ClCG11G007460 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG11G007460
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	DNA-directed RNA polymerase II subunit, putative
Location	CG_Chr11 : 9672900 .. 9676206 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTGACTGTCTCGTCGATAAACCCTCGAAAGAGAGTGAGCTAGAACGACAGAGGTGGGAGACATGGAAGGGAGTTCGTACCAGCGGTTTCCAAAGGTGAAAATCCGGGAACTCCGAGATGATTACGCCAAATTCGAGCTCCGCGACACCGACGCCAGCATGGCCAACGCCCTCCGTCGCGTCATGATCGCCGAGGTGCCCACCATCGCCATTGACCTGGTAGAAATTGAAGTGAACTCTTCTGTTCTCAACGACGAGTTCATCGCTCATCGCCTTGGTCTCATTCCTCTCACCAGCGAGCGTGCCATGTCCATGCGCTTCTCTCGCGACTGTGATGCTTGCGATGGTGATGGCCAGTGCGAGTTTTGCTCTGTTGAGTTTCACCTTCGTGCCAAGTGCCACTCCGACCAAACCCTAGACGTCACCAGCAAGGATCTCTATAGTTCTGATCACACTGTTGTCCCCGTTGATTTCTCTGATTCTGCTGCAGCTAGTGGTGAAGCGTTGGATACCAAGTATGTCCTCTTACTCTCGTCTCTCAGACGTGTTTATTCTTGCCATTTTCTCGGCACGATTAAGTTGTTTGGCTTGTTGCTGATTATTGCATTAGTTTGTGTAGCTCTAGGTGTGATCTGTAATGTTTAGTCTACAACTCCATTTGCTATTCGGGTTACAAATGGAGGTTGAGGCTTAGGGGATTACACATCTTAGAGATAGACCATCACTAAAGCTCGGTCTCCAAAGTTCTAATTTGTTATTTCTATGCAACATTCCAACATGTTTGAGAACAATATCGTTTTAGTTTGGTGTCATTGTGGTTCATTAAGTAATTGCTCCAAAATTTGAGCTGGTTTTGTGATGATTGTAGAGGAATAATCATTGTGAAGCTACGTCGTGGTCAAGAGTTGCGGCTGAGAGCCATAGCTAGGAAGGGCATTGGTAAAGATCATGCAAAATGGTCGCCTGCAGCAACCGTGACATTCATGTATGAGCCAAACATTCACATCAATGAAGACCTAATGGAAACATTAACCCTAGAGGAAAAGAGAACTTGGGTTGAAAGTTGCCCAACCAGAGTATTTGAATTGGATCCTGTTACTCATCAGGTTCTTCTCATACAACCTCATTTTCTTTTTCTTCTTATTTGTTGCTTTACTACAATTATGCAATTGCTCAGAGGGTTGTGTTGAAGAGGTGATGTGGACGTTATTTGTCCTCCAACTGTATGTTGTTTAGAGTTACCAGATACGCCCCCCCCCCACAAAAAAAAAAAAAAAAAAAAAAAAGAAAATGATTGTCTTGGCAATTTCCTTCCACGGGCTAGAAGAACCTCTCCAAGTTTTGGAATTGATGAAGCCTCTGAAGGAGTCAACATCATGTTTGCTTTTCACGACCAACCTCCAAAAAGCGTTCATTTCATGTTCAAATCAACATAACCAGGTAAAAAGAATTCTCAAAATGAAGATTTTCCACTCCCAAACCTCCCAAGGAATGATGAGTCATGATCCCATTCCAATCTGACTAAATTGCAGCTTCCAACTCCTTGCAACTAGCTTCTATGTTTTCTCACTCTTCTGTTGATAATCGTCCTTCCGAAGGTTGTTTCGACTCAGCAAATGAGATATTTAAAGAGAAGGTGTCTTGAGATGATTTTGAGGAGTCTAATAAGGAGCCTATGGTAAGTTTTAGGCTTTAGTCGTGAAGACTTGGATCAGAATGTTTCGTTTTTCATTGGAAACAGTGAAGCTCTGAAGCTCCTGAAGAGGATTTTAATGATGAAGCTATTGGATAGGCTTTAAGCCTAAGTCTTCTCCAAATCTTCAAGCATCTTCTTCGAGAAGTGCTCTTATTTTCTTAAAGTTCGTGAATTTGAAGTGTGAGATTCGTACAAGAGCCGCTTGTCAAGGCGTTTAAGTCTCTTAATCTATAAGGCTTTTTGGTTGCAGCTGGTTTTGTGTTGTTTATTCTACTCCAGTTATGGTACTCTTAAGGTGTTTAAGTGCTCTTATTTCATTTGTTTATGTTCTTGGTGGCTCCAATTCAGACATGTCTTCCTTCCTTGTGGTTGGTTTTTTATGGGGCTTGCATTTATAGTATTTTCCCCCATGGTTGGCTGTTTAGTTATTTTGTAGCCTATTTTGGTTTCTTTCTTTCTTTCTTTTATTTTTAAAATGTAATTGCTTCCTGTTATCTTTTCTTGTTTGGTTCCTTCGTTCTTTTTCGCATTTTTTTGATTTCTCCCTCATATTTTATGTATAACCTGAATGGTGTAAAATTTTAGGAGTGCCAATGAATTAGATTTTTTTCATTTAGTTGTATCAACATCCAAATTTTAAGATATTTTGCCAATGGCTAAAGATAGTACAAATTATCCAAACTTAAAATTATCTTGTTTCTGATAGCTAATATATATTCATTTGTGTTTTCTGTCTGTCTTTATGCTGAATTCTTGTTGCTCATTTTGTTCGTAAAGGTTATGGTGGTTGATCCTGAGGCATACACTTATGATGATGAGGTGATTAAGAAAGCAGAAGCTATGGGTAAAGCTGGACTAGTGGATATTACTGCAAAAGAAGATAGTTTTATCTTCACAGTTGAATCTACCGGTGCAATCAAAGCTTCCCAGTTGATACTCAATGCCATAGATATCCTGAAACAGAAGCTGGATGCAGTCCGTCTTTCAGACGATACTGTAGAAGCAGATGATCAGTTTGGTGAGTTAGGTGCACATATGCGAGGTGGATGATCCAAATACCAGCCTTACCCATATGTTTGTAGGAGGTGAGACTAACTTGAATTTTGTTTTCTGGACAATCTGGTTTTTTGTATGAATGAACTTGGTTTAGTGCAGTCTTTTTCACATATTTGATGCATTCCCCTAGCTTCTGGAAATGATTAAAATGTAGTATCTTTGGCATTATCTGACACGGATTCGTGGATTATAAATGATAGTTAATTCAGCTTCTACTATCTTCAGGCAATGCTTTGATTATTAATTTTTCCAGGGCTGCTTCCTGGTGCAGTTTTTGCTGTCTTTTAAGCGATATGGTGACTTGCCCCAAGGGTTGATATTGGAACAAGACGTCACCCATGGTGAAAAAACTATTTGTTGTTGGGTATCTTTAGGGGTAGAAGATTGACATCAAACATTTGCATTGAAGTTTGGATAATTGTTTTAATGCATATTTAGGATTTTGAAAATGATAAAAGTGATTTTAGCTATTTTAAAGTCACTCTCGAATATGTACTGTATATGTGGGATTGATCCATTGAACAACATTAGAAGAAACTTTGAATTTACTCCTAAG

