CsaV3_2G010370 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_2G010370
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	DNA-directed RNA polymerase II subunit, putative
Location	chr2 : 7378778 .. 7386866 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TATCGAACAATTTTTGTTTTTAATAAACAAAAATTAAATGGGACCTAAAAATGGAGCCTTCTTGCAATAGTTAAACTCTGTTCGTTCATAAACCCTCGAGAGAGTGAGAGTGAGATAGAAGGAGAGAGGAGGAAGTCATGGAAGGGAGTTCGTACCAGCGATTTCCAAAGGTGAAAATCCGAGAACTCCGAGATGACTACGCCAAATTCGAGCTCCGGGACACCGATGCCAGCATGGCCAACGCTCTCCGTCGCGTCATGATTGCCGAGGTTCCCACCATTGCCATTGATTTGGTAGAAATTGAAGTGAACTCCTCTGTTCTCAACGACGAGTTCATCGCCCATCGCCTCGGTCTCATTCCCCTCACCAGCGAGCGTGCCATGTCCATGCGCTTCTCTCGGGACTGTGATGCTTGCGATGGTGATGGCCAGTGTGAGTTTTGCTCTGTCGAGTTTCACCTTCGCGCCAAGTGCCACTCCGACCAAACCCTAGACGTCACCAGTAAGGATCTCTATAGTTCTGATCACACTGTTGTCCCCGTTGATTTCTCCGATTCTGCTGCAGCTACTGGTGAAGCGCTGGATACCAAGTATGTCATCTTCTTACTTTCTTCTCTTTCAGACCTGTTTATTCTTGCCATTTCATCAGATTGTTGCATTAGATTGGTATGTGATGTTTAATATGCAACTCCATTTGCTGTCTGGGTTACAAATGGAGGTTAAGACTTAGGAGTCTACACATCTTAGAGATAGTCCATTTCTACAACTCAGAAGCTCGGCCTCCAAAGTTCTAATTTCTTCTTTCTATGCAACATTGCAGAATGTTTGTTTTGAGAAAAATATCATTTTAATTTGGTGTCATTGTGGTTCATTAAGTAATTGCTCCCCAATTTTGAGCTGCTTTTGTGATGATTGTAGAGGAATAATCATTGTGAAGCTACGTCGCGGTCAAGAGTTGAGGCTGAGAGCCATAGCTAGGAAGGGTATTGGAAAAGATCATGCAAAATGGTCGCCTGCAGCAACTGTGACATTCATGTATGAACCGAGCATTCACATCAATGAAGACCTAATGGAAACATTAACTCTAGAGGAAAAGAGAACTTGGGTTGAAAGTTGTCCGACTAGAGTATTTGAATTGGATACTGTCACTCATCAGGTTCTTCTCATACAACCTTATTTTCTTTTCTTCTTATTTGTTGCTTTAGTACTATTATGTTATTGTCCAGAGGGTTGTGTTGAAGAGGTGATGTGGATGGTATTTGTCCTCTATTATTGCTGCCTGTTGTTTATAGTTTGTCATGCAGAGACTCATGCTTGTAACTTTTAGAATAAATATAGTACTCTGCTTGTTCTCTCATAAATAGGAGAGCTACCAGGTCACGTTTACCTAAGAAGAAAAAAAGTGCTTGTCTTGGCAATTTCCTTCCACAGGCAGAAGAACCTCTTCAAAGTTTTGAAATTGATGGAGCCTTTTAAGTAATCAACATTGTAGTTGCTTTTGACAACCAATCTCCAGAAAGCATCCTTTTCATGTTCAATTCTCCACAACCACTTAATAAGAGACATTCTTTTTTGGAGCTCAAAAAAGATATCGAAGATGGGCCTAAAAGTGTTTTCTTTTTAATATCTGTGTGTGTCTGGGCCAGCTCACGGGACAACCTGCCTGACCCTACAACATTTGGGTATCAAGGAAATTCATAGGAAATTAATTCTTAGGTAAGTGGCCACCATGGATCGAACCCATGATCTCTTAGTTAGATATTGAGAGTGAGACTATATCTCCCTTTTTACCACTAGGTCAACCCATGATGGTTGATGGGCCTAAAAGTGTTAAGTGTCTTCTATGGGAGATTGTATATTCTTGCTTTAATACTATTGATAGGCTCCAAAAATATGTTCTTGACTCCAAATCTCACCATCATGGTGGTGGTGCCTCTGCAAAAAGAGTGAAAAAAACTCAGAATCATGTCTTCTTCGAGTGTCCCTTTGTTGCAAAAATCTGGGCTATTGTCTTCTTTTCTTTTGCTACCTTGTTGGACACCATATCATGGGTCAGATCGTTGTTCATTGATCACCCATTCAAGGAAACAAAAAGGAAATTGTGGGATAGCATAACTTGAGCTGCTATGTGGAAAGTTTGGGATGAGAGGAACTCAAGGATTTTTATAGGACAGGGAAGGTCTGCAGAAGTTGTTCTTGAATTATAATTATTTAATGTTTTTTTCTGGTGTTAAAATATTCAACTTCGGCACTTTCACCTTGAATTTCGTTGTATCTAATTGGAAAAACATTTTGTAAACCCTATATGGGCCTCTTTTATATCACTTTGGATATTCCATTCATCAAGGAAATTGTTTCTTGTCCAAAAAAGGGAGAAATTCTCATAATGAAGATTTTCCACTTCCACCTCCCAAGGAATGATGAGTCATGATCTCATTCCCATTAGACTAAGTTTCATTTTCCAACTCCTTGCAACTAGCTTCAAGGTCTGTTGATAATTGTCATTCTGAAGGTTTTTCTCTTCAACCAATAAGACGTTCAAAGAGACATATTTTCAAGTTGATTTTGAGGAGTCTGATAATGAGCCTATTGTAAGTTCTAGTCGTGAAGACTTGGATCAGTAACATTCTTCATTGGAGAAAGTGAATCTCCAAAGCTCTCGGAGAGGTTTTTGATGATGAAGCTATTGGAGTTGCTTTAGGCCTAAATCTTCTCCAAATTTTCAAGCATCTTCTTAAGGAGATCAGGAGAAGTTCTCTTCTCTCTTAAAGCTTGTGAATTTGAAGTGTATGAGATTCCTAGCCACTCATTATGAAGTGTTTAAGTTTGTTAAGCTACAAGTCTTATCGCAACTGATTCTGTGTTTACTCCAGTTTTGGTACTCTTTATTAAAAGCAGTAAAGTAAAGTAGACATCAATTTACATGGAAACTTGAGTATCGAGAGAAAAACCATGATTGGCTTTCTTATTAATTTCTCACATTAACAAAAGATTCATTACCATCGGTTTCTGTTCTTACCTCAATCTCATCAACAATGGCCTTTTCTACCATATCTTTAGGAACAACAATATCAGATCTGTCATTCTCACTCATTTTACTATCAACTCATGATTCAATAGGATTAGTCATTCCTTGATCTTGAGGAGGTTCAAAGTCTTGGATCGGAGCCAGCTGATCAATAGAGGACTCAATTTTCTTTATGAGATTTCTTCTATAGTAAGTTCTTCAGGGAACTTGGTTTGTGGGTAGGACCATGGGATGAGGATCAGAGTCATGTAAGGTAATAGGAGTAGGATTGATAGACTCTAAGGTATAGTTAGACTCTTCACTCACACTCTCTCCCTCCTTAAAGATGGCTAATGGGAAAGAAGGGTCGATCCTCACAAAAGGTGACATCCATAGTGACAAAGTATTTACAAAAAGGAGGATGGAAACAATTATAGCCTCGCCGATGAAGAGGATACTTAACAAACACAAACGCTTGAGCCCGAGGGGTAAATTTGGTTTGATTAGGAGTCTAGGACCAAAACTATGGACATACATTGTACACCCAAACATAAGAAGGGGAACCTCAGAAGTTAGGCGGGTAGAGGGACAACATAAGGAAATTGCTTCCAATAGGTGACGGTTTTTTTGCTCGGCAACCCCATTTTGTTTAGGGGTGTAAGCATATGAGCTTTGGTGAACTATTCCCTTGGAGGCTAGGAAATCATTAAGGGTATGGTTTTGAAACTGTTGACCATTATGACTCCAAAGAATTGCAATTTTAGCATTGAACTGCATTTTGATGGTCTGATAAAAGTTCTGGAAAACATAGGAAACTTCAAATTTATCAGTGATGAGAAAGACCCAGGTAAGGTAGGTATGATCATCAATAAAAGTCACAAACCACCGTTTCCCAGAGAAGGTAGTGAACTTGGATGGATCCCAAACTTCACTATGGATAAGGGTGAATGGTTGGGTTGGTTTATATGTTTGTGAGGGGAAGGAGACTTGATGTTCTTTGGCCTGAATACACACATCACAAGATAAAGAGGAGACATCAACTTTAGAGAAGAGATTGGGAAATAAATACTTCATATATGTAAAGTTTGGGTGGCCCAACCAGAAATGCCACAACATACAATCTTGTTTGGGAATAGTAAAATATGAAGACAATAAACTAGTCCTAGAGATACTACTAGCAGAGTATCATCGTCAAGGAGATAGAGTCCCCTGCTATGCTGGGTAGTGTTAATTATCCTTCCCGAGCTCAAGTCTTGAAAAGAAAGAAAATTAGGCAAGAAAGTAGCTTGCAGTTCAGCTCACGAGTGATCTTGCTTATAAATATCAAATTAGGAAACCTTAGACACATGCAAAACATTGTGGAGGGATAGCCCTTCGAAAGAAGAAATTTGGCCCTTCCCAGCAATTGGAGCTAAAGAACCATCAACCATTATGATCTTTTCATTACCAGCACATATAATATAAATAACAAAATTCTCAGAGGAACTTGTCAAATGATTGTAGCCCTCGAGTCTAGGATCCAAGGATTATTCCCATCAACACTGATAAGACTAAGGAACTGAGGTATACCTGACTGAGCAGTGTCTCCTAGAGTGGAGGGTAGACTGGGACTGCTTTGGTTTACAGTAGGGCCAAATGGTTGGGAAGTGCCAACAAACTCACTCATTTAATCACGCCCTGAACTTTGTTTATCATTGGAGGAATGTTTCTTACCTCTTGAGGGATGACCATGAAGTTTCTAACACCGATCCTTAGTGTGCCATTGTTTCTTGCAATGCTCTCATATAAAGATTAGCTTCCCGTTATTCTTCTCACTGTCATGGGTTGAGGATCTAGCATTGAATGCAGCGGAGTTAGTAGCAGGAGTAGTCAGAACTGTCATGGCATTTGTACGGTCTTCTTGAAGACGCACTTTAAGTCATAACACACTTCCATTAAGGAGGTAAGAGGTCTCTATCCAAGTATATGACCACAGACAATGTCAAACTTGGGGTTGAGACTTGTAAGGAAGTCATAAATTCGATAAGCTTCTTCAAGTCTAGCATATTGTATACCATCATTCAGAGTATCCCATATCGTCTCTCTGCACAGGTCCATCTCTTGCCAGAGTAGAGAGTTTATTGAAGTAGGTCACATCCAAAGTTTCTTGCTTGCAATCATGGACTTGTTTCCTTAGTGTATGAGAAGCGTTTTGACGCTTTGAATAGAGTTTCTGAGTTGCGTTCCCTCTCCAGAAACGTTTCAGAGCATCATCGGGTGGGGGATGAAGAGTCTTCTCTGTCAGAAAACTGAATTATTGATGACCCTCAAGAAATATTTTGATTGATTGAGACTGGAAAAGTAATTTTGACCATTTAGCTTCTCTCTTGGAAAGACATTTGTAGATGGTGCTCAATAGCTCGTTATAGAATTTGAGGATAAGTAAGGGAGCGAAGTTATCGGGATTTTAGAATACATTGGCAAGATGGTTGGTTTGGATTGCGTCGAAGATTCACCAACTTCAAACTCTGATTTATTATGGACTTGATTGATCTCGGTACCATGGACATGCGGCTGCTGTAAAGAATCAAAGGACAACGGTGAGTGAAACAATGGCAGTCCATAAATGAAGGACAGTGGCAGTGTGTGGAGGTGCAACTGACTAGAAGGGCGGCTGGACTTGGGAAGACAGGTGGGAGTAGACCCGCTGAGCAGGGGAGGCATTGGGTGACAGTGCGTGAGGGTACGAGCCTGGCAGCGGCGGCGCATGGCCGGTCAATTGAAGTGCGTGCGACTGGTTTTCGCCATTGGGCTGCACGACTTACTCTAAGGGTAGGCCCACTGTGATTGTCGGCATGTTCTAAAGTTGGTGGAGCAACTTTTCCATGGCGGTAGTGACAGTGAAGGCGGCTGTCTCTGTTTGGGTTTCATCTACATTGTGTCTAGGATTTCATCTTTACCTAGCTCTGATACCATGTTAAAAGCGGTAAAGTAGAGTAGATACCATAGTTACCTAGTTATGTGGAAACGCGAGTATCGGAAGAAAAACTACAATTGACTTTCTTATTAATTTCTCATTTTAACAAAAGATACAAGAGTGAAGATAAATAGGTTATAACTTATGATAAAAAAGGAAAGGATATTATGAATCCTTTCTTGGGTCAAGCCCACTAATTCTAACACTCTTTTTGACTTTGTTGTTCCAATTGGCTTCCAGCTTTTCATTCGTTTATTTATTTGGGTGACTCCAGATCCGGATATGTATTCCTTGTTTGTGGTTGGTTTGTATTTCACTTTCTTTTATCATAGTATTTTCCCCTGTGGTTGGTTGGTTAGTTGTTTTTTGGCCTAATTTGGATTTTTTTTGGTGTTTTGTGTTTTGTTTAGTTTATGTTTTTGTTTTAAGGCCATGTTTACCGAACTATAATGAAAATTGATGTAATTGTAATGAAATTTCATTGATGGATTAATTGTAATGAGTTTGAATCACAAATGTAAATGAGTTGCTTTTGATCGTATTTACTTAGAATTTTGAATTTTGTTACATTTACCCTTACCTCTAAGGGTCAAGTGGTAGAAGTATCAAAATTCATAATTTTTTCCTCTAGAACAATATTGGTAACCGTAGCGGTACAACATAATTTTCAGACAATTGGATTGAGCACTCTTTGCTCGTCAATCAATTTGTGTTTTTCTCAATTACAGATTTGGAGGTGGATCACATGTGTCATTATAGGTGTAGAACACAAGTAAACAACACTAAAAGTATCAAATGAAATCCACTTTTCAACAACGGGGTAAATGTGGCCTAAATGTATTTCTTTCTTGTTCAGTTCCATTTTCTAATTGTTGGTTCTTTTTGGTGTTTTCCGATATTTCCTTCCTAGGGAGGTTGTATCCCTGAATTTTTTTCCCGTATGTCTATGCATGTTTGTTTCTTGTTTTTCTTAAAAAAGTTAGTTGGTGCATTAGGATTTAGGATGTGATTCGTTCGTTACTATTGCACCTGAATGGTTGTAAGATTGTCAATGAATTAGATTTCTTCATTAAGCTCAACATCCAAATTATACTTTGCCAATGGCTGAAGAAAGTACGAATCATCCTAACTTAGAAATTGTATTGTTTCTAATAGCCAAAATACATGTGTGTGTGTATATATTCCTTTTTGTTCTTTTTTTTCTGTCTTTATGCTGAGTTCTTGTTGCTCATTTACTTTAAAAAGGTTATGGTGGTTGATCCAGAGGCATACACTTATGATGATGAGGTGATTAAGAAAGCAGAAGCTATGGGTAAAGCTGGATTAGTGGATATTACGGCGAGAGAAGATAGTTTTATCTTCACAGTGGAATCTACAGGTGCAATCAAAGCTTCCCAGTTGATACTCAATGCCATAGATATTCTGAAACAGAAGCTGGATGCAGTCCGTCTTTCAGATGATACTGTAGAAGCAGACGATCAGTTTGGTGAGTTAGGTGCACATATGCGAGGTGGATGATCCAAACACCACCAGGCTTACCCATATGATATGTTCCTAGGAGGTGGGTGGAGGCTAACTTGAATTTTGTTTTCATGGAGATGGTGAAAAAACAATTTGTTGTTGGGTATCTTTATTAGGGATAGAAGAGTGACATCAAACATTTGCATTGAAGTTGTTAGACAATTGTTTTGATCTATTGTGAATCAAATAGCGCAGATATGCTTTCTGAAATGGCATTCCAAAAATGCTTTATCCATCTTATTGCCAAAGCAAAATTAAGCTTTGCTCATTGTGGATGAAATTGGTGAAATGATTGGGTTAAGGAGGTTTTTTTTTTTTTAATTGAACGTGTCTGTAATATGTAAAGTTGTCAACATTAGGAATGACTTTGAACTTACTTCTAAGTTCACTGATTTAAGAATTCTAATAGACAGTGGACTCGCCCAACTCAGCCTTGACATCTACTTCGAAATTAAAAATGAAAGTTATGCATAGAAAAGGTTTGGTAAAGTGCGCATAATTGAAAGGTAATTGTTATGTATTACCTTTTTTGAGGTTGATTTTCTACCAGTCGGGTTGTTGCATATACTTTTGGTCTTTAAGAGGTTTGTGGTTGATGACTATTTG

