WMU11183 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU11183
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	DNA-directed RNA polymerase II subunit, putative
Location	Chr11 : 475661 .. 477712 (-)
Sequence length	687

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

AGAGCCATAGCTAGGAAGGGCATTGGTAAAGATCATGCAAAATGGTCGCCTGCAGCAACCGTGACATTCATGTATGAGCCAAACATTCACATCAATGAAGACCTAATGGAAACATTAACCCTAGAGGAAAAGAGAACTTGGGTTGAAAGTTGCCCAACCAGAGTATTTGAATTGGATCCTGTTACTCATCAGGTTATGGTGGTTGATCCTGAGGCATACACTTATGATGATGAGGTGATTAAGAAAGCAGAAGCTATGGGTAAAGCTGGACTAGTGGATATTACTGCAAAAGAAGATAGTTTTATCTTCACAGTTGAATCTACCGGTGCAATCAAAGCTTCCCAGTTGATACTCAATGCCATAGATATCCTGAAACAGAAGCTGGATGCAGTCCGTCTTTCAGACGATACTGTAGAAGCAGATGATCAGTTTGGTGAGTTAGGTGCACATATGCGAGGTGGATGATCCAAATACCAGCCTTACCCATATGTTTGTAGGAGGTGAGACTAACTTGAATTTTGTTTTCTGGACAATCTGGTTTTTTGTATGAATGAACTTGGTTTAGTGCAGTCTTTTTCACATATTTGATGCATTCCCCTAGCTTCTGGAAATGATTAAAATGTAGTATACTTTGGTCATTATCTGACGCGGATTCGTTGGATTATAAATGATAGTTAATTCAGCTTC

Library


Library category	ESTs
watermelon fruit 10d library	6
watermelon fruit 18d library	4
watermelon fruit 26d library	2
watermelon fruit 34d library	1

Homology

[Close]

BLAST of WMU11183 vs. TAIR10
Match: AT2G15430.1 (AT2G15430.1 DNA-directed RNA polymerase family protein)

HSP 1 Score: 260.4 bits (664), Expect = 1.1e-69
Identity = 128/154 (83.12%), Postives = 142/154 (92.21%), Query Frame = 1


Query: 1   RAIARKGIGKDHAKWSPAATVTFMYEPNIHINEDLMETLTLEEKRTWVESCPTRVFELDP 60
           RAIARKGIGKDHAKWSPAATVTFMYEP+I INED+M+TL+ EEK   +ES PT+VF +DP
Sbjct: 166 RAIARKGIGKDHAKWSPAATVTFMYEPDIIINEDMMDTLSDEEKIDLIESSPTKVFGMDP 225

Query: 61  VTHQVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNA 120
           VT QV+VVDPEAYTYD+EVIKKAEAMGK GL++I+ K+DSFIFTVESTGA+KASQL+LNA
Sbjct: 226 VTRQVVVVDPEAYTYDEEVIKKAEAMGKPGLIEISPKDDSFIFTVESTGAVKASQLVLNA 285

Query: 121 IDILKQKLDAVRLSDDTVEADDQFGELGAHMRGG 180
           ID+LKQKLDAVRLSDDTVEADDQFGELGAHMRGG
Sbjct: 286 IDLLKQKLDAVRLSDDTVEADDQFGELGAHMRGG 319

Query: 181  240
           
Sbjct: 346  319

Query: 241  300
           
Sbjct: 406  319

Query: 301  360
           
Sbjct: 466  319

Query: 361  420
           
Sbjct: 526  319

Query: 421  463
           
Sbjct: 586  319

[Close]

BLAST of WMU11183 vs. TAIR10
Match: AT2G15400.1 (AT2G15400.1 DNA-directed RNA polymerase family protein)

HSP 1 Score: 248.4 bits (633), Expect = 4.1e-66
Identity = 122/154 (79.22%), Postives = 138/154 (89.61%), Query Frame = 1


Query: 1   RAIARKGIGKDHAKWSPAATVTFMYEPNIHINEDLMETLTLEEKRTWVESCPTRVFELDP 60
           +A+ARKGIGKDHAKWSPAATVT+MYEP+I INE++M TLT EEK   +ES PT+VF +DP
Sbjct: 166 KALARKGIGKDHAKWSPAATVTYMYEPDIIINEEMMNTLTDEEKIDLIESSPTKVFGIDP 225

Query: 61  VTHQVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNA 120
           VT QV+VVDPEAYTYD+EVIKKAEAMGK GL++I  K DSF+FTVESTGA+KASQL+LNA
Sbjct: 226 VTGQVVVVDPEAYTYDEEVIKKAEAMGKPGLIEIHPKHDSFVFTVESTGALKASQLVLNA 285