mRNA sequence

GGTGACTGTCTCGTCGATAAACCCTCGAAAGAGAGTGAGCTAGAACGACAGAGGTGGGAGACATGGAAGGGAGTTCGTACCAGCGGTTTCCAAAGGTGAAAATCCGGGAACTCCGAGATGATTACGCCAAATTCGAGCTCCGCGACACCGACGCCAGCATGGCCAACGCCCTCCGTCGCGTCATGATCGCCGAGGTGCCCACCATCGCCATTGACCTGGTAGAAATTGAAGTGAACTCTTCTGTTCTCAACGACGAGTTCATCGCTCATCGCCTTGGTCTCATTCCTCTCACCAGCGAGCGTGCCATGTCCATGCGCTTCTCTCGCGACTGTGATGCTTGCGATGGTGATGGCCAGTGCGAGTTTTGCTCTGTTGAGTTTCACCTTCGTGCCAAGTGCCACTCCGACCAAACCCTAGACGTCACCAGCAAGGATCTCTATAGTTCTGATCACACTGTTGTCCCCGTTGATTTCTCTGATTCTGCTGCAGCTAGTGGTGAAGCGTTGGATACCAAAGGAATAATCATTGTGAAGCTACGTCGTGGTCAAGAGTTGCGGCTGAGAGCCATAGCTAGGAAGGGCATTGGTAAAGATCATGCAAAATGGTCGCCTGCAGCAACCGTGACATTCATGTATGAGCCAAACATTCACATCAATGAAGACCTAATGGAAACATTAACCCTAGAGGAAAAGAGAACTTGGGTTGAAAGTTGCCCAACCAGAGTATTTGAATTGGATCCTGTTACTCATCAGGTTGTTTCGACTCAGCAAATGAGATATTTAAAGAGAAGGTGTCTTGAGATGATTTTGAGGAGTCTAATAAGGAGCCTATGCTATTGGATAGGCTTTAAGCCTAAGTCTTCTCCAAATCTTCAAGCATCTTCTTCGAGAAGTGCTCTTATTTTCTTAAACTGGTTTTGTGTTGTTTATTCTACTCCAGTTATGGTACTCTTAAGGTGTTTAAGTGCTCTTATTTCATTTGTTTATGTTCTTGGTGGCTCCAATTCAGACATGTCTTCCTTCCTTGTGGTTATGGTGGTTGATCCTGAGGCATACACTTATGATGATGAGGTGATTAAGAAAGCAGAAGCTATGGGTAAAGCTGGACTAGTGGATATTACTGCAAAAGAAGATAGTTTTATCTTCACAGTTGAATCTACCGGTGCAATCAAAGCTTCCCAGTTGATACTCAATGCCATAGATATCCTGAAACAGAAGCTGGATGCAGTCCGTCTTTCAGACGATACTGTAGAAGCAGATGATCAGTTTGGTGAGTTAGGTGCACATATGCGAGGTGGATGATCCAAATACCAGCCTTACCCATATGTTTGTAGGAGGGCTGCTTCCTGGTGCAGTTTTTGCTGTCTTTTAAGCGATATGGTGACTTGCCCCAAGGGTTGATATTGGAACAAGACGTCACCCATGGTGAAAAAACTATTTGTTGTTGGGTATCTTTAGGGGTAGAAGATTGACATCAAACATTTGCATTGAAGTTTGGATAATTGTTTTAATGCATATTTAGGATTTTGAAAATGATAAAAGTGATTTTAGCTATTTTAAAGTCACTCTCGAATATGTACTGTATATGTGGGATTGATCCATTGAACAACATTAGAAGAAACTTTGAATTTACTCCTAAG

Coding sequence (CDS)

ATGGAAGGGAGTTCGTACCAGCGGTTTCCAAAGGTGAAAATCCGGGAACTCCGAGATGATTACGCCAAATTCGAGCTCCGCGACACCGACGCCAGCATGGCCAACGCCCTCCGTCGCGTCATGATCGCCGAGGTGCCCACCATCGCCATTGACCTGGTAGAAATTGAAGTGAACTCTTCTGTTCTCAACGACGAGTTCATCGCTCATCGCCTTGGTCTCATTCCTCTCACCAGCGAGCGTGCCATGTCCATGCGCTTCTCTCGCGACTGTGATGCTTGCGATGGTGATGGCCAGTGCGAGTTTTGCTCTGTTGAGTTTCACCTTCGTGCCAAGTGCCACTCCGACCAAACCCTAGACGTCACCAGCAAGGATCTCTATAGTTCTGATCACACTGTTGTCCCCGTTGATTTCTCTGATTCTGCTGCAGCTAGTGGTGAAGCGTTGGATACCAAAGGAATAATCATTGTGAAGCTACGTCGTGGTCAAGAGTTGCGGCTGAGAGCCATAGCTAGGAAGGGCATTGGTAAAGATCATGCAAAATGGTCGCCTGCAGCAACCGTGACATTCATGTATGAGCCAAACATTCACATCAATGAAGACCTAATGGAAACATTAACCCTAGAGGAAAAGAGAACTTGGGTTGAAAGTTGCCCAACCAGAGTATTTGAATTGGATCCTGTTACTCATCAGGTTGTTTCGACTCAGCAAATGAGATATTTAAAGAGAAGGTGTCTTGAGATGATTTTGAGGAGTCTAATAAGGAGCCTATGCTATTGGATAGGCTTTAAGCCTAAGTCTTCTCCAAATCTTCAAGCATCTTCTTCGAGAAGTGCTCTTATTTTCTTAAACTGGTTTTGTGTTGTTTATTCTACTCCAGTTATGGTACTCTTAAGGTGTTTAAGTGCTCTTATTTCATTTGTTTATGTTCTTGGTGGCTCCAATTCAGACATGTCTTCCTTCCTTGTGGTTATGGTGGTTGATCCTGAGGCATACACTTATGATGATGAGGTGATTAAGAAAGCAGAAGCTATGGGTAAAGCTGGACTAGTGGATATTACTGCAAAAGAAGATAGTTTTATCTTCACAGTTGAATCTACCGGTGCAATCAAAGCTTCCCAGTTGATACTCAATGCCATAGATATCCTGAAACAGAAGCTGGATGCAGTCCGTCTTTCAGACGATACTGTAGAAGCAGATGATCAGTTTGGTGAGTTAGGTGCACATATGCGAGGTGGATGA

