LHS1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G093850 PE=4 SV=1)

HSP 1 Score: 625.9 bits (1613), Expect = 2.6e-176
Identity = 316/320 (98.75%), Postives = 319/320 (99.69%), Query Frame = 1


Query: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDSAAASGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           TSKDLYSSDHTVVPVDFSDSAAA+GEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPNIHINEDLMETLTLEEKRTWVESCPTRVFELDPVTHQVMVVDPEAYT 240
           WSPAATVTFMYEP+IHINEDLMETLTLEEKRTWVESCPTRVFELD VTHQVMVVDPEAYT
Sbjct: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDTVTHQVMVVDPEAYT 240

Query: 241 YDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300
           YDDEVIKKAEAMGKAGLVDITA+EDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS
Sbjct: 241 YDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300

Query: 301 DDTVEADDQFGELGAHMRGG 321
           DDTVEADDQFGELGAHMRGG
Sbjct: 301 DDTVEADDQFGELGAHMRGG 320

[Close]

BLAST of Cla002053 vs. TrEMBL
Match: A0A061E7U0_THECC (DNA-directed RNA polymerase family protein OS=Theobroma cacao GN=TCM_007121 PE=4 SV=1)

HSP 1 Score: 567.4 bits (1461), Expect = 1.1e-158
Identity = 286/320 (89.38%), Postives = 306/320 (95.62%), Query Frame = 1


Query: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           MEG SYQRFPKVKIREL+DDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGVSYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC +DQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDSAAASGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           TSKDLYSSDHTVVPVDF+DSA    ++ + +GIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 TSKDLYSSDHTVVPVDFTDSAGY--DSSEQRGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPNIHINEDLMETLTLEEKRTWVESCPTRVFELDPVTHQVMVVDPEAYT 240
           WSPAATVTFMYEP IHINED+METLTLEEK+++VES PTRVF++DP T QV+VVDPEAYT
Sbjct: 181 WSPAATVTFMYEPEIHINEDMMETLTLEEKQSFVESSPTRVFDIDPNTQQVVVVDPEAYT 240

Query: 241 YDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300
           YDDEV+KKAEAMGK GLV+I AKEDSFIFTVESTGAIKASQL+LNAI++LKQKLDAVRLS
Sbjct: 241 YDDEVLKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLS 300

Query: 301 DDTVEADDQFGELGAHMRGG 321
           +DTVEADDQFGELGAHMRGG
Sbjct: 301 EDTVEADDQFGELGAHMRGG 318

[Close]

BLAST of Cla002053 vs. TrEMBL
Match: A0A0B0MXX2_GOSAR (DNA-directed RNA polymerase II subunit RPB3-A-like protein OS=Gossypium arboreum GN=F383_29872 PE=4 SV=1)

HSP 1 Score: 563.5 bits (1451), Expect = 1.6e-157
Identity = 285/320 (89.06%), Postives = 305/320 (95.31%), Query Frame = 1


Query: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           MEG SYQRFPKVKIREL+DDYAKFELRDTDASMANALRRVMI+EVPTIAIDLVEIEVNSS
Sbjct: 1   MEGISYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMISEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC SDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCISDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDSAAASGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           TSKDLYSSDHTVVPVDF+D+A    ++ + +GIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 TSKDLYSSDHTVVPVDFTDNAGY--DSTEPRGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPNIHINEDLMETLTLEEKRTWVESCPTRVFELDPVTHQVMVVDPEAYT 240
           WSPAATVTFMYEP IHINEDLME+LTLEEK ++VES PT+VF++DP T QV+VVDPEAYT
Sbjct: 181 WSPAATVTFMYEPEIHINEDLMESLTLEEKLSFVESSPTKVFDIDPNTQQVVVVDPEAYT 240

Query: 241 YDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300
           YDDEV+KKAEAMGK GLV+I AKEDSFIFTVESTGAIKASQL+LNAI+ILKQKLDAVRLS
Sbjct: 241 YDDEVLKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEILKQKLDAVRLS 300