Query: 121 IDILKQKLDAVRLSDDTVEADDQFGELGAHMRGG 180
           IDILKQKLDA+RLSD+TVEADDQFGELGAHMR G
Sbjct: 286 IDILKQKLDAIRLSDNTVEADDQFGELGAHMREG 319

Query: 181  240
           
Sbjct: 346  319

Query: 241  300
           
Sbjct: 406  319

Query: 301  360
           
Sbjct: 466  319

Query: 361  420
           
Sbjct: 526  319

Query: 421  463
           
Sbjct: 586  319

[Close]

BLAST of WMU11183 vs. TAIR10
Match: AT1G60850.2 (AT1G60850.2 DNA-directed RNA polymerase family protein)

HSP 1 Score: 66.2 bits (160), Expect = 2.9e-11
Identity = 40/133 (30.08%), Postives = 64/133 (48.12%), Query Frame = 1


Query: 4   AIARKGIGKDHAKWSPAATVTFMYEPNIHINEDLMETLTLEEKRTWVESCPTRVFELDPV 63
           A A KGIGK HAKWSP  T  +   P + +  ++ + L        V  CP  VF+++ +
Sbjct: 247 AHAVKGIGKTHAKWSPVGTAWYRMHPEVVLRGEVEDELA----ERLVNVCPQNVFDIEDM 306

Query: 64  ---THQVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLIL 123
                +  V  P   T   E ++  + +     VD+ + ++ FIF +ESTG++    L  
Sbjct: 307 GKGKKRATVAQPRKCTLCKECVRDDDLVDH---VDLGSVKNHFIFNIESTGSLPPEVLFT 366

Query: 124 NAIDILKQKLDAV 183
            A+ IL+ K +A+
Sbjct: 367 EAVKILEAKCEAI 372

Query: 184  243
           
Sbjct: 427  372

Query: 244  303
           
Sbjct: 487  372

Query: 304  363
           
Sbjct: 547  372

Query: 364  394
           
Sbjct: 607  372

[Close]

BLAST of WMU11183 vs. TAIR10
Match: AT1G60620.1 (AT1G60620.1 RNA polymerase I subunit 43)

HSP 1 Score: 60.1 bits (144), Expect = 2.1e-09
Identity = 42/133 (31.58%), Postives = 64/133 (48.12%), Query Frame = 1


Query: 4   AIARKGIGKDHAKWSPAATVTFMYEPNIHINEDLMETLTLEEKRTWVESCPTRVFELDPV 63
           A A KGIGK HAKWSP AT  +   P +     L++    +     V+ CP +VF+++ +
Sbjct: 254 AHAVKGIGKTHAKWSPVATAWYRMLPEV----VLLKEFEGKHAEELVKVCPKKVFDIEDM 313

Query: 64  ---THQVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLIL 123
                +  V  P   +   E I+  + +     VD+   ++ FIFT+ESTG+     L  
Sbjct: 314 GQGRKRATVARPRDCSLCRECIR--DGVEWEDQVDLRRVKNHFIFTIESTGSQPPEVLFN 373

Query: 124 NAIDILKQKLDAV 183
            A+ IL+ K + V
Sbjct: 374 EAVKILEDKCERV 380

Query: 184  243
           
Sbjct: 434  380

Query: 244  303
           
Sbjct: 494  380

Query: 304  363
           
Sbjct: 554  380

Query: 364  394
           
Sbjct: 614  380

[Close]

BLAST of WMU11183 vs. Swiss-Prot
Match: NRPB3_ARATH (DNA-directed RNA polymerases II, IV and V subunit 3 OS=Arabidopsis thaliana GN=NRPB3 PE=1 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 1.9e-68
Identity = 128/154 (83.12%), Postives = 142/154 (92.21%), Query Frame = 1


Query: 1   RAIARKGIGKDHAKWSPAATVTFMYEPNIHINEDLMETLTLEEKRTWVESCPTRVFELDP 60
           RAIARKGIGKDHAKWSPAATVTFMYEP+I INED+M+TL+ EEK   +ES PT+VF +DP
Sbjct: 166 RAIARKGIGKDHAKWSPAATVTFMYEPDIIINEDMMDTLSDEEKIDLIESSPTKVFGMDP 225

Query: 61  VTHQVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNA 120
           VT QV+VVDPEAYTYD+EVIKKAEAMGK GL++I+ K+DSFIFTVESTGA+KASQL+LNA
Sbjct: 226 VTRQVVVVDPEAYTYDEEVIKKAEAMGKPGLIEISPKDDSFIFTVESTGAVKASQLVLNA 285