Protein sequence

MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPNIHINEDLMETLTLEEKRTWVESCPTRVFELDPVTHQVVSTQQMRYLKRRCLEMILRSLIRSLCYWIGFKPKSSPNLQASSSRSALIFLNWFCVVYSTPVMVLLRCLSALISFVYVLGGSNSDMSSFLVVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLSDDTVEADDQFGELGAHMRGG

Homology

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BLAST of ClCG11G007460 vs. Swiss-Prot
Match: NRPB3_ARATH (DNA-directed RNA polymerases II, IV and V subunit 3 OS=Arabidopsis thaliana GN=NRPB3 PE=1 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 1.6e-102
Identity = 187/239 (78.24%), Postives = 211/239 (88.28%), Query Frame = 1


Query: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           M+G++YQRFPK+KIREL+DDYAKFELR+TD SMANALRRVMI+EVPT+AIDLVEIEVNSS
Sbjct: 1   MDGATYQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEF L +KC +DQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDSAAASGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           TS+DLYS+D TV PVDF+  ++ S ++ + KGIIIVKLRRGQEL+LRAIARKGIGKDHAK
Sbjct: 121 TSRDLYSADPTVTPVDFTIDSSVS-DSSEHKGIIIVKLRRGQELKLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPNIHINEDLMETLTLEEKRTWVESCPTRVFELDPVTHQVVSTQQMRY 240
           WSPAATVTFMYEP+I INED+M+TL+ EEK   +ES PT+VF +DPVT QVV      Y
Sbjct: 181 WSPAATVTFMYEPDIIINEDMMDTLSDEEKIDLIESSPTKVFGMDPVTRQVVVVDPEAY 238

HSP 2 Score: 162.5 bits (410), Expect = 9.6e-39
Identity = 79/90 (87.78%), Postives = 86/90 (95.56%), Query Frame = 1


Query: 323 VMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDIL 382
           V+VVDPEAYTYD+EVIKKAEAMGK GL++I+ K+DSFIFTVESTGA+KASQL+LNAID+L
Sbjct: 230 VVVVDPEAYTYDEEVIKKAEAMGKPGLIEISPKDDSFIFTVESTGAVKASQLVLNAIDLL 289

Query: 383 KQKLDAVRLSDDTVEADDQFGELGAHMRGG 413
           KQKLDAVRLSDDTVEADDQFGELGAHMRGG
Sbjct: 290 KQKLDAVRLSDDTVEADDQFGELGAHMRGG 319

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BLAST of ClCG11G007460 vs. Swiss-Prot
Match: RPD3B_ARATH (DNA-directed RNA polymerases IV and V subunit 3B OS=Arabidopsis thaliana GN=NRPD3B PE=1 SV=2)

HSP 1 Score: 342.4 bits (877), Expect = 6.7e-93
Identity = 173/239 (72.38%), Postives = 201/239 (84.10%), Query Frame = 1


Query: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           M+G +YQRFP VKIREL+DDYAKFELR+TD SMANALRRVMI+EVPT+AI LV+IEVNSS
Sbjct: 1   MDGVTYQRFPTVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIA RL LIPLTSERAMSMRF +DC+ C+GD  CEFCSVEF L AKC +DQTLDV
Sbjct: 61  VLNDEFIAQRLSLIPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKCVTDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDSAAASGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           TS+DLYS+D TV PVDF+ +++ S ++ + KGIII KLRRGQEL+L+A+ARKGIGKDHAK
Sbjct: 121 TSRDLYSADPTVTPVDFTSNSSTS-DSSEHKGIIIAKLRRGQELKLKALARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPNIHINEDLMETLTLEEKRTWVESCPTRVFELDPVTHQVVSTQQMRY 240
           WSPAATVT+MYEP+I INE++M TLT EEK   +ES PT+VF +DPVT QVV      Y
Sbjct: 181 WSPAATVTYMYEPDIIINEEMMNTLTDEEKIDLIESSPTKVFGIDPVTGQVVVVDPEAY 238

HSP 2 Score: 155.2 bits (391), Expect = 1.5e-36
Identity = 76/90 (84.44%), Postives = 83/90 (92.22%), Query Frame = 1


Query: 323 VMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDIL 382
           V+VVDPEAYTYD+EVIKKAEAMGK GL++I  K DSF+FTVESTGA+KASQL+LNAIDIL
Sbjct: 230 VVVVDPEAYTYDEEVIKKAEAMGKPGLIEIHPKHDSFVFTVESTGALKASQLVLNAIDIL 289

Query: 383 KQKLDAVRLSDDTVEADDQFGELGAHMRGG 413
           KQKLDA+RLSD+TVEADDQFGELGAHMR G
Sbjct: 290 KQKLDAIRLSDNTVEADDQFGELGAHMREG 319

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BLAST of ClCG11G007460 vs. Swiss-Prot
Match: RPB3_DICDI (DNA-directed RNA polymerase II subunit rpb3 OS=Dictyostelium discoideum GN=polr2c PE=3 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 8.6e-56
Identity = 118/234 (50.43%), Postives = 158/234 (67.52%), Query Frame = 1


Query: 4   SSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLN 63
           S   R P+++I E+++D   F L +TD S+ANALRRVMIAEVPT+ IDLVE E N+SVL 
Sbjct: 6   SQLTRQPELEILEIKNDSIIFILSNTDISVANALRRVMIAEVPTMCIDLVEFESNNSVLC 65

Query: 64  DEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSK 123
           DEFIAHRLGLIPL S+      ++RDC   D   +C+ CSVE  L  KC  ++  DVTS 
Sbjct: 66  DEFIAHRLGLIPLVSDNIDKFCYTRDCSCSD---RCDQCSVELRLNVKCTENRPRDVTSS 125

Query: 124 DLYSSDHTVVPVDFSDSAAASGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSP 183
           DL S +  V+PV    +++ S +      I IVKLRRGQE++LRAIA+KG+GK+HAKWSP
Sbjct: 126 DLLSQNSAVIPVSSQVTSSNSEQE-----IPIVKLRRGQEIKLRAIAKKGVGKEHAKWSP 185

Query: 184 AATVTFMYEPNIHINEDLMETLTLEEKRTWVESCPTRVFELDPVTHQVVSTQQM 238
           +   T+ ++P I +N++ ++ LT ++K  WV SCPT+V+   P  HQ  STQQ+
Sbjct: 186 SCVATYQFQPIIVLNQNRIDELTDQQKEEWVGSCPTKVYSYSP--HQ--STQQV 227

HSP 2 Score: 62.4 bits (150), Expect = 1.3e-08
Identity = 35/78 (44.87%), Postives = 45/78 (57.69%), Query Frame = 1


Query: 313 SNSDMSSFLVVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKAS 372
           S S   S   V + DP    Y  E  KKAE+ GK  LV +  K+D FIFTVES+GA+K  
Sbjct: 217 SYSPHQSTQQVTIEDPLRCVYCLECKKKAESFGKPDLVHLEQKQDKFIFTVESSGALKPE 276