Query: 301 DDTVEADDQFGELGAHMRGG 321
           +DTVEADDQFGELGAHMRGG
Sbjct: 301 EDTVEADDQFGELGAHMRGG 318

[Close]

BLAST of Cla002053 vs. TrEMBL
Match: A0A0D2SZ13_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G023500 PE=4 SV=1)

HSP 1 Score: 563.5 bits (1451), Expect = 1.6e-157
Identity = 285/320 (89.06%), Postives = 305/320 (95.31%), Query Frame = 1


Query: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           MEG SYQRFPKVKIREL+DDYAKFELRDTDASMANALRRVMI+EVPTIAIDLVEIEVNSS
Sbjct: 1   MEGISYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMISEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC SDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCISDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDSAAASGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           TSKDLYSSDHTVVPVDF+D+A    ++ + +GIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 TSKDLYSSDHTVVPVDFTDNAGY--DSTEPRGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPNIHINEDLMETLTLEEKRTWVESCPTRVFELDPVTHQVMVVDPEAYT 240
           WSPAATVTFMYEP IHINEDLME+LTLEEK ++VES PT+VF++DP T QV+VVDPEAYT
Sbjct: 181 WSPAATVTFMYEPEIHINEDLMESLTLEEKLSFVESSPTKVFDIDPNTQQVVVVDPEAYT 240

Query: 241 YDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300
           YDDEV+KKAEAMGK GLV+I AKEDSFIFTVESTGAIKASQL+LNAI+ILKQKLDAVRLS
Sbjct: 241 YDDEVLKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEILKQKLDAVRLS 300

Query: 301 DDTVEADDQFGELGAHMRGG 321
           +DTVEADDQFGELGAHMRGG
Sbjct: 301 EDTVEADDQFGELGAHMRGG 318

[Close]

BLAST of Cla002053 vs. TrEMBL
Match: V4SBK3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10028849mg PE=4 SV=1)

HSP 1 Score: 562.4 bits (1448), Expect = 3.6e-157
Identity = 284/320 (88.75%), Postives = 301/320 (94.06%), Query Frame = 1


Query: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           M+G+SYQRFPKVKIREL+DDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MDGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDSAAASGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           TSKDLYSSDH+VVPVDF D A         +GIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 TSKDLYSSDHSVVPVDFVDPAGYDSTD-QQRGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPNIHINEDLMETLTLEEKRTWVESCPTRVFELDPVTHQVMVVDPEAYT 240
           WSPAATVTFMYEP IHINEDLME+L+LEEK++WVES PT+VF++DP T QV VVD EAYT
Sbjct: 181 WSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYT 240

Query: 241 YDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300
           YDDEVIKKAEAMGK GLV+I AKEDSFIFTVESTGAIKASQL+LNAI++LKQKLDAVRLS
Sbjct: 241 YDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLS 300

Query: 301 DDTVEADDQFGELGAHMRGG 321
           +DTVEADDQFGELGAHMRGG
Sbjct: 301 EDTVEADDQFGELGAHMRGG 319

[Close]

BLAST of Cla002053 vs. NCBI nr
Match: gi|449442251|ref|XP_004138895.1| (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3 [Cucumis sativus])

HSP 1 Score: 625.9 bits (1613), Expect = 3.8e-176
Identity = 316/320 (98.75%), Postives = 319/320 (99.69%), Query Frame = 1


Query: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDSAAASGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           TSKDLYSSDHTVVPVDFSDSAAA+GEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPNIHINEDLMETLTLEEKRTWVESCPTRVFELDPVTHQVMVVDPEAYT 240
           WSPAATVTFMYEP+IHINEDLMETLTLEEKRTWVESCPTRVFELD VTHQVMVVDPEAYT
Sbjct: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDTVTHQVMVVDPEAYT 240

Query: 241 YDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300
           YDDEVIKKAEAMGKAGLVDITA+EDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS
Sbjct: 241 YDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300

Query: 301 DDTVEADDQFGELGAHMRGG 321
           DDTVEADDQFGELGAHMRGG
Sbjct: 301 DDTVEADDQFGELGAHMRGG 320

[Close]

BLAST of Cla002053 vs. NCBI nr
Match: gi|659082285|ref|XP_008441761.1| (PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerases II, IV and V subunit 3-like [Cucumis melo])

HSP 1 Score: 625.2 bits (1611), Expect = 6.5e-176
Identity = 315/320 (98.44%), Postives = 319/320 (99.69%), Query Frame = 1


Query: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDSAAASGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           TSKDLYSSDHTVVPVDFSDSAAA+GEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPNIHINEDLMETLTLEEKRTWVESCPTRVFELDPVTHQVMVVDPEAYT 240
           WSPAATVTFMYEP+IHINEDLMETLTLEEK TWVESCPTRVFELDPVTHQVMVV+PEAYT
Sbjct: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKXTWVESCPTRVFELDPVTHQVMVVEPEAYT 240

Query: 241 YDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300
           YDDEVIKKAEAMGKAGLVDITA+EDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS
Sbjct: 241 YDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300

Query: 301 DDTVEADDQFGELGAHMRGG 321
           DDTVEADDQFGELGAHMRGG
Sbjct: 301 DDTVEADDQFGELGAHMRGG 320

[Close]

BLAST of Cla002053 vs. NCBI nr
Match: gi|1009149980|ref|XP_015892771.1| (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3 [Ziziphus jujuba])

HSP 1 Score: 572.8 bits (1475), Expect = 3.8e-160
Identity = 285/320 (89.06%), Postives = 306/320 (95.62%), Query Frame = 1


Query: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           MEG SYQRFPKVKIRE++DDY KFELR+TDASMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGKSYQRFPKVKIREMKDDYLKFELRETDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGL+PLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV
Sbjct: 61  VLNDEFIAHRLGLVPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDSAAASGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           TSKDLYSSDHTVVPVDFSDSA    ++ + +GIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 TSKDLYSSDHTVVPVDFSDSAGY--DSSENRGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPNIHINEDLMETLTLEEKRTWVESCPTRVFELDPVTHQVMVVDPEAYT 240
           WSPAATVTFMYEP+I INE+LM+TLT EEKR WV+S PT+VF++DP THQV+VVDPEAYT
Sbjct: 181 WSPAATVTFMYEPDIRINEELMDTLTFEEKRNWVDSSPTKVFDIDPNTHQVVVVDPEAYT 240

Query: 241 YDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300
           YD+EVIKKA+AMGK GLVDITAKEDSFIFTVESTGAIKASQL+LNAI++LKQKLDAVRLS
Sbjct: 241 YDEEVIKKADAMGKHGLVDITAKEDSFIFTVESTGAIKASQLLLNAIEVLKQKLDAVRLS 300

Query: 301 DDTVEADDQFGELGAHMRGG 321
           DDTVEADDQFGELGAHMRGG
Sbjct: 301 DDTVEADDQFGELGAHMRGG 318

[Close]

BLAST of Cla002053 vs. NCBI nr
Match: gi|590686859|ref|XP_007042502.1| (DNA-directed RNA polymerase family protein [Theobroma cacao])

HSP 1 Score: 567.4 bits (1461), Expect = 1.6e-158
Identity = 286/320 (89.38%), Postives = 306/320 (95.62%), Query Frame = 1