Query: 121 IDILKQKLDAVRLSDDTVEADDQFGELGAHMRGG 180
           ID+LKQKLDAVRLSDDTVEADDQFGELGAHMRGG
Sbjct: 286 IDLLKQKLDAVRLSDDTVEADDQFGELGAHMRGG 319

Query: 181  240
           
Sbjct: 346  319

Query: 241  300
           
Sbjct: 406  319

Query: 301  360
           
Sbjct: 466  319

Query: 361  420
           
Sbjct: 526  319

Query: 421  463
           
Sbjct: 586  319

[Close]

BLAST of WMU11183 vs. Swiss-Prot
Match: RPD3B_ARATH (DNA-directed RNA polymerases IV and V subunit 3B OS=Arabidopsis thaliana GN=NRPD3B PE=1 SV=2)

HSP 1 Score: 248.4 bits (633), Expect = 7.4e-65
Identity = 122/154 (79.22%), Postives = 138/154 (89.61%), Query Frame = 1


Query: 1   RAIARKGIGKDHAKWSPAATVTFMYEPNIHINEDLMETLTLEEKRTWVESCPTRVFELDP 60
           +A+ARKGIGKDHAKWSPAATVT+MYEP+I INE++M TLT EEK   +ES PT+VF +DP
Sbjct: 166 KALARKGIGKDHAKWSPAATVTYMYEPDIIINEEMMNTLTDEEKIDLIESSPTKVFGIDP 225

Query: 61  VTHQVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNA 120
           VT QV+VVDPEAYTYD+EVIKKAEAMGK GL++I  K DSF+FTVESTGA+KASQL+LNA
Sbjct: 226 VTGQVVVVDPEAYTYDEEVIKKAEAMGKPGLIEIHPKHDSFVFTVESTGALKASQLVLNA 285

Query: 121 IDILKQKLDAVRLSDDTVEADDQFGELGAHMRGG 180
           IDILKQKLDA+RLSD+TVEADDQFGELGAHMR G
Sbjct: 286 IDILKQKLDAIRLSDNTVEADDQFGELGAHMREG 319

Query: 181  240
           
Sbjct: 346  319

Query: 241  300
           
Sbjct: 406  319

Query: 301  360
           
Sbjct: 466  319

Query: 361  420
           
Sbjct: 526  319

Query: 421  463
           
Sbjct: 586  319

[Close]

BLAST of WMU11183 vs. Swiss-Prot
Match: RPB3_DICDI (DNA-directed RNA polymerase II subunit rpb3 OS=Dictyostelium discoideum GN=polr2c PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 3.8e-29
Identity = 63/134 (47.01%), Postives = 89/134 (66.42%), Query Frame = 1


Query: 1   RAIARKGIGKDHAKWSPAATVTFMYEPNIHINEDLMETLTLEEKRTWVESCPTRVFELDP 60
           RAIA+KG+GK+HAKWSP+   T+ ++P I +N++ ++ LT ++K  WV SCPT+V+   P
Sbjct: 161 RAIAKKGVGKEHAKWSPSCVATYQFQPIIVLNQNRIDELTDQQKEEWVGSCPTKVYSYSP 220

Query: 61  --VTHQVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLIL 120
              T QV + DP    Y  E  KKAE+ GK  LV +  K+D FIFTVES+GA+K   ++L
Sbjct: 221 HQSTQQVTIEDPLRCVYCLECKKKAESFGKPDLVHLEQKQDKFIFTVESSGALKPEDIVL 280

Query: 121 NAIDILKQKLDAVR 180
            AI I+K+KL  ++
Sbjct: 281 YAIQIIKRKLTDIQ 294

Query: 181  240
           
Sbjct: 341  294

Query: 241  300
           
Sbjct: 401  294

Query: 301  360
           
Sbjct: 461  294

Query: 361  397
           
Sbjct: 521  294

[Close]

BLAST of WMU11183 vs. Swiss-Prot
Match: CNJC_TETTH (Conjugation stage-specific protein OS=Tetrahymena thermophila GN=CNJC PE=2 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 4.7e-19
Identity = 52/130 (40.00%), Postives = 77/130 (59.23%), Query Frame = 1


Query: 10  ARKGIGKDHAKWSPAATVTFMYEPNIHINEDLMETLTLEEKRTWVESCPTRVFELDPVTH 69
           A+KGIGK H+KW+P    TF  EP I  ++++ + L +E+K+  V +CPT+VF ++P T+
Sbjct: 166 AQKGIGKMHSKWNPVCISTFSVEPEIIFDQEI-QNLDIEQKKALVNACPTKVFGINPHTN 225