mRNA sequence

ATGGAAGGGAGTTCGTACCAGCGATTTCCAAAGGTGAAAATCCGAGAACTCCGAGATGACTACGCCAAATTCGAGCTCCGGGACACCGATGCCAGCATGGCCAACGCTCTCCGTCGCGTCATGATTGCCGAGGTTCCCACCATTGCCATTGATTTGGTAGAAATTGAAGTGAACTCCTCTGTTCTCAACGACGAGTTCATCGCCCATCGCCTCGGTCTCATTCCCCTCACCAGCGAGCGTGCCATGTCCATGCGCTTCTCTCGGGACTGTGATGCTTGCGATGGTGATGGCCAGTGTGAGTTTTGCTCTGTCGAGTTTCACCTTCGCGCCAAGTGCCACTCCGACCAAACCCTAGACGTCACCAGTAAGGATCTCTATAGTTCTGATCACACTGTTGTCCCCGTTGATTTCTCCGATTCTGCTGCAGCTACTGGTGAAGCGCTGGATACCAAAGGAATAATCATTGTGAAGCTACGTCGCGGTCAAGAGTTGAGGCTGAGAGCCATAGCTAGGAAGGGTATTGGAAAAGATCATGCAAAATGGTCGCCTGCAGCAACTGTGACATTCATGTATGAACCGAGCATTCACATCAATGAAGACCTAATGGAAACATTAACTCTAGAGGAAAAGAGAACTTGGGTTGAAAGTTGTCCGACTAGAGTATTTGAATTGGATACTGTCACTCATCAGGTTATGGTGGTTGATCCAGAGGCATACACTTATGATGATGAGGTGATTAAGAAAGCAGAAGCTATGGGTAAAGCTGGATTAGTGGATATTACGGCGAGAGAAGATAGTTTTATCTTCACAGTGGAATCTACAGGTGCAATCAAAGCTTCCCAGTTGATACTCAATGCCATAGATATTCTGAAACAGAAGCTGGATGCAGTCCGTCTTTCAGATGATACTGTAGAAGCAGACGATCAGTTTGGTGAGTTAGGTGCACATATGCGAGGTGGATGA