Query: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           MEG SYQRFPKVKIREL+DDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGVSYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC +DQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDSAAASGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           TSKDLYSSDHTVVPVDF+DSA    ++ + +GIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 TSKDLYSSDHTVVPVDFTDSAGY--DSSEQRGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPNIHINEDLMETLTLEEKRTWVESCPTRVFELDPVTHQVMVVDPEAYT 240
           WSPAATVTFMYEP IHINED+METLTLEEK+++VES PTRVF++DP T QV+VVDPEAYT
Sbjct: 181 WSPAATVTFMYEPEIHINEDMMETLTLEEKQSFVESSPTRVFDIDPNTQQVVVVDPEAYT 240

Query: 241 YDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300
           YDDEV+KKAEAMGK GLV+I AKEDSFIFTVESTGAIKASQL+LNAI++LKQKLDAVRLS
Sbjct: 241 YDDEVLKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLS 300

Query: 301 DDTVEADDQFGELGAHMRGG 321
           +DTVEADDQFGELGAHMRGG
Sbjct: 301 EDTVEADDQFGELGAHMRGG 318

[Close]

BLAST of Cla002053 vs. NCBI nr
Match: gi|823203502|ref|XP_012436162.1| (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3 [Gossypium raimondii])

HSP 1 Score: 563.5 bits (1451), Expect = 2.3e-157
Identity = 285/320 (89.06%), Postives = 305/320 (95.31%), Query Frame = 1


Query: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           MEG SYQRFPKVKIREL+DDYAKFELRDTDASMANALRRVMI+EVPTIAIDLVEIEVNSS
Sbjct: 1   MEGISYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMISEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC SDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCISDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDSAAASGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           TSKDLYSSDHTVVPVDF+D+A    ++ + +GIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 TSKDLYSSDHTVVPVDFTDNAGY--DSTEPRGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPNIHINEDLMETLTLEEKRTWVESCPTRVFELDPVTHQVMVVDPEAYT 240
           WSPAATVTFMYEP IHINEDLME+LTLEEK ++VES PT+VF++DP T QV+VVDPEAYT
Sbjct: 181 WSPAATVTFMYEPEIHINEDLMESLTLEEKLSFVESSPTKVFDIDPNTQQVVVVDPEAYT 240

Query: 241 YDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300
           YDDEV+KKAEAMGK GLV+I AKEDSFIFTVESTGAIKASQL+LNAI+ILKQKLDAVRLS
Sbjct: 241 YDDEVLKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEILKQKLDAVRLS 300

Query: 301 DDTVEADDQFGELGAHMRGG 321
           +DTVEADDQFGELGAHMRGG
Sbjct: 301 EDTVEADDQFGELGAHMRGG 318

The following BLAST results are available for this feature:

BLAST of Cla002053 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NRPB3_ARATH	3.9e-149	82.19	DNA-directed RNA polymerases II, IV and V subunit 3 OS=Arabidopsis thaliana GN=N...	[more]
RPD3B_ARATH	2.7e-137	76.88	DNA-directed RNA polymerases IV and V subunit 3B OS=Arabidopsis thaliana GN=NRPD...	[more]
RPB3_DICDI	8.7e-72	49.16	DNA-directed RNA polymerase II subunit rpb3 OS=Dictyostelium discoideum GN=polr2...	[more]
RPB3_BOVIN	5.5e-50	41.38	DNA-directed RNA polymerase II subunit RPB3 OS=Bos taurus GN=POLR2C PE=1 SV=1	[more]
RPB3_HUMAN	2.7e-49	41.03	DNA-directed RNA polymerase II subunit RPB3 OS=Homo sapiens GN=POLR2C PE=1 SV=2	[more]

BLAST of Cla002053 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LHS1_CUCSA	2.6e-176	98.75	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G093850 PE=4 SV=1	[more]
A0A061E7U0_THECC	1.1e-158	89.38	DNA-directed RNA polymerase family protein OS=Theobroma cacao GN=TCM_007121 PE=4...	[more]
A0A0B0MXX2_GOSAR	1.6e-157	89.06	DNA-directed RNA polymerase II subunit RPB3-A-like protein OS=Gossypium arboreum...	[more]
A0A0D2SZ13_GOSRA	1.6e-157	89.06	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G023500 PE=4 SV=1	[more]
V4SBK3_9ROSI	3.6e-157	88.75	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10028849mg PE=4 SV=1	[more]