Query: 70  QVMVVDPEAYTYDDE-VIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAID 129
            + V D     Y +E V K AE   K  L+ I  K+D F F VE+TG +K  +++     
Sbjct: 226 TLEVQDHMKCMYCEECVYKCAEDFQKPKLIKIDHKKDKFFFKVETTGVMKPVEVLRRGFS 285

Query: 130 ILKQKLDAVR 189
            L+QKLD +R
Sbjct: 286 TLRQKLDFMR 294

Query: 190  249
           
Sbjct: 346  294

Query: 250  309
           
Sbjct: 406  294

Query: 310  369
           
Sbjct: 466  294

Query: 370  397
           
Sbjct: 526  294

[Close]

BLAST of WMU11183 vs. Swiss-Prot
Match: RPOD_METTH (DNA-directed RNA polymerase subunit D OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=rpoD PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.4e-10
Identity = 39/130 (30.00%), Postives = 64/130 (49.23%), Query Frame = 1


Query: 4   AIARKGIGKDHAKWSPAATVTFMYEPNIHINEDLMETLTLEEKRTWVESCPTRVFELDPV 63
           A+A+ G+G++HAKW P     + Y P I  +ED  E L        +E+CP  V  L   
Sbjct: 140 AVAQLGVGREHAKWEPTTACAYKYYPRIEFSEDCDECLEC------IEACPRDV--LGEE 199

Query: 64  THQVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAI 123
           + + +VVD E  +     ++  +       +D+  +E  FIF +E+ G++    ++L A 
Sbjct: 200 SGKPVVVDLENCSMCKSCVRACDKRA----IDVGYEEGKFIFRIETDGSVDPKDVLLKAC 257

Query: 124 DILKQKLDAV 183
           DIL+ K + V
Sbjct: 260 DILRDKAEQV 257

Query: 184  243
           
Sbjct: 320  257

Query: 244  303
           
Sbjct: 380  257

Query: 304  363
           
Sbjct: 440  257

Query: 364  394
           
Sbjct: 500  257

[Close]

BLAST of WMU11183 vs. TrEMBL
Match: A0A0A0LHS1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G093850 PE=4 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 4.8e-79
Identity = 151/154 (98.05%), Postives = 153/154 (99.35%), Query Frame = 1


Query: 1   RAIARKGIGKDHAKWSPAATVTFMYEPNIHINEDLMETLTLEEKRTWVESCPTRVFELDP 60
           RAIARKGIGKDHAKWSPAATVTFMYEP+IHINEDLMETLTLEEKRTWVESCPTRVFELD 
Sbjct: 167 RAIARKGIGKDHAKWSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDT 226

Query: 61  VTHQVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNA 120
           VTHQVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITA+EDSFIFTVESTGAIKASQLILNA
Sbjct: 227 VTHQVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNA 286

Query: 121 IDILKQKLDAVRLSDDTVEADDQFGELGAHMRGG 180
           IDILKQKLDAVRLSDDTVEADDQFGELGAHMRGG
Sbjct: 287 IDILKQKLDAVRLSDDTVEADDQFGELGAHMRGG 320

Query: 181  240
           
Sbjct: 347  320

Query: 241  300
           
Sbjct: 407  320

Query: 301  360
           
Sbjct: 467  320

Query: 361  420
           
Sbjct: 527  320

Query: 421  463
           
Sbjct: 587  320

[Close]

BLAST of WMU11183 vs. TrEMBL
Match: Q2MGQ5_MEDTR (RNA polymerase, dimerisation OS=Medicago truncatula GN=MTR_4g084150 PE=4 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 3.3e-72
Identity = 135/154 (87.66%), Postives = 150/154 (97.40%), Query Frame = 1


Query: 1   RAIARKGIGKDHAKWSPAATVTFMYEPNIHINEDLMETLTLEEKRTWVESCPTRVFELDP 60
           RAIARKGIGKDHAKWSPAATVTFMYEP+IHINEDLME+LTLEEK+ WV+S PTRVF++DP
Sbjct: 165 RAIARKGIGKDHAKWSPAATVTFMYEPDIHINEDLMESLTLEEKKEWVDSSPTRVFDIDP 224

Query: 61  VTHQVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNA 120
           VT QVMVVDPEAY+YDDEVIKKAEAMGK GL++ITAK+DSFIFTVESTGA+KASQL+LN+
Sbjct: 225 VTQQVMVVDPEAYSYDDEVIKKAEAMGKPGLIEITAKQDSFIFTVESTGAVKASQLLLNS 284