Coding sequence (CDS)

ATGGAAGGGAGTTCGTACCAGCGATTTCCAAAGGTGAAAATCCGAGAACTCCGAGATGACTACGCCAAATTCGAGCTCCGGGACACCGATGCCAGCATGGCCAACGCTCTCCGTCGCGTCATGATTGCCGAGGTTCCCACCATTGCCATTGATTTGGTAGAAATTGAAGTGAACTCCTCTGTTCTCAACGACGAGTTCATCGCCCATCGCCTCGGTCTCATTCCCCTCACCAGCGAGCGTGCCATGTCCATGCGCTTCTCTCGGGACTGTGATGCTTGCGATGGTGATGGCCAGTGTGAGTTTTGCTCTGTCGAGTTTCACCTTCGCGCCAAGTGCCACTCCGACCAAACCCTAGACGTCACCAGTAAGGATCTCTATAGTTCTGATCACACTGTTGTCCCCGTTGATTTCTCCGATTCTGCTGCAGCTACTGGTGAAGCGCTGGATACCAAAGGAATAATCATTGTGAAGCTACGTCGCGGTCAAGAGTTGAGGCTGAGAGCCATAGCTAGGAAGGGTATTGGAAAAGATCATGCAAAATGGTCGCCTGCAGCAACTGTGACATTCATGTATGAACCGAGCATTCACATCAATGAAGACCTAATGGAAACATTAACTCTAGAGGAAAAGAGAACTTGGGTTGAAAGTTGTCCGACTAGAGTATTTGAATTGGATACTGTCACTCATCAGGTTATGGTGGTTGATCCAGAGGCATACACTTATGATGATGAGGTGATTAAGAAAGCAGAAGCTATGGGTAAAGCTGGATTAGTGGATATTACGGCGAGAGAAGATAGTTTTATCTTCACAGTGGAATCTACAGGTGCAATCAAAGCTTCCCAGTTGATACTCAATGCCATAGATATTCTGAAACAGAAGCTGGATGCAGTCCGTCTTTCAGATGATACTGTAGAAGCAGACGATCAGTTTGGTGAGTTAGGTGCACATATGCGAGGTGGATGA

Protein sequence

MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDTVTHQVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLSDDTVEADDQFGELGAHMRGG

Homology

[Close]

BLAST of CsaV3_2G010370 vs. NCBI nr
Match: XP_004138895.1 (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3 [Cucumis sativus] >KGN61343.1 hypothetical protein Csa_2G093850 [Cucumis sativus])

HSP 1 Score: 627.5 bits (1617), Expect = 2.5e-176
Identity = 320/320 (100.00%), Postives = 320/320 (100.00%), Query Frame = 0


Query: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDTVTHQVMVVDPEAYT 240
           WSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDTVTHQVMVVDPEAYT
Sbjct: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDTVTHQVMVVDPEAYT 240

Query: 241 YDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300
           YDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS
Sbjct: 241 YDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300

Query: 301 DDTVEADDQFGELGAHMRGG 321
           DDTVEADDQFGELGAHMRGG
Sbjct: 301 DDTVEADDQFGELGAHMRGG 320

[Close]

BLAST of CsaV3_2G010370 vs. NCBI nr
Match: XP_008441761.1 (PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerases II, IV and V subunit 3-like [Cucumis melo])

HSP 1 Score: 621.3 bits (1601), Expect = 1.8e-174
Identity = 317/320 (99.06%), Postives = 318/320 (99.38%), Query Frame = 0


Query: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDTVTHQVMVVDPEAYT 240
           WSPAATVTFMYEPSIHINEDLMETLTLEEK TWVESCPTRVFELD VTHQVMVV+PEAYT
Sbjct: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKXTWVESCPTRVFELDPVTHQVMVVEPEAYT 240

Query: 241 YDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300
           YDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS
Sbjct: 241 YDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300

Query: 301 DDTVEADDQFGELGAHMRGG 321
           DDTVEADDQFGELGAHMRGG
Sbjct: 301 DDTVEADDQFGELGAHMRGG 320

[Close]

BLAST of CsaV3_2G010370 vs. NCBI nr
Match: XP_022147788.1 (DNA-directed RNA polymerases II, IV and V subunit 3-like [Momordica charantia] >XP_022147789.1 DNA-directed RNA polymerases II, IV and V subunit 3-like [Momordica charantia])

HSP 1 Score: 607.8 bits (1566), Expect = 2.1e-170
Identity = 308/320 (96.25%), Postives = 316/320 (98.75%), Query Frame = 0


Query: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           MEG+SYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGASYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           TSKDL SSDHTVVPVDF+DSAAA+GE LDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 TSKDLISSDHTVVPVDFADSAAASGEVLDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDTVTHQVMVVDPEAYT 240
           WSPAATVTFMYEPSIHINEDLMETLTLEE++TWVESCPTRVFE+D  THQV+VVDPEAYT
Sbjct: 181 WSPAATVTFMYEPSIHINEDLMETLTLEERKTWVESCPTRVFEVDPNTHQVVVVDPEAYT 240

Query: 241 YDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300
           YDDEVIKKAEAMGKAGLVDITA+EDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS
Sbjct: 241 YDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300

Query: 301 DDTVEADDQFGELGAHMRGG 321
           DDTVEADDQFGELGAHMRGG
Sbjct: 301 DDTVEADDQFGELGAHMRGG 320

[Close]

BLAST of CsaV3_2G010370 vs. NCBI nr
Match: XP_022927752.1 (DNA-directed RNA polymerases II, IV and V subunit 3-like [Cucurbita moschata] >XP_022927753.1 DNA-directed RNA polymerases II, IV and V subunit 3-like [Cucurbita moschata] >XP_022988851.1 DNA-directed RNA polymerases II, IV and V subunit 3-like [Cucurbita maxima] >XP_022988852.1 DNA-directed RNA polymerases II, IV and V subunit 3-like [Cucurbita maxima] >XP_023530056.1 DNA-directed RNA polymerases II, IV and V subunit 3-like [Cucurbita pepo subsp. pepo] >XP_023530057.1 DNA-directed RNA polymerases II, IV and V subunit 3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 605.9 bits (1561), Expect = 7.9e-170
Identity = 308/320 (96.25%), Postives = 314/320 (98.12%), Query Frame = 0