BLAST of Cla002053 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449442251\|ref\|XP_004138895.1\|	3.8e-176	98.75	PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3 [Cucumis sativus]	[more]
gi\|659082285\|ref\|XP_008441761.1\|	6.5e-176	98.44	PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerases II, IV and V subuni...	[more]
gi\|1009149980\|ref\|XP_015892771.1\|	3.8e-160	89.06	PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3 [Ziziphus jujuba]	[more]
gi\|590686859\|ref\|XP_007042502.1\|	1.6e-158	89.38	DNA-directed RNA polymerase family protein [Theobroma cacao]	[more]
gi\|823203502\|ref\|XP_012436162.1\|	2.3e-157	89.06	PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3 [Gossypium raimon...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001514	DNA-dir_RNA_pol_30-40kDasu_CS
IPR009025	RBP11-like_dimer
IPR011262	DNA-dir_RNA_pol_insert
IPR011263	DNA-dir_RNA_pol_RpoA/D/Rpb3

Vocabulary: **Biological Process**
Term	Definition
GO:0006351	transcription, DNA-templated

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0003899	DNA-directed RNA polymerase activity
GO:0046983	protein dimerization activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed RNA polymerase activity
molecular_function	GO:0046983	protein dimerization activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU11183	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU31778	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU49241	watermelon EST collection version 2.0	transcribed_cluster
WMU64940	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla002053	Cla002053.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU64940	WMU64940	transcribed_cluster
WMU11183	WMU11183	transcribed_cluster
WMU31778	WMU31778	transcribed_cluster
WMU49241	WMU49241	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001514	DNA-directed RNA polymerase, 30-40kDa subunit, conserved site	PROSITE	PS00446	RNA_POL_D_30KD	coord: 35..75 scor
IPR009025	DNA-directed RNA polymerase, RBP11-like dimerisation domain	PFAM	PF01193	RNA_pol_L	coord: 23..294 score: 2.7
IPR009025	DNA-directed RNA polymerase, RBP11-like dimerisation domain	unknown	SSF55257	RBP11-like subunits of RNA polymerase	coord: 214..302 score: 6.48E-35coord: 10..51 score: 6.48
IPR011262	DNA-directed RNA polymerase, insert domain	GENE3D	G3DSA:2.170.120.12		coord: 47..179 score: 2.9
IPR011262	DNA-directed RNA polymerase, insert domain	PFAM	PF01000	RNA_pol_A_bac	coord: 53..182 score: 3.2
IPR011262	DNA-directed RNA polymerase, insert domain	unknown	SSF56553	Insert subdomain of RNA polymerase alpha subunit	coord: 46..183 score: 2.79
IPR011263	DNA-directed RNA polymerase, RpoA/D/Rpb3-type	SMART	SM00662	rpoldneu2	coord: 21..300 score: 1.9
None	No IPR available	GENE3D	G3DSA:3.30.1360.10		coord: 6..46 score: 2.7E-44coord: 180..298 score: 2.7
None	No IPR available	PANTHER	PTHR11800	DNA-DIRECTED RNA POLYMERASE	coord: 5..318 score: 1.3E
None	No IPR available	PANTHER	PTHR11800:SF2	DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3	coord: 5..318 score: 1.3E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla002053	Cla97C11G215950	Watermelon (97103) v2	wmwmbB360
Cla002053	MELO3C008589	Melon (DHL92) v3.5.1	mewmB429
Cla002053	ClCG11G007460	Watermelon (Charleston Gray)	wcgwmB108
Cla002053	Lsi11G009430	Bottle gourd (USVL1VR-Ls)	lsiwmB115

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None