Query: 121 IDILKQKLDAVRLSDDTVEADDQFGELGAHMRGG 180
           I+ILKQKLDAVRLS+DTVEADDQFGELGAHMRGG
Sbjct: 285 IEILKQKLDAVRLSEDTVEADDQFGELGAHMRGG 318

Query: 181  240
           
Sbjct: 345  318

Query: 241  300
           
Sbjct: 405  318

Query: 301  360
           
Sbjct: 465  318

Query: 361  420
           
Sbjct: 525  318

Query: 421  463
           
Sbjct: 585  318

[Close]

BLAST of WMU11183 vs. TrEMBL
Match: I3SL97_MEDTR (Uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 3.3e-72
Identity = 135/154 (87.66%), Postives = 150/154 (97.40%), Query Frame = 1


Query: 1   RAIARKGIGKDHAKWSPAATVTFMYEPNIHINEDLMETLTLEEKRTWVESCPTRVFELDP 60
           RAIARKGIGKDHAKWSPAATVTFMYEP+IHINEDLME+LTLEEK+ WV+S PTRVF++DP
Sbjct: 165 RAIARKGIGKDHAKWSPAATVTFMYEPDIHINEDLMESLTLEEKKEWVDSSPTRVFDIDP 224

Query: 61  VTHQVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNA 120
           VT QVMVVDPEAY+YDDEVIKKAEAMGK GL++ITAK+DSFIFTVESTGA+KASQL+LN+
Sbjct: 225 VTQQVMVVDPEAYSYDDEVIKKAEAMGKPGLIEITAKQDSFIFTVESTGAVKASQLLLNS 284

Query: 121 IDILKQKLDAVRLSDDTVEADDQFGELGAHMRGG 180
           I+ILKQKLDAVRLS+DTVEADDQFGELGAHMRGG
Sbjct: 285 IEILKQKLDAVRLSEDTVEADDQFGELGAHMRGG 318

Query: 181  240
           
Sbjct: 345  318

Query: 241  300
           
Sbjct: 405  318

Query: 301  360
           
Sbjct: 465  318

Query: 361  420
           
Sbjct: 525  318

Query: 421  463
           
Sbjct: 585  318

[Close]

BLAST of WMU11183 vs. TrEMBL
Match: A0A0R4J3R4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_07G220900 PE=4 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 4.3e-72
Identity = 137/154 (88.96%), Postives = 147/154 (95.45%), Query Frame = 1


Query: 1   RAIARKGIGKDHAKWSPAATVTFMYEPNIHINEDLMETLTLEEKRTWVESCPTRVFELDP 60
           RAIARKGIGKDHAKWSPAATVTFMYEP IHINEDLMETLTLEEKR WV+S PTRVFE+DP
Sbjct: 166 RAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMETLTLEEKREWVDSSPTRVFEIDP 225

Query: 61  VTHQVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNA 120
           VT QVMVVD EAYTYDDEV+KKAEAMGK GLV+I A++DSFIFTVESTGA+KASQL+LNA
Sbjct: 226 VTQQVMVVDAEAYTYDDEVLKKAEAMGKPGLVEIIARQDSFIFTVESTGAVKASQLVLNA 285

Query: 121 IDILKQKLDAVRLSDDTVEADDQFGELGAHMRGG 180
           I+ILKQKLDAVRLS+DTVEADDQFGELGAHMRGG
Sbjct: 286 IEILKQKLDAVRLSEDTVEADDQFGELGAHMRGG 319

Query: 181  240
           
Sbjct: 346  319

Query: 241  300
           
Sbjct: 406  319

Query: 301  360
           
Sbjct: 466  319

Query: 361  420
           
Sbjct: 526  319

Query: 421  463
           
Sbjct: 586  319

[Close]

BLAST of WMU11183 vs. TrEMBL
Match: A0A0B2S8H4_GLYSO (DNA-directed RNA polymerase II subunit RPB3-A OS=Glycine soja GN=glysoja_007521 PE=4 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 4.3e-72
Identity = 137/154 (88.96%), Postives = 147/154 (95.45%), Query Frame = 1


Query: 1   RAIARKGIGKDHAKWSPAATVTFMYEPNIHINEDLMETLTLEEKRTWVESCPTRVFELDP 60
           RAIARKGIGKDHAKWSPAATVTFMYEP IHINEDLMETLTLEEKR WV+S PTRVFE+DP
Sbjct: 166 RAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMETLTLEEKREWVDSSPTRVFEIDP 225