Query: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           MEG+SYQRFPKVKIRELRDDYAKFEL DTD SMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGASYQRFPKVKIRELRDDYAKFELHDTDVSMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           +SKDLYSSDHTVVPVDFSDSAAA GEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 SSKDLYSSDHTVVPVDFSDSAAAAGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDTVTHQVMVVDPEAYT 240
           WSPAATVTFMYEPSIHINEDLMETLTLEEK +WVES PT+VFELD VTHQV+VVDPEAYT
Sbjct: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKTSWVESSPTKVFELDPVTHQVLVVDPEAYT 240

Query: 241 YDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300
           YDDEVIKKAEAMGKAGLVDITA+EDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS
Sbjct: 241 YDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300

Query: 301 DDTVEADDQFGELGAHMRGG 321
           DDTVEADDQFGELGAHMRGG
Sbjct: 301 DDTVEADDQFGELGAHMRGG 320

[Close]

BLAST of CsaV3_2G010370 vs. NCBI nr
Match: XP_021602088.1 (DNA-directed RNA polymerases II, IV and V subunit 3 [Manihot esculenta] >OAY22316.1 hypothetical protein MANES_S011800 [Manihot esculenta])

HSP 1 Score: 565.5 bits (1456), Expect = 1.2e-157
Identity = 287/320 (89.69%), Postives = 306/320 (95.62%), Query Frame = 0


Query: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           MEG SYQRFP+VKIREL+DDYAKFELRDTDAS+ANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGVSYQRFPRVKIRELKDDYAKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE+CSVEFHLRAKC +DQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEYCSVEFHLRAKCITDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           TSKDLYSSDHTVVPVDFSD A    ++ D KGIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 TSKDLYSSDHTVVPVDFSDPAGY--DSPDQKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDTVTHQVMVVDPEAYT 240
           WSPAATVTFMYEP IHINEDLMETLTLEEK++WVES PT+VF++D VT QV+VVDPEAYT
Sbjct: 181 WSPAATVTFMYEPDIHINEDLMETLTLEEKQSWVESSPTKVFDIDPVTQQVVVVDPEAYT 240

Query: 241 YDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300
           YDDEVIKKAEAMGK GLVDI+A+EDSFIFTVESTGAIKASQL+LNAI++LKQKLDAVRLS
Sbjct: 241 YDDEVIKKAEAMGKLGLVDISAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLS 300

Query: 301 DDTVEADDQFGELGAHMRGG 321
           +DTVEADDQFGELGAHMRGG
Sbjct: 301 EDTVEADDQFGELGAHMRGG 318

[Close]

BLAST of CsaV3_2G010370 vs. TAIR10
Match: AT2G15430.1 (DNA-directed RNA polymerase family protein)

HSP 1 Score: 518.5 bits (1334), Expect = 3.0e-147
Identity = 260/320 (81.25%), Postives = 296/320 (92.50%), Query Frame = 0


Query: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           M+G++YQRFPK+KIREL+DDYAKFELR+TD SMANALRRVMI+EVPT+AIDLVEIEVNSS
Sbjct: 1   MDGATYQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEF L +KC +DQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           TS+DLYS+D TV PVDF+  ++ + ++ + KGIIIVKLRRGQEL+LRAIARKGIGKDHAK
Sbjct: 121 TSRDLYSADPTVTPVDFTIDSSVS-DSSEHKGIIIVKLRRGQELKLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDTVTHQVMVVDPEAYT 240
           WSPAATVTFMYEP I INED+M+TL+ EEK   +ES PT+VF +D VT QV+VVDPEAYT
Sbjct: 181 WSPAATVTFMYEPDIIINEDMMDTLSDEEKIDLIESSPTKVFGMDPVTRQVVVVDPEAYT 240

Query: 241 YDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300
           YD+EVIKKAEAMGK GL++I+ ++DSFIFTVESTGA+KASQL+LNAID+LKQKLDAVRLS
Sbjct: 241 YDEEVIKKAEAMGKPGLIEISPKDDSFIFTVESTGAVKASQLVLNAIDLLKQKLDAVRLS 300

Query: 301 DDTVEADDQFGELGAHMRGG 321
           DDTVEADDQFGELGAHMRGG
Sbjct: 301 DDTVEADDQFGELGAHMRGG 319

[Close]

BLAST of CsaV3_2G010370 vs. TAIR10
Match: AT2G15400.1 (DNA-directed RNA polymerase family protein)

HSP 1 Score: 481.1 bits (1237), Expect = 5.3e-136
Identity = 245/320 (76.56%), Postives = 283/320 (88.44%), Query Frame = 0


Query: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           M+G +YQRFP VKIREL+DDYAKFELR+TD SMANALRRVMI+EVPT+AI LV+IEVNSS
Sbjct: 1   MDGVTYQRFPTVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIA RL LIPLTSERAMSMRF +DC+ C+GD  CEFCSVEF L AKC +DQTLDV
Sbjct: 61  VLNDEFIAQRLSLIPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKCVTDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           TS+DLYS+D TV PVDF+ S ++T ++ + KGIII KLRRGQEL+L+A+ARKGIGKDHAK
Sbjct: 121 TSRDLYSADPTVTPVDFT-SNSSTSDSSEHKGIIIAKLRRGQELKLKALARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDTVTHQVMVVDPEAYT 240
           WSPAATVT+MYEP I INE++M TLT EEK   +ES PT+VF +D VT QV+VVDPEAYT
Sbjct: 181 WSPAATVTYMYEPDIIINEEMMNTLTDEEKIDLIESSPTKVFGIDPVTGQVVVVDPEAYT 240

Query: 241 YDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300
           YD+EVIKKAEAMGK GL++I  + DSF+FTVESTGA+KASQL+LNAIDILKQKLDA+RLS
Sbjct: 241 YDEEVIKKAEAMGKPGLIEIHPKHDSFVFTVESTGALKASQLVLNAIDILKQKLDAIRLS 300

Query: 301 DDTVEADDQFGELGAHMRGG 321
           D+TVEADDQFGELGAHMR G
Sbjct: 301 DNTVEADDQFGELGAHMREG 319

[Close]

BLAST of CsaV3_2G010370 vs. TAIR10
Match: AT1G60850.2 (DNA-directed RNA polymerase family protein)

HSP 1 Score: 129.0 bits (323), Expect = 5.1e-30
Identity = 101/319 (31.66%), Postives = 157/319 (49.22%), Query Frame = 0


Query: 3   GSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVL 62
           G+ Y  F KV +  L     +F++   DA+ ANA RR++IAEVP++AI+ V I  N+SV+
Sbjct: 68  GNFYDNF-KVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSVI 127