Query: 373 QLILNAIDILKQKLDAVR 391
            ++L AI I+K+KL  ++
Sbjct: 277 DIVLYAIQIIKRKLTDIQ 294

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BLAST of ClCG11G007460 vs. Swiss-Prot
Match: RPB3_BOVIN (DNA-directed RNA polymerase II subunit RPB3 OS=Bos taurus GN=POLR2C PE=1 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 3.3e-47
Identity = 100/190 (52.63%), Postives = 131/190 (68.95%), Query Frame = 1


Query: 6   YQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
           Y   P V+I EL D+  KF + +TD ++AN++RRV IAEVP IAID V+I+ NSSVL+DE
Sbjct: 3   YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62

Query: 66  FIAHRLGLIPLTSERAMS-MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 125
           FIAHRLGLIPLTS+  +  +++SRDC     +  C  CSVEF L  +C+ DQT  VTS+D
Sbjct: 63  FIAHRLGLIPLTSDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 122

Query: 126 LYSSDHTVVPVDFSDSAAASGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 185
           L S+   V+PV   +      + ++   I+IVKLR+GQELRLRA A+KG GK+HAKW+P 
Sbjct: 123 LISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 182

Query: 186 ATVTFMYEPN 195
           A V F Y+P+
Sbjct: 183 AGVAFEYDPD 189

HSP 2 Score: 30.8 bits (68), Expect = 4.3e+01
Identity = 13/36 (36.11%), Postives = 21/36 (58.33%), Query Frame = 1


Query: 351 DITAKEDSFIFTVESTGAIKASQLILNAIDILKQKL 387
           D   K + F + VES G+++   ++L+A+  LK+KL
Sbjct: 221 DPNGKPERFYYNVESCGSLRPETIVLSALSGLKKKL 256

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BLAST of ClCG11G007460 vs. Swiss-Prot
Match: RPB3_HUMAN (DNA-directed RNA polymerase II subunit RPB3 OS=Homo sapiens GN=POLR2C PE=1 SV=2)

HSP 1 Score: 188.3 bits (477), Expect = 1.6e-46
Identity = 99/190 (52.11%), Postives = 130/190 (68.42%), Query Frame = 1


Query: 6   YQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
           Y   P V+I EL D+  KF + +TD ++AN++RRV IAEVP IAID V+I+ NSSVL+DE
Sbjct: 3   YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62

Query: 66  FIAHRLGLIPLTSERAMS-MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 125
           FIAHRLGLIPL S+  +  +++SRDC     +  C  CSVEF L  +C+ DQT  VTS+D
Sbjct: 63  FIAHRLGLIPLISDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 122

Query: 126 LYSSDHTVVPVDFSDSAAASGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 185
           L S+   V+PV   +      + ++   I+IVKLR+GQELRLRA A+KG GK+HAKW+P 
Sbjct: 123 LISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 182

Query: 186 ATVTFMYEPN 195
           A V F Y+P+
Sbjct: 183 AGVAFEYDPD 189

HSP 2 Score: 30.8 bits (68), Expect = 4.3e+01
Identity = 13/36 (36.11%), Postives = 21/36 (58.33%), Query Frame = 1


Query: 351 DITAKEDSFIFTVESTGAIKASQLILNAIDILKQKL 387
           D   K + F + VES G+++   ++L+A+  LK+KL
Sbjct: 221 DPNGKPERFYYNVESCGSLRPETIVLSALSGLKKKL 256

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BLAST of ClCG11G007460 vs. TrEMBL
Match: A0A151SVV8_CAJCA (DNA-directed RNA polymerase II subunit RPB3-A OS=Cajanus cajan GN=KK1_014357 PE=4 SV=1)

HSP 1 Score: 535.4 bits (1378), Expect = 6.0e-149
Identity = 294/414 (71.01%), Postives = 322/414 (77.78%), Query Frame = 1


Query: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           MEG SY R P+VKIREL+DDYAKFELRDTDAS+ANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGVSYARMPRVKIRELKDDYAKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLR KC +DQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDSAAASGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           +SKDLYSSDH+VVPVDFSD   ++ E+ D +GIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 SSKDLYSSDHSVVPVDFSD--PSNHESSDNRGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPNIHINEDLMETLTLEEKRTWVESCPTRVFELDPVTHQVVSTQQMRYL 240
           WSPAATVTFMYEP IHINEDLMETLTLEEKR WV+S PTRVFE+DPVT Q  S     + 
Sbjct: 181 WSPAATVTFMYEPEIHINEDLMETLTLEEKREWVDSSPTRVFEIDPVTQQ-CSLLNYGFG 240

Query: 241 KRRCLEMILRSLIRSLCYWIGFKPKSSPNLQASSSR--SALIFLNWFCVVYSTPVMVLLR 300
                  I  +++ S+         +S  L  SSSR  S      W              
Sbjct: 241 YALFSAFIGNAIVNSV--------HNSKLLSLSSSRIISRTNSKEW-------------- 300

Query: 301 CLSALISFVYVLGGSNSDMSSFLVVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDS 360
           CL+ ++                    VVD EAYTYDDEV+KKAEAMGK GLV+I A++DS
Sbjct: 301 CLTFIVM-------------------VVDAEAYTYDDEVLKKAEAMGKPGLVEIIARQDS 360

Query: 361 FIFTVESTGAIKASQLILNAIDILKQKLDAVRLSDDTVEADDQFGELGAHMRGG 413
           FIFTVESTGAIKASQL+LNAI+ILKQKLDAVRLS+DTVEADDQFGELGAHMRGG
Sbjct: 361 FIFTVESTGAIKASQLVLNAIEILKQKLDAVRLSEDTVEADDQFGELGAHMRGG 370

[Close]

BLAST of ClCG11G007460 vs. TrEMBL
Match: A0A0A0LHS1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G093850 PE=4 SV=1)

HSP 1 Score: 458.4 bits (1178), Expect = 9.4e-126
Identity = 229/239 (95.82%), Postives = 232/239 (97.07%), Query Frame = 1


Query: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDSAAASGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           TSKDLYSSDHTVVPVDFSDSAAA+GEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPNIHINEDLMETLTLEEKRTWVESCPTRVFELDPVTHQVVSTQQMRY 240
           WSPAATVTFMYEP+IHINEDLMETLTLEEKRTWVESCPTRVFELD VTHQV+      Y
Sbjct: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDTVTHQVMVVDPEAY 239

[Close]

BLAST of ClCG11G007460 vs. TrEMBL
Match: A0A0A0LHS1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G093850 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 2.7e-40
Identity = 89/90 (98.89%), Postives = 90/90 (100.00%), Query Frame = 1