Query: 61  VTHQVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNA 120
           VT QVMVVD EAYTYDDEV+KKAEAMGK GLV+I A++DSFIFTVESTGA+KASQL+LNA
Sbjct: 226 VTQQVMVVDAEAYTYDDEVLKKAEAMGKPGLVEIIARQDSFIFTVESTGAVKASQLVLNA 285

Query: 121 IDILKQKLDAVRLSDDTVEADDQFGELGAHMRGG 180
           I+ILKQKLDAVRLS+DTVEADDQFGELGAHMRGG
Sbjct: 286 IEILKQKLDAVRLSEDTVEADDQFGELGAHMRGG 319

Query: 181  240
           
Sbjct: 346  319

Query: 241  300
           
Sbjct: 406  319

Query: 301  360
           
Sbjct: 466  319

Query: 361  420
           
Sbjct: 526  319

Query: 421  463
           
Sbjct: 586  319

[Close]

BLAST of WMU11183 vs. NCBI nr
Match: gi|449442251|ref|XP_004138895.1| (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3 [Cucumis sativus])

HSP 1 Score: 301.6 bits (771), Expect = 1.2e-78
Identity = 151/154 (98.05%), Postives = 153/154 (99.35%), Query Frame = 1


Query: 1   RAIARKGIGKDHAKWSPAATVTFMYEPNIHINEDLMETLTLEEKRTWVESCPTRVFELDP 60
           RAIARKGIGKDHAKWSPAATVTFMYEP+IHINEDLMETLTLEEKRTWVESCPTRVFELD 
Sbjct: 167 RAIARKGIGKDHAKWSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDT 226

Query: 61  VTHQVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNA 120
           VTHQVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITA+EDSFIFTVESTGAIKASQLILNA
Sbjct: 227 VTHQVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNA 286

Query: 121 IDILKQKLDAVRLSDDTVEADDQFGELGAHMRGG 180
           IDILKQKLDAVRLSDDTVEADDQFGELGAHMRGG
Sbjct: 287 IDILKQKLDAVRLSDDTVEADDQFGELGAHMRGG 320

Query: 181  240
           
Sbjct: 347  320

Query: 241  300
           
Sbjct: 407  320

Query: 301  360
           
Sbjct: 467  320

Query: 361  420
           
Sbjct: 527  320

Query: 421  463
           
Sbjct: 587  320

[Close]

BLAST of WMU11183 vs. NCBI nr
Match: gi|659082285|ref|XP_008441761.1| (PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerases II, IV and V subunit 3-like [Cucumis melo])

HSP 1 Score: 300.8 bits (769), Expect = 2.0e-78
Identity = 150/154 (97.40%), Postives = 153/154 (99.35%), Query Frame = 1


Query: 1   RAIARKGIGKDHAKWSPAATVTFMYEPNIHINEDLMETLTLEEKRTWVESCPTRVFELDP 60
           RAIARKGIGKDHAKWSPAATVTFMYEP+IHINEDLMETLTLEEK TWVESCPTRVFELDP
Sbjct: 167 RAIARKGIGKDHAKWSPAATVTFMYEPSIHINEDLMETLTLEEKXTWVESCPTRVFELDP 226

Query: 61  VTHQVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNA 120
           VTHQVMVV+PEAYTYDDEVIKKAEAMGKAGLVDITA+EDSFIFTVESTGAIKASQLILNA
Sbjct: 227 VTHQVMVVEPEAYTYDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNA 286

Query: 121 IDILKQKLDAVRLSDDTVEADDQFGELGAHMRGG 180
           IDILKQKLDAVRLSDDTVEADDQFGELGAHMRGG
Sbjct: 287 IDILKQKLDAVRLSDDTVEADDQFGELGAHMRGG 320

Query: 181  240
           
Sbjct: 347  320

Query: 241  300
           
Sbjct: 407  320

Query: 301  360
           
Sbjct: 467  320

Query: 361  420
           
Sbjct: 527  320

Query: 421  463
           
Sbjct: 587  320

[Close]

BLAST of WMU11183 vs. NCBI nr
Match: gi|502143329|ref|XP_004505300.1| (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3-like [Cicer arietinum])

HSP 1 Score: 281.6 bits (719), Expect = 1.3e-72
Identity = 138/154 (89.61%), Postives = 150/154 (97.40%), Query Frame = 1