Query: 63  NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQ-TLDVT 122
            DE +AHR+GLIP+ ++  +    S      + D   E  ++ F L  KC  ++  L V 
Sbjct: 128 IDEVLAHRMGLIPIAADPRLFEYLS------EHDQANEKNTIVFKLHVKCPKNRPRLKVL 187

Query: 123 SKDL-----------YSSDHTVVP---VDFSDSAAATGEALDTK------GIIIVKLRRG 182
           + DL            S + T  P     FS S  +  E  +         I+I KL  G
Sbjct: 188 TSDLKWLPNGSELLRESENKTSKPKTYTSFSCSQDSLPEFANNPITPCDLDILIAKLAPG 247

Query: 183 QELRLRAIARKGIGKDHAKWSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRV 242
           QE+ L A A KGIGK HAKWSP  T  +   P + +  ++ + L        V  CP  V
Sbjct: 248 QEIELEAHAVKGIGKTHAKWSPVGTAWYRMHPEVVLRGEVEDELA----ERLVNVCPQNV 307

Query: 243 FELDTV---THQVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIK 298
           F+++ +     +  V  P   T   E ++  + +     VD+ + ++ FIF +ESTG++ 
Sbjct: 308 FDIEDMGKGKKRATVAQPRKCTLCKECVRDDDLVDH---VDLGSVKNHFIFNIESTGSLP 367

[Close]

BLAST of CsaV3_2G010370 vs. TAIR10
Match: AT1G60620.1 (RNA polymerase I subunit 43)

HSP 1 Score: 117.9 bits (294), Expect = 1.2e-26
Identity = 96/311 (30.87%), Postives = 150/311 (48.23%), Query Frame = 0


Query: 11  KVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
           KV +  L +    F++    A +ANA RR+++AE+P++AI+ V +  N+SV+ DE +AHR
Sbjct: 82  KVDVISLTETDMVFDMIGVHAGIANAFRRILLAELPSMAIEKVYVANNTSVIQDEVLAHR 141

Query: 71  LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC-HSDQTLDVTSKDL---- 130
           LGLIP+ ++  +    S      + D   E  ++ F L  KC   D    V + +L    
Sbjct: 142 LGLIPIAADPRLFEYLS------ENDQPNEKNTIVFKLHVKCLKGDPRRKVLTSELKWLP 201

Query: 131 -------YSSDHTVVP---VDFSDSAAATGEALDT------KGIIIVKLRRGQELRLRAI 190
                   S   T  P     F+ S  +  E  +       K I+I KL  GQE+ L A 
Sbjct: 202 NGSELIKESGGSTTTPKTYTSFNHSQDSFPEFAENPIRPTLKDILIAKLGPGQEIELEAH 261

Query: 191 ARKGIGKDHAKWSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDTV-- 250
           A KGIGK HAKWSP AT  +   P +     L++    +     V+ CP +VF+++ +  
Sbjct: 262 AVKGIGKTHAKWSPVATAWYRMLPEV----VLLKEFEGKHAEELVKVCPKKVFDIEDMGQ 321

Query: 251 -THQVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNA 298
              +  V  P   +   E I+  + +     VD+   ++ FIFT+ESTG+     L   A
Sbjct: 322 GRKRATVARPRDCSLCRECIR--DGVEWEDQVDLRRVKNHFIFTIESTGSQPPEVLFNEA 380

[Close]

BLAST of CsaV3_2G010370 vs. Swiss-Prot
Match: sp|Q39211|NRPB3_ARATH (DNA-directed RNA polymerases II, IV and V subunit 3 OS=Arabidopsis thaliana OX=3702 GN=NRPB3 PE=1 SV=1)

HSP 1 Score: 518.5 bits (1334), Expect = 5.4e-146
Identity = 260/320 (81.25%), Postives = 296/320 (92.50%), Query Frame = 0


Query: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           M+G++YQRFPK+KIREL+DDYAKFELR+TD SMANALRRVMI+EVPT+AIDLVEIEVNSS
Sbjct: 1   MDGATYQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEF L +KC +DQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           TS+DLYS+D TV PVDF+  ++ + ++ + KGIIIVKLRRGQEL+LRAIARKGIGKDHAK
Sbjct: 121 TSRDLYSADPTVTPVDFTIDSSVS-DSSEHKGIIIVKLRRGQELKLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDTVTHQVMVVDPEAYT 240
           WSPAATVTFMYEP I INED+M+TL+ EEK   +ES PT+VF +D VT QV+VVDPEAYT
Sbjct: 181 WSPAATVTFMYEPDIIINEDMMDTLSDEEKIDLIESSPTKVFGMDPVTRQVVVVDPEAYT 240

Query: 241 YDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300
           YD+EVIKKAEAMGK GL++I+ ++DSFIFTVESTGA+KASQL+LNAID+LKQKLDAVRLS
Sbjct: 241 YDEEVIKKAEAMGKPGLIEISPKDDSFIFTVESTGAVKASQLVLNAIDLLKQKLDAVRLS 300

Query: 301 DDTVEADDQFGELGAHMRGG 321
           DDTVEADDQFGELGAHMRGG
Sbjct: 301 DDTVEADDQFGELGAHMRGG 319

[Close]

BLAST of CsaV3_2G010370 vs. Swiss-Prot
Match: sp|Q39212|RPD3B_ARATH (DNA-directed RNA polymerases IV and V subunit 3B OS=Arabidopsis thaliana OX=3702 GN=NRPD3B PE=1 SV=2)

HSP 1 Score: 481.1 bits (1237), Expect = 9.6e-135
Identity = 245/320 (76.56%), Postives = 283/320 (88.44%), Query Frame = 0


Query: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           M+G +YQRFP VKIREL+DDYAKFELR+TD SMANALRRVMI+EVPT+AI LV+IEVNSS
Sbjct: 1   MDGVTYQRFPTVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIA RL LIPLTSERAMSMRF +DC+ C+GD  CEFCSVEF L AKC +DQTLDV
Sbjct: 61  VLNDEFIAQRLSLIPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKCVTDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           TS+DLYS+D TV PVDF+ S ++T ++ + KGIII KLRRGQEL+L+A+ARKGIGKDHAK
Sbjct: 121 TSRDLYSADPTVTPVDFT-SNSSTSDSSEHKGIIIAKLRRGQELKLKALARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDTVTHQVMVVDPEAYT 240
           WSPAATVT+MYEP I INE++M TLT EEK   +ES PT+VF +D VT QV+VVDPEAYT
Sbjct: 181 WSPAATVTYMYEPDIIINEEMMNTLTDEEKIDLIESSPTKVFGIDPVTGQVVVVDPEAYT 240