Query: 323 VMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDIL 382
           VMVVDPEAYTYDDEVIKKAEAMGKAGLVDITA+EDSFIFTVESTGAIKASQLILNAIDIL
Sbjct: 231 VMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDIL 290

Query: 383 KQKLDAVRLSDDTVEADDQFGELGAHMRGG 413
           KQKLDAVRLSDDTVEADDQFGELGAHMRGG
Sbjct: 291 KQKLDAVRLSDDTVEADDQFGELGAHMRGG 320

HSP 2 Score: 412.1 bits (1058), Expect = 7.7e-112
Identity = 208/239 (87.03%), Postives = 221/239 (92.47%), Query Frame = 1


Query: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           MEG SYQRFPKVKIREL+DDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGVSYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC +DQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDSAAASGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           TSKDLYSSDHTVVPVDF+DSA    ++ + +GIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 TSKDLYSSDHTVVPVDFTDSAGY--DSSEQRGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPNIHINEDLMETLTLEEKRTWVESCPTRVFELDPVTHQVVSTQQMRY 240
           WSPAATVTFMYEP IHINED+METLTLEEK+++VES PTRVF++DP T QVV      Y
Sbjct: 181 WSPAATVTFMYEPEIHINEDMMETLTLEEKQSFVESSPTRVFDIDPNTQQVVVVDPEAY 237

[Close]

BLAST of ClCG11G007460 vs. TrEMBL
Match: A0A061E7U0_THECC (DNA-directed RNA polymerase family protein OS=Theobroma cacao GN=TCM_007121 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 6.2e-37
Identity = 81/90 (90.00%), Postives = 88/90 (97.78%), Query Frame = 1


Query: 323 VMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDIL 382
           V+VVDPEAYTYDDEV+KKAEAMGK GLV+I AKEDSFIFTVESTGAIKASQL+LNAI++L
Sbjct: 229 VVVVDPEAYTYDDEVLKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVL 288

Query: 383 KQKLDAVRLSDDTVEADDQFGELGAHMRGG 413
           KQKLDAVRLS+DTVEADDQFGELGAHMRGG
Sbjct: 289 KQKLDAVRLSEDTVEADDQFGELGAHMRGG 318

HSP 2 Score: 408.7 bits (1049), Expect = 8.5e-111
Identity = 205/239 (85.77%), Postives = 221/239 (92.47%), Query Frame = 1


Query: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           MEG+SYQRFP+VKIREL+DDYAKFEL DTDASMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGASYQRFPRVKIRELKDDYAKFELHDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTS+RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC SDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSQRAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCISDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDSAAASGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           TSKDLYSSDHTVVPVDF+DSA    E+ + +GIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 TSKDLYSSDHTVVPVDFTDSAGY--ESSEQRGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPNIHINEDLMETLTLEEKRTWVESCPTRVFELDPVTHQVVSTQQMRY 240
           WSPAATVTFMYEP IHINED+M+TLTLEEK+++V+S PTRVF++DP T QVV      Y
Sbjct: 181 WSPAATVTFMYEPEIHINEDMMDTLTLEEKQSFVDSSPTRVFDIDPNTQQVVVVDPEAY 237

[Close]

BLAST of ClCG11G007460 vs. TrEMBL
Match: A0A0D2V5K4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G149200 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 4.0e-36
Identity = 79/90 (87.78%), Postives = 87/90 (96.67%), Query Frame = 1


Query: 323 VMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDIL 382
           V+VVDPEAYTYDDEV+KKAEAMGK GLV+I AKEDSFIFT+ESTGA+KA QL+LNAI+IL
Sbjct: 229 VVVVDPEAYTYDDEVLKKAEAMGKPGLVEIYAKEDSFIFTIESTGAVKAFQLVLNAIEIL 288

Query: 383 KQKLDAVRLSDDTVEADDQFGELGAHMRGG 413
           KQKLDAVRLS+DTVEADDQFGELGAHMRGG
Sbjct: 289 KQKLDAVRLSEDTVEADDQFGELGAHMRGG 318

HSP 2 Score: 408.3 bits (1048), Expect = 1.1e-110
Identity = 204/231 (88.31%), Postives = 216/231 (93.51%), Query Frame = 1


Query: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           M+G+SYQRFPKVKIREL+DDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MDGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDSAAASGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           TSKDLYSSDH+VVPVDF D A         +GIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 TSKDLYSSDHSVVPVDFVDPAGYDSTD-QQRGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPNIHINEDLMETLTLEEKRTWVESCPTRVFELDPVTHQV 232
           WSPAATVTFMYEP IHINEDLME+L+LEEK++WVES PT+VF++DP T QV
Sbjct: 181 WSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQV 230

[Close]

BLAST of ClCG11G007460 vs. TAIR10
Match: AT2G15430.1 (AT2G15430.1 DNA-directed RNA polymerase family protein)

HSP 1 Score: 374.4 bits (960), Expect = 9.0e-104
Identity = 187/239 (78.24%), Postives = 211/239 (88.28%), Query Frame = 1


Query: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           M+G++YQRFPK+KIREL+DDYAKFELR+TD SMANALRRVMI+EVPT+AIDLVEIEVNSS
Sbjct: 1   MDGATYQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEF L +KC +DQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDSAAASGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           TS+DLYS+D TV PVDF+  ++ S ++ + KGIIIVKLRRGQEL+LRAIARKGIGKDHAK
Sbjct: 121 TSRDLYSADPTVTPVDFTIDSSVS-DSSEHKGIIIVKLRRGQELKLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPNIHINEDLMETLTLEEKRTWVESCPTRVFELDPVTHQVVSTQQMRY 240
           WSPAATVTFMYEP+I INED+M+TL+ EEK   +ES PT+VF +DPVT QVV      Y
Sbjct: 181 WSPAATVTFMYEPDIIINEDMMDTLSDEEKIDLIESSPTKVFGMDPVTRQVVVVDPEAY 238

HSP 2 Score: 162.5 bits (410), Expect = 5.4e-40
Identity = 79/90 (87.78%), Postives = 86/90 (95.56%), Query Frame = 1


Query: 323 VMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDIL 382
           V+VVDPEAYTYD+EVIKKAEAMGK GL++I+ K+DSFIFTVESTGA+KASQL+LNAID+L
Sbjct: 230 VVVVDPEAYTYDEEVIKKAEAMGKPGLIEISPKDDSFIFTVESTGAVKASQLVLNAIDLL 289

Query: 383 KQKLDAVRLSDDTVEADDQFGELGAHMRGG 413
           KQKLDAVRLSDDTVEADDQFGELGAHMRGG
Sbjct: 290 KQKLDAVRLSDDTVEADDQFGELGAHMRGG 319

[Close]

BLAST of ClCG11G007460 vs. TAIR10
Match: AT2G15400.1 (AT2G15400.1 DNA-directed RNA polymerase family protein)

HSP 1 Score: 342.4 bits (877), Expect = 3.8e-94
Identity = 173/239 (72.38%), Postives = 201/239 (84.10%), Query Frame = 1