Query: 1   RAIARKGIGKDHAKWSPAATVTFMYEPNIHINEDLMETLTLEEKRTWVESCPTRVFELDP 60
           RAIARKGIGKDHAKWSPAATVTFMYEP+IHINEDLME+LTLEEKR WV+S PTRVF++DP
Sbjct: 166 RAIARKGIGKDHAKWSPAATVTFMYEPDIHINEDLMESLTLEEKREWVDSSPTRVFDIDP 225

Query: 61  VTHQVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNA 120
           VT QVMVVDPEAY+YDDEVIKKAEAMGK GLV+ITAK+DSFIFTVESTGA+KASQL+LNA
Sbjct: 226 VTQQVMVVDPEAYSYDDEVIKKAEAMGKPGLVEITAKQDSFIFTVESTGAVKASQLLLNA 285

Query: 121 IDILKQKLDAVRLSDDTVEADDQFGELGAHMRGG 180
           I+ILKQKLDAVRLS+DTVEADDQFGELGAHMRGG
Sbjct: 286 IEILKQKLDAVRLSEDTVEADDQFGELGAHMRGG 319

Query: 181  240
           
Sbjct: 346  319

Query: 241  300
           
Sbjct: 406  319

Query: 301  360
           
Sbjct: 466  319

Query: 361  420
           
Sbjct: 526  319

Query: 421  463
           
Sbjct: 586  319

[Close]

BLAST of WMU11183 vs. NCBI nr
Match: gi|357475219|ref|XP_003607895.1| (RPB3 DNA-directed RNA polymerase II subunit 3 [Medicago truncatula])

HSP 1 Score: 278.9 bits (712), Expect = 8.1e-72
Identity = 135/154 (87.66%), Postives = 150/154 (97.40%), Query Frame = 1


Query: 1   RAIARKGIGKDHAKWSPAATVTFMYEPNIHINEDLMETLTLEEKRTWVESCPTRVFELDP 60
           RAIARKGIGKDHAKWSPAATVTFMYEP+IHINEDLME+LTLEEK+ WV+S PTRVF++DP
Sbjct: 165 RAIARKGIGKDHAKWSPAATVTFMYEPDIHINEDLMESLTLEEKKEWVDSSPTRVFDIDP 224

Query: 61  VTHQVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNA 120
           VT QVMVVDPEAY+YDDEVIKKAEAMGK GL++ITAK+DSFIFTVESTGA+KASQL+LN+
Sbjct: 225 VTQQVMVVDPEAYSYDDEVIKKAEAMGKPGLIEITAKQDSFIFTVESTGAVKASQLLLNS 284

Query: 121 IDILKQKLDAVRLSDDTVEADDQFGELGAHMRGG 180
           I+ILKQKLDAVRLS+DTVEADDQFGELGAHMRGG
Sbjct: 285 IEILKQKLDAVRLSEDTVEADDQFGELGAHMRGG 318

Query: 181  240
           
Sbjct: 345  318

Query: 241  300
           
Sbjct: 405  318

Query: 301  360
           
Sbjct: 465  318

Query: 361  420
           
Sbjct: 525  318

Query: 421  463
           
Sbjct: 585  318

[Close]

BLAST of WMU11183 vs. NCBI nr
Match: gi|388505946|gb|AFK41039.1| (unknown [Medicago truncatula])

HSP 1 Score: 278.9 bits (712), Expect = 8.1e-72
Identity = 135/154 (87.66%), Postives = 150/154 (97.40%), Query Frame = 1


Query: 1   RAIARKGIGKDHAKWSPAATVTFMYEPNIHINEDLMETLTLEEKRTWVESCPTRVFELDP 60
           RAIARKGIGKDHAKWSPAATVTFMYEP+IHINEDLME+LTLEEK+ WV+S PTRVF++DP
Sbjct: 165 RAIARKGIGKDHAKWSPAATVTFMYEPDIHINEDLMESLTLEEKKEWVDSSPTRVFDIDP 224

Query: 61  VTHQVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNA 120
           VT QVMVVDPEAY+YDDEVIKKAEAMGK GL++ITAK+DSFIFTVESTGA+KASQL+LN+
Sbjct: 225 VTQQVMVVDPEAYSYDDEVIKKAEAMGKPGLIEITAKQDSFIFTVESTGAVKASQLLLNS 284

Query: 121 IDILKQKLDAVRLSDDTVEADDQFGELGAHMRGG 180
           I+ILKQKLDAVRLS+DTVEADDQFGELGAHMRGG
Sbjct: 285 IEILKQKLDAVRLSEDTVEADDQFGELGAHMRGG 318