Query: 241 YDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300
           YD+EVIKKAEAMGK GL++I  + DSF+FTVESTGA+KASQL+LNAIDILKQKLDA+RLS
Sbjct: 241 YDEEVIKKAEAMGKPGLIEIHPKHDSFVFTVESTGALKASQLVLNAIDILKQKLDAIRLS 300

Query: 301 DDTVEADDQFGELGAHMRGG 321
           D+TVEADDQFGELGAHMR G
Sbjct: 301 DNTVEADDQFGELGAHMREG 319

[Close]

BLAST of CsaV3_2G010370 vs. Swiss-Prot
Match: sp|Q54DH7|RPB3_DICDI (DNA-directed RNA polymerase II subunit rpb3 OS=Dictyostelium discoideum OX=44689 GN=polr2c PE=3 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 7.0e-69
Identity = 145/297 (48.82%), Postives = 198/297 (66.67%), Query Frame = 0


Query: 4   SSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLN 63
           S   R P+++I E+++D   F L +TD S+ANALRRVMIAEVPT+ IDLVE E N+SVL 
Sbjct: 6   SQLTRQPELEILEIKNDSIIFILSNTDISVANALRRVMIAEVPTMCIDLVEFESNNSVLC 65

Query: 64  DEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSK 123
           DEFIAHRLGLIPL S+      ++RDC   D   +C+ CSVE  L  KC  ++  DVTS 
Sbjct: 66  DEFIAHRLGLIPLVSDNIDKFCYTRDCSCSD---RCDQCSVELRLNVKCTENRPRDVTSS 125

Query: 124 DLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSP 183
           DL S +  V+PV  S   ++  E    + I IVKLRRGQE++LRAIA+KG+GK+HAKWSP
Sbjct: 126 DLLSQNSAVIPVS-SQVTSSNSE----QEIPIVKLRRGQEIKLRAIAKKGVGKEHAKWSP 185

Query: 184 AATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELD--TVTHQVMVVDPEAYTY 243
           +   T+ ++P I +N++ ++ LT ++K  WV SCPT+V+       T QV + DP    Y
Sbjct: 186 SCVATYQFQPIIVLNQNRIDELTDQQKEEWVGSCPTKVYSYSPHQSTQQVTIEDPLRCVY 245

Query: 244 DDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQKLDAVR 299
             E  KKAE+ GK  LV +  ++D FIFTVES+GA+K   ++L AI I+K+KL  ++
Sbjct: 246 CLECKKKAESFGKPDLVHLEQKQDKFIFTVESSGALKPEDIVLYAIQIIKRKLTDIQ 294

[Close]

BLAST of CsaV3_2G010370 vs. Swiss-Prot
Match: sp|Q3T0Q3|RPB3_BOVIN (DNA-directed RNA polymerase II subunit RPB3 OS=Bos taurus OX=9913 GN=POLR2C PE=1 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 2.3e-48
Identity = 119/290 (41.03%), Postives = 167/290 (57.59%), Query Frame = 0


Query: 6   YQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
           Y   P V+I EL D+  KF + +TD ++AN++RRV IAEVP IAID V+I+ NSSVL+DE
Sbjct: 3   YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62

Query: 66  FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 125
           FIAHRLGLIPLTS+  +  +++SRDC     +  C  CSVEF L  +C+ DQT  VTS+D
Sbjct: 63  FIAHRLGLIPLTSDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 122

Query: 126 LYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 185
           L S+   V+PV   +      + ++   I+IVKLR+GQELRLRA A+KG GK+HAKW+P 
Sbjct: 123 LISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 182

Query: 186 ATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDTVTHQVMVVDPEAYTYDDE 245
           A V F Y+P     ++ +      +   W +S      ELD         D     YD  
Sbjct: 183 AGVAFEYDP-----DNALRHTVYPKPEEWPKS---EYSELDE--------DESQAPYDP- 242

Query: 246 VIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQKL 295
                             + + F + VES G+++   ++L+A+  LK+KL
Sbjct: 243 ----------------NGKPERFYYNVESCGSLRPETIVLSALSGLKKKL 256

[Close]

BLAST of CsaV3_2G010370 vs. Swiss-Prot
Match: sp|P97760|RPB3_MOUSE (DNA-directed RNA polymerase II subunit RPB3 OS=Mus musculus OX=10090 GN=Polr2c PE=1 SV=2)

HSP 1 Score: 192.6 bits (488), Expect = 6.8e-48
Identity = 118/290 (40.69%), Postives = 167/290 (57.59%), Query Frame = 0


Query: 6   YQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
           Y   P V+I EL ++  KF + +TD ++AN++RRV IAEVP IAID V+I+ NSSVL+DE
Sbjct: 3   YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62

Query: 66  FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 125
           FIAHRLGLIPLTS+  +  +++SRDC     +  C  CSVEF L  +C+ DQT  VTS+D
Sbjct: 63  FIAHRLGLIPLTSDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 122

Query: 126 LYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 185
           L S+   V+PV   +      + ++   I+IVKLR+GQELRLRA A+KG GK+HAKW+P 
Sbjct: 123 LISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 182

Query: 186 ATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDTVTHQVMVVDPEAYTYDDE 245
           A V F Y+P     ++ +      +   W +S      ELD         D     YD  
Sbjct: 183 AGVAFEYDP-----DNALRHTVYPKPEEWPKS---EYSELDE--------DESQAPYDP- 242

Query: 246 VIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQKL 295
                             + + F + VES G+++   ++L+A+  LK+KL
Sbjct: 243 ----------------NGKPERFYYNVESCGSLRPETIVLSALSGLKKKL 256

[Close]

BLAST of CsaV3_2G010370 vs. TrEMBL
Match: tr|A0A0A0LHS1|A0A0A0LHS1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G093850 PE=4 SV=1)

HSP 1 Score: 627.5 bits (1617), Expect = 1.7e-176
Identity = 320/320 (100.00%), Postives = 320/320 (100.00%), Query Frame = 0


Query: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDTVTHQVMVVDPEAYT 240
           WSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDTVTHQVMVVDPEAYT
Sbjct: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDTVTHQVMVVDPEAYT 240

Query: 241 YDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300
           YDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS
Sbjct: 241 YDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300

Query: 301 DDTVEADDQFGELGAHMRGG 321
           DDTVEADDQFGELGAHMRGG
Sbjct: 301 DDTVEADDQFGELGAHMRGG 320

[Close]

BLAST of CsaV3_2G010370 vs. TrEMBL
Match: tr|A0A1S3B3P9|A0A1S3B3P9_CUCME (LOW QUALITY PROTEIN: DNA-directed RNA polymerases II, IV and V subunit 3-like OS=Cucumis melo OX=3656 GN=LOC103485820 PE=4 SV=1)