Query: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           M+G +YQRFP VKIREL+DDYAKFELR+TD SMANALRRVMI+EVPT+AI LV+IEVNSS
Sbjct: 1   MDGVTYQRFPTVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIA RL LIPLTSERAMSMRF +DC+ C+GD  CEFCSVEF L AKC +DQTLDV
Sbjct: 61  VLNDEFIAQRLSLIPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKCVTDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDSAAASGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           TS+DLYS+D TV PVDF+ +++ S ++ + KGIII KLRRGQEL+L+A+ARKGIGKDHAK
Sbjct: 121 TSRDLYSADPTVTPVDFTSNSSTS-DSSEHKGIIIAKLRRGQELKLKALARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPNIHINEDLMETLTLEEKRTWVESCPTRVFELDPVTHQVVSTQQMRY 240
           WSPAATVT+MYEP+I INE++M TLT EEK   +ES PT+VF +DPVT QVV      Y
Sbjct: 181 WSPAATVTYMYEPDIIINEEMMNTLTDEEKIDLIESSPTKVFGIDPVTGQVVVVDPEAY 238

HSP 2 Score: 155.2 bits (391), Expect = 8.6e-38
Identity = 76/90 (84.44%), Postives = 83/90 (92.22%), Query Frame = 1


Query: 323 VMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDIL 382
           V+VVDPEAYTYD+EVIKKAEAMGK GL++I  K DSF+FTVESTGA+KASQL+LNAIDIL
Sbjct: 230 VVVVDPEAYTYDEEVIKKAEAMGKPGLIEIHPKHDSFVFTVESTGALKASQLVLNAIDIL 289

Query: 383 KQKLDAVRLSDDTVEADDQFGELGAHMRGG 413
           KQKLDA+RLSD+TVEADDQFGELGAHMR G
Sbjct: 290 KQKLDAIRLSDNTVEADDQFGELGAHMREG 319

[Close]

BLAST of ClCG11G007460 vs. TAIR10
Match: AT1G60850.2 (AT1G60850.2 DNA-directed RNA polymerase family protein)

HSP 1 Score: 109.4 bits (272), Expect = 5.4e-24
Identity = 81/245 (33.06%), Postives = 121/245 (49.39%), Query Frame = 1


Query: 3   GSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVL 62
           G+ Y  F KV +  L     +F++   DA+ ANA RR++IAEVP++AI+ V I  N+SV+
Sbjct: 68  GNFYDNF-KVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSVI 127

Query: 63  NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQ-TLDVT 122
            DE +AHR+GLIP+ ++  +    S      + D   E  ++ F L  KC  ++  L V 
Sbjct: 128 IDEVLAHRMGLIPIAADPRLFEYLS------EHDQANEKNTIVFKLHVKCPKNRPRLKVL 187

Query: 123 SKDL-----------YSSDHTVVPVDFSDSAAASGEALD----------TKGIIIVKLRR 182
           + DL            S + T  P  ++ S + S ++L              I+I KL  
Sbjct: 188 TSDLKWLPNGSELLRESENKTSKPKTYT-SFSCSQDSLPEFANNPITPCDLDILIAKLAP 247

Query: 183 GQELRLRAIARKGIGKDHAKWSPAATVTFMYEPNIHINEDLMETLTLEEKRTWVESCPTR 226
           GQE+ L A A KGIGK HAKWSP  T  +   P + +  ++ + L        V  CP  
Sbjct: 248 GQEIELEAHAVKGIGKTHAKWSPVGTAWYRMHPEVVLRGEVEDELA----ERLVNVCPQN 300

HSP 2 Score: 34.7 bits (78), Expect = 1.7e-01
Identity = 15/40 (37.50%), Postives = 24/40 (60.00%), Query Frame = 1


Query: 350 VDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAV 390
           VD+ + ++ FIF +ESTG++    L   A+ IL+ K +A+
Sbjct: 333 VDLGSVKNHFIFNIESTGSLPPEVLFTEAVKILEAKCEAI 372

[Close]

BLAST of ClCG11G007460 vs. TAIR10
Match: AT1G60620.1 (AT1G60620.1 RNA polymerase I subunit 43)

HSP 1 Score: 104.8 bits (260), Expect = 1.3e-22
Identity = 76/236 (32.20%), Postives = 114/236 (48.31%), Query Frame = 1


Query: 11  KVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
           KV +  L +    F++    A +ANA RR+++AE+P++AI+ V +  N+SV+ DE +AHR
Sbjct: 82  KVDVISLTETDMVFDMIGVHAGIANAFRRILLAELPSMAIEKVYVANNTSVIQDEVLAHR 141

Query: 71  LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC-HSDQTLDVTSKDL---- 130
           LGLIP+ ++  +    S      + D   E  ++ F L  KC   D    V + +L    
Sbjct: 142 LGLIPIAADPRLFEYLS------ENDQPNEKNTIVFKLHVKCLKGDPRRKVLTSELKWLP 201

Query: 131 -------YSSDHTVVP---VDFSDSAAASGEALDT------KGIIIVKLRRGQELRLRAI 190
                   S   T  P     F+ S  +  E  +       K I+I KL  GQE+ L A 
Sbjct: 202 NGSELIKESGGSTTTPKTYTSFNHSQDSFPEFAENPIRPTLKDILIAKLGPGQEIELEAH 261

Query: 191 ARKGIGKDHAKWSPAATVTFMYEPNIHINEDLMETLTLEEKRTWVESCPTRVFELD 226
           A KGIGK HAKWSP AT  +   P +     L++    +     V+ CP +VF+++
Sbjct: 262 AVKGIGKTHAKWSPVATAWYRMLPEV----VLLKEFEGKHAEELVKVCPKKVFDIE 307

HSP 2 Score: 32.3 bits (72), Expect = 8.4e-01
Identity = 16/40 (40.00%), Postives = 22/40 (55.00%), Query Frame = 1


Query: 350 VDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAV 390
           VD+   ++ FIFT+ESTG+     L   A+ IL+ K + V
Sbjct: 341 VDLRRVKNHFIFTIESTGSQPPEVLFNEAVKILEDKCERV 380

[Close]

BLAST of ClCG11G007460 vs. NCBI nr
Match: gi|1012347744|gb|KYP58935.1| (DNA-directed RNA polymerase II subunit RPB3-A [Cajanus cajan])

HSP 1 Score: 535.4 bits (1378), Expect = 8.7e-149
Identity = 294/414 (71.01%), Postives = 322/414 (77.78%), Query Frame = 1