Query: 181  240
           
Sbjct: 345  318

Query: 241  300
           
Sbjct: 405  318

Query: 301  360
           
Sbjct: 465  318

Query: 361  420
           
Sbjct: 525  318

Query: 421  463
           
Sbjct: 585  318

The following BLAST results are available for this feature:

BLAST of WMU11183 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G15430.1	1.1e-69	83.12	DNA-directed RNA polymerase family protein	[more]
AT2G15400.1	4.1e-66	79.22	DNA-directed RNA polymerase family protein	[more]
AT1G60850.2	2.9e-11	30.08	DNA-directed RNA polymerase family protein	[more]
AT1G60620.1	2.1e-09	31.58	RNA polymerase I subunit 43	[more]

BLAST of WMU11183 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NRPB3_ARATH	1.9e-68	83.12	DNA-directed RNA polymerases II, IV and V subunit 3 OS=Arabidopsis thaliana GN=N...	[more]
RPD3B_ARATH	7.4e-65	79.22	DNA-directed RNA polymerases IV and V subunit 3B OS=Arabidopsis thaliana GN=NRPD...	[more]
RPB3_DICDI	3.8e-29	47.01	DNA-directed RNA polymerase II subunit rpb3 OS=Dictyostelium discoideum GN=polr2...	[more]
CNJC_TETTH	4.7e-19	40.00	Conjugation stage-specific protein OS=Tetrahymena thermophila GN=CNJC PE=2 SV=1	[more]
RPOD_METTH	1.4e-10	30.00	DNA-directed RNA polymerase subunit D OS=Methanothermobacter thermautotrophicus ...	[more]

BLAST of WMU11183 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LHS1_CUCSA	4.8e-79	98.05	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G093850 PE=4 SV=1	[more]
Q2MGQ5_MEDTR	3.3e-72	87.66	RNA polymerase, dimerisation OS=Medicago truncatula GN=MTR_4g084150 PE=4 SV=1	[more]
I3SL97_MEDTR	3.3e-72	87.66	Uncharacterized protein OS=Medicago truncatula PE=2 SV=1	[more]
A0A0R4J3R4_SOYBN	4.3e-72	88.96	Uncharacterized protein OS=Glycine max GN=GLYMA_07G220900 PE=4 SV=1	[more]
A0A0B2S8H4_GLYSO	4.3e-72	88.96	DNA-directed RNA polymerase II subunit RPB3-A OS=Glycine soja GN=glysoja_007521 ...	[more]

BLAST of WMU11183 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449442251\|ref\|XP_004138895.1\|	1.2e-78	98.05	PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3 [Cucumis sativus]	[more]
gi\|659082285\|ref\|XP_008441761.1\|	2.0e-78	97.40	PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerases II, IV and V subuni...	[more]
gi\|502143329\|ref\|XP_004505300.1\|	1.3e-72	89.61	PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3-like [Cicer ariet...	[more]
gi\|357475219\|ref\|XP_003607895.1\|	8.1e-72	87.66	RPB3 DNA-directed RNA polymerase II subunit 3 [Medicago truncatula]	[more]
gi\|388505946\|gb\|AFK41039.1\|	8.1e-72	87.66	unknown [Medicago truncatula]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR009025	RBP11-like_dimer

Vocabulary: **Biological Process**
Term	Definition
GO:0006351	transcription, DNA-templated

Vocabulary: **Molecular Function**
Term	Definition
GO:0046983	protein dimerization activity

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
molecular_function	GO:0046983	protein dimerization activity

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla002053	Cla002053	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S1_0000919	S1_0000919	EST
S1_0010773	S1_0010773	EST
S1_0022935	S1_0022935	EST
S1_0083003	S1_0083003	EST
S1_0086880	S1_0086880	EST
S1_0138412	S1_0138412	EST
S2_0046764	S2_0046764	EST
S2_0060977	S2_0060977	EST
S2_0170079	S2_0170079	EST
S2_0181099	S2_0181099	EST
S3_0051656	S3_0051656	EST
S3_0123666	S3_0123666	EST
S4_0066680	S4_0066680	EST

InterPro

Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009025	DNA-directed RNA polymerase, RBP11-like dimerisation domain	PFAM	PF01193	RNA_pol_L	coord: 61..128 score: 3.
IPR009025	DNA-directed RNA polymerase, RBP11-like dimerisation domain	unknown	SSF55257	RBP11-like subunits of RNA polymerase	coord: 48..136 score: 1.41
None	No IPR available	GENE3D	G3DSA:3.30.1360.10		coord: 5..132 score: 3.9
None	No IPR available	PANTHER	PTHR11800	DNA-DIRECTED RNA POLYMERASE	coord: 1..152 score: 4.8