Query: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           MEG SY R P+VKIREL+DDYAKFELRDTDAS+ANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGVSYARMPRVKIRELKDDYAKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLR KC +DQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDSAAASGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           +SKDLYSSDH+VVPVDFSD   ++ E+ D +GIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 SSKDLYSSDHSVVPVDFSD--PSNHESSDNRGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPNIHINEDLMETLTLEEKRTWVESCPTRVFELDPVTHQVVSTQQMRYL 240
           WSPAATVTFMYEP IHINEDLMETLTLEEKR WV+S PTRVFE+DPVT Q  S     + 
Sbjct: 181 WSPAATVTFMYEPEIHINEDLMETLTLEEKREWVDSSPTRVFEIDPVTQQ-CSLLNYGFG 240

Query: 241 KRRCLEMILRSLIRSLCYWIGFKPKSSPNLQASSSR--SALIFLNWFCVVYSTPVMVLLR 300
                  I  +++ S+         +S  L  SSSR  S      W              
Sbjct: 241 YALFSAFIGNAIVNSV--------HNSKLLSLSSSRIISRTNSKEW-------------- 300

Query: 301 CLSALISFVYVLGGSNSDMSSFLVVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDS 360
           CL+ ++                    VVD EAYTYDDEV+KKAEAMGK GLV+I A++DS
Sbjct: 301 CLTFIVM-------------------VVDAEAYTYDDEVLKKAEAMGKPGLVEIIARQDS 360

Query: 361 FIFTVESTGAIKASQLILNAIDILKQKLDAVRLSDDTVEADDQFGELGAHMRGG 413
           FIFTVESTGAIKASQL+LNAI+ILKQKLDAVRLS+DTVEADDQFGELGAHMRGG
Sbjct: 361 FIFTVESTGAIKASQLVLNAIEILKQKLDAVRLSEDTVEADDQFGELGAHMRGG 370

[Close]

BLAST of ClCG11G007460 vs. NCBI nr
Match: gi|659082285|ref|XP_008441761.1| (PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerases II, IV and V subunit 3-like [Cucumis melo])

HSP 1 Score: 459.9 bits (1182), Expect = 4.6e-126
Identity = 229/239 (95.82%), Postives = 233/239 (97.49%), Query Frame = 1


Query: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDSAAASGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           TSKDLYSSDHTVVPVDFSDSAAA+GEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPNIHINEDLMETLTLEEKRTWVESCPTRVFELDPVTHQVVSTQQMRY 240
           WSPAATVTFMYEP+IHINEDLMETLTLEEK TWVESCPTRVFELDPVTHQV+  +   Y
Sbjct: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKXTWVESCPTRVFELDPVTHQVMVVEPEAY 239

[Close]

BLAST of ClCG11G007460 vs. NCBI nr
Match: gi|659082285|ref|XP_008441761.1| (PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerases II, IV and V subunit 3-like [Cucumis melo])

HSP 1 Score: 172.9 bits (437), Expect = 1.1e-39
Identity = 88/90 (97.78%), Postives = 90/90 (100.00%), Query Frame = 1


Query: 323 VMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDIL 382
           VMVV+PEAYTYDDEVIKKAEAMGKAGLVDITA+EDSFIFTVESTGAIKASQLILNAIDIL
Sbjct: 231 VMVVEPEAYTYDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDIL 290

Query: 383 KQKLDAVRLSDDTVEADDQFGELGAHMRGG 413
           KQKLDAVRLSDDTVEADDQFGELGAHMRGG
Sbjct: 291 KQKLDAVRLSDDTVEADDQFGELGAHMRGG 320

HSP 2 Score: 458.4 bits (1178), Expect = 1.3e-125
Identity = 229/239 (95.82%), Postives = 232/239 (97.07%), Query Frame = 1


Query: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDSAAASGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           TSKDLYSSDHTVVPVDFSDSAAA+GEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPNIHINEDLMETLTLEEKRTWVESCPTRVFELDPVTHQVVSTQQMRY 240
           WSPAATVTFMYEP+IHINEDLMETLTLEEKRTWVESCPTRVFELD VTHQV+      Y
Sbjct: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDTVTHQVMVVDPEAY 239

[Close]

BLAST of ClCG11G007460 vs. NCBI nr
Match: gi|449442251|ref|XP_004138895.1| (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3 [Cucumis sativus])

HSP 1 Score: 174.5 bits (441), Expect = 3.9e-40
Identity = 89/90 (98.89%), Postives = 90/90 (100.00%), Query Frame = 1


Query: 323 VMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDIL 382
           VMVVDPEAYTYDDEVIKKAEAMGKAGLVDITA+EDSFIFTVESTGAIKASQLILNAIDIL
Sbjct: 231 VMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDIL 290

Query: 383 KQKLDAVRLSDDTVEADDQFGELGAHMRGG 413
           KQKLDAVRLSDDTVEADDQFGELGAHMRGG
Sbjct: 291 KQKLDAVRLSDDTVEADDQFGELGAHMRGG 320

HSP 2 Score: 414.5 bits (1064), Expect = 2.2e-112
Identity = 205/239 (85.77%), Postives = 220/239 (92.05%), Query Frame = 1


Query: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           MEG SYQRFPKVKIRE++DDY KFELR+TDASMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGKSYQRFPKVKIREMKDDYLKFELRETDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGL+PLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV
Sbjct: 61  VLNDEFIAHRLGLVPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDSAAASGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           TSKDLYSSDHTVVPVDFSDSA    ++ + +GIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 TSKDLYSSDHTVVPVDFSDSAGY--DSSENRGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPNIHINEDLMETLTLEEKRTWVESCPTRVFELDPVTHQVVSTQQMRY 240
           WSPAATVTFMYEP+I INE+LM+TLT EEKR WV+S PT+VF++DP THQVV      Y
Sbjct: 181 WSPAATVTFMYEPDIRINEELMDTLTFEEKRNWVDSSPTKVFDIDPNTHQVVVVDPEAY 237

[Close]

BLAST of ClCG11G007460 vs. NCBI nr
Match: gi|1009149980|ref|XP_015892771.1| (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3 [Ziziphus jujuba])

HSP 1 Score: 166.4 bits (420), Expect = 1.1e-37
Identity = 83/90 (92.22%), Postives = 89/90 (98.89%), Query Frame = 1


Query: 323 VMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDIL 382
           V+VVDPEAYTYD+EVIKKA+AMGK GLVDITAKEDSFIFTVESTGAIKASQL+LNAI++L
Sbjct: 229 VVVVDPEAYTYDEEVIKKADAMGKHGLVDITAKEDSFIFTVESTGAIKASQLLLNAIEVL 288

Query: 383 KQKLDAVRLSDDTVEADDQFGELGAHMRGG 413
           KQKLDAVRLSDDTVEADDQFGELGAHMRGG
Sbjct: 289 KQKLDAVRLSDDTVEADDQFGELGAHMRGG 318

HSP 2 Score: 412.1 bits (1058), Expect = 1.1e-111
Identity = 208/239 (87.03%), Postives = 221/239 (92.47%), Query Frame = 1


Query: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           MEG SYQRFPKVKIREL+DDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGVSYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC +DQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDSAAASGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           TSKDLYSSDHTVVPVDF+DSA    ++ + +GIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 TSKDLYSSDHTVVPVDFTDSAGY--DSSEQRGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPNIHINEDLMETLTLEEKRTWVESCPTRVFELDPVTHQVVSTQQMRY 240
           WSPAATVTFMYEP IHINED+METLTLEEK+++VES PTRVF++DP T QVV      Y
Sbjct: 181 WSPAATVTFMYEPEIHINEDMMETLTLEEKQSFVESSPTRVFDIDPNTQQVVVVDPEAY 237

The following BLAST results are available for this feature:

BLAST of ClCG11G007460 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NRPB3_ARATH	1.6e-102	78.24	DNA-directed RNA polymerases II, IV and V subunit 3 OS=Arabidopsis thaliana GN=N...	[more]
RPD3B_ARATH	6.7e-93	72.38	DNA-directed RNA polymerases IV and V subunit 3B OS=Arabidopsis thaliana GN=NRPD...	[more]
RPB3_DICDI	8.6e-56	50.43	DNA-directed RNA polymerase II subunit rpb3 OS=Dictyostelium discoideum GN=polr2...	[more]
RPB3_BOVIN	3.3e-47	52.63	DNA-directed RNA polymerase II subunit RPB3 OS=Bos taurus GN=POLR2C PE=1 SV=1	[more]
RPB3_HUMAN	1.6e-46	52.11	DNA-directed RNA polymerase II subunit RPB3 OS=Homo sapiens GN=POLR2C PE=1 SV=2	[more]

BLAST of ClCG11G007460 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A151SVV8_CAJCA	6.0e-149	71.01	DNA-directed RNA polymerase II subunit RPB3-A OS=Cajanus cajan GN=KK1_014357 PE=...	[more]
A0A0A0LHS1_CUCSA	9.4e-126	95.82	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G093850 PE=4 SV=1	[more]
A0A0A0LHS1_CUCSA	2.7e-40	98.89	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G093850 PE=4 SV=1	[more]
A0A061E7U0_THECC	6.2e-37	90.00	DNA-directed RNA polymerase family protein OS=Theobroma cacao GN=TCM_007121 PE=4...	[more]
A0A0D2V5K4_GOSRA	4.0e-36	87.78	Uncharacterized protein OS=Gossypium raimondii GN=B456_012G149200 PE=4 SV=1	[more]

BLAST of ClCG11G007460 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G15430.1	9.0e-104	78.24	DNA-directed RNA polymerase family protein	[more]
AT2G15400.1	3.8e-94	72.38	DNA-directed RNA polymerase family protein	[more]
AT1G60850.2	5.4e-24	33.06	DNA-directed RNA polymerase family protein	[more]
AT1G60620.1	1.3e-22	32.20	RNA polymerase I subunit 43	[more]

BLAST of ClCG11G007460 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|1012347744\|gb\|KYP58935.1\|	8.7e-149	71.01	DNA-directed RNA polymerase II subunit RPB3-A [Cajanus cajan]	[more]
gi\|659082285\|ref\|XP_008441761.1\|	4.6e-126	95.82	PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerases II, IV and V subuni...	[more]
gi\|659082285\|ref\|XP_008441761.1\|	1.1e-39	97.78	PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerases II, IV and V subuni...	[more]
gi\|449442251\|ref\|XP_004138895.1\|	3.9e-40	98.89	PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3 [Cucumis sativus]	[more]
gi\|1009149980\|ref\|XP_015892771.1\|	1.1e-37	92.22	PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001514	DNA-dir_RNA_pol_30-40kDasu_CS
IPR009025	RBP11-like_dimer
IPR011262	DNA-dir_RNA_pol_insert
IPR011263	DNA-dir_RNA_pol_RpoA/D/Rpb3

Vocabulary: **Biological Process**
Term	Definition
GO:0006351	transcription, DNA-templated

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0003899	DNA-directed RNA polymerase activity
GO:0046983	protein dimerization activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed RNA polymerase activity
molecular_function	GO:0046983	protein dimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG11G007460.1	ClCG11G007460.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001514	DNA-directed RNA polymerase, 30-40kDa subunit, conserved site	PROSITE	PS00446	RNA_POL_D_30KD	coord: 35..75 scor
IPR009025	DNA-directed RNA polymerase, RBP11-like dimerisation domain	PFAM	PF01193	RNA_pol_L	coord: 23..386 score: 7.9
IPR009025	DNA-directed RNA polymerase, RBP11-like dimerisation domain	unknown	SSF55257	RBP11-like subunits of RNA polymerase	coord: 214..243 score: 9.42E-19coord: 10..51 score: 9.42E-19coord: 323..394 score: 1.99
IPR011262	DNA-directed RNA polymerase, insert domain	GENE3D	G3DSA:2.170.120.12		coord: 47..179 score: 5.0
IPR011262	DNA-directed RNA polymerase, insert domain	PFAM	PF01000	RNA_pol_A_bac	coord: 53..182 score: 5.4
IPR011262	DNA-directed RNA polymerase, insert domain	unknown	SSF56553	Insert subdomain of RNA polymerase alpha subunit	coord: 46..183 score: 4.71
IPR011263	DNA-directed RNA polymerase, RpoA/D/Rpb3-type	SMART	SM00662	rpoldneu2	coord: 21..392 score: 8.8
None	No IPR available	GENE3D	G3DSA:3.30.1360.10		coord: 6..46 score: 2.7E-42coord: 338..390 score: 2.7E-42coord: 180..222 score: 2.7
None	No IPR available	PANTHER	PTHR11800	DNA-DIRECTED RNA POLYMERASE	coord: 6..227 score: 9.6E-143coord: 318..410 score: 9.6E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG11G007460	Csa2G093850	Cucumber (Chinese Long) v2	cuwcgB107
ClCG11G007460	MELO3C008589	Melon (DHL92) v3.5.1	mewcgB371
ClCG11G007460	Cla002053	Watermelon (97103) v1	wcgwmB108
ClCG11G007460	Cla97C11G215950	Watermelon (97103) v2	wcgwmbB067
ClCG11G007460	Bhi06G000824	Wax gourd	wcgwgoB149
ClCG11G007460	CSPI02G07970	Wild cucumber (PI 183967)	cpiwcgB114
ClCG11G007460	Lsi11G009430	Bottle gourd (USVL1VR-Ls)	lsiwcgB086
ClCG11G007460	CsGy2G008250	Cucumber (Gy14) v2	cgybwcgB106
ClCG11G007460	MELO3C008589.2	Melon (DHL92) v3.6.1	medwcgB366
ClCG11G007460	CsaV3_2G010370	Cucumber (Chinese Long) v3	cucwcgB123

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG11G007460	Cucurbita moschata (Rifu)	cmowcgB697
ClCG11G007460	Cucurbita pepo (Zucchini)	cpewcgB096
ClCG11G007460	Bottle gourd (USVL1VR-Ls)	lsiwcgB082