HSP 1 Score: 621.3 bits (1601), Expect = 1.2e-174
Identity = 317/320 (99.06%), Postives = 318/320 (99.38%), Query Frame = 0


Query: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDTVTHQVMVVDPEAYT 240
           WSPAATVTFMYEPSIHINEDLMETLTLEEK TWVESCPTRVFELD VTHQVMVV+PEAYT
Sbjct: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKXTWVESCPTRVFELDPVTHQVMVVEPEAYT 240

Query: 241 YDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300
           YDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS
Sbjct: 241 YDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300

Query: 301 DDTVEADDQFGELGAHMRGG 321
           DDTVEADDQFGELGAHMRGG
Sbjct: 301 DDTVEADDQFGELGAHMRGG 320

[Close]

BLAST of CsaV3_2G010370 vs. TrEMBL
Match: tr|A0A199UCF5|A0A199UCF5_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_S011800 PE=4 SV=1)

HSP 1 Score: 565.5 bits (1456), Expect = 7.8e-158
Identity = 287/320 (89.69%), Postives = 306/320 (95.62%), Query Frame = 0


Query: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           MEG SYQRFP+VKIREL+DDYAKFELRDTDAS+ANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGVSYQRFPRVKIRELKDDYAKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE+CSVEFHLRAKC +DQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEYCSVEFHLRAKCITDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           TSKDLYSSDHTVVPVDFSD A    ++ D KGIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 TSKDLYSSDHTVVPVDFSDPAGY--DSPDQKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDTVTHQVMVVDPEAYT 240
           WSPAATVTFMYEP IHINEDLMETLTLEEK++WVES PT+VF++D VT QV+VVDPEAYT
Sbjct: 181 WSPAATVTFMYEPDIHINEDLMETLTLEEKQSWVESSPTKVFDIDPVTQQVVVVDPEAYT 240

Query: 241 YDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300
           YDDEVIKKAEAMGK GLVDI+A+EDSFIFTVESTGAIKASQL+LNAI++LKQKLDAVRLS
Sbjct: 241 YDDEVIKKAEAMGKLGLVDISAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLS 300

Query: 301 DDTVEADDQFGELGAHMRGG 321
           +DTVEADDQFGELGAHMRGG
Sbjct: 301 EDTVEADDQFGELGAHMRGG 318

[Close]

BLAST of CsaV3_2G010370 vs. TrEMBL
Match: tr|A0A2P5AW75|A0A2P5AW75_PARAD (DNA-directed RNA polymerase, alpha subunit OS=Parasponia andersonii OX=3476 GN=PanWU01x14_294170 PE=4 SV=1)

HSP 1 Score: 561.2 bits (1445), Expect = 1.5e-156
Identity = 286/320 (89.38%), Postives = 301/320 (94.06%), Query Frame = 0


Query: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           MEG SYQRFPK+KIRE++DD+ KFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGKSYQRFPKIKIREMKDDFLKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC SDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCMSDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           TSKDLY+ DHTVVPVDFSD A    E+ + +GIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 TSKDLYTPDHTVVPVDFSDPAG--DESAEQRGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDTVTHQVMVVDPEAYT 240
           WSPAATVTFMYEP I INE+LMETLTLEEKR+WVES PTRVFE+D  THQV V D EAYT
Sbjct: 181 WSPAATVTFMYEPDIRINEELMETLTLEEKRSWVESSPTRVFEIDPDTHQVYVFDAEAYT 240

Query: 241 YDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300
           YDDEVIKKAEAMGKAGLVDITA+EDSFIFTVESTGAIKASQL+LNAI+ILKQKLDAVRLS
Sbjct: 241 YDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLVLNAIEILKQKLDAVRLS 300

Query: 301 DDTVEADDQFGELGAHMRGG 321
           +DTVEADDQFGELGAHMRGG
Sbjct: 301 EDTVEADDQFGELGAHMRGG 318

[Close]

BLAST of CsaV3_2G010370 vs. TrEMBL
Match: tr|A0A2P5ERE3|A0A2P5ERE3_9ROSA (DNA-directed RNA polymerase, alpha subunit OS=Trema orientalis OX=63057 GN=TorRG33x02_161440 PE=4 SV=1)

HSP 1 Score: 558.9 bits (1439), Expect = 7.3e-156
Identity = 285/320 (89.06%), Postives = 300/320 (93.75%), Query Frame = 0


Query: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           MEG SYQR PK+KIRE++DD+ KFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGKSYQRLPKIKIREMKDDFLKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC SDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCMSDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           TSKDLY+ DHTVVPVDFSD A    E+ + +GIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 TSKDLYTPDHTVVPVDFSDPAG--DESAEQRGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDTVTHQVMVVDPEAYT 240
           WSPAATVTFMYEP I INE+LMETLTLEEKR+WVES PTRVFE+D  THQV VVD EAYT
Sbjct: 181 WSPAATVTFMYEPDIRINEELMETLTLEEKRSWVESSPTRVFEIDPDTHQVYVVDAEAYT 240

Query: 241 YDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300
           YDDEVIKKAEAMGK GLVDITA+EDSFIFTVESTGAIKASQL+LNAI+ILKQKLDAVRLS
Sbjct: 241 YDDEVIKKAEAMGKPGLVDITAKEDSFIFTVESTGAIKASQLVLNAIEILKQKLDAVRLS 300

Query: 301 DDTVEADDQFGELGAHMRGG 321
           +DTVEADDQFGELGAHMRGG
Sbjct: 301 EDTVEADDQFGELGAHMRGG 318

The following BLAST results are available for this feature:

BLAST of CsaV3_2G010370 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004138895.1	2.5e-176	100.00	PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3 [Cucumis sativus]...	[more]
XP_008441761.1	1.8e-174	99.06	PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerases II, IV and V subuni...	[more]
XP_022147788.1	2.1e-170	96.25	DNA-directed RNA polymerases II, IV and V subunit 3-like [Momordica charantia] >...	[more]
XP_022927752.1	7.9e-170	96.25	DNA-directed RNA polymerases II, IV and V subunit 3-like [Cucurbita moschata] >X...	[more]
XP_021602088.1	1.2e-157	89.69	DNA-directed RNA polymerases II, IV and V subunit 3 [Manihot esculenta] >OAY2231...	[more]

BLAST of CsaV3_2G010370 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G15430.1	3.0e-147	81.25	DNA-directed RNA polymerase family protein	[more]
AT2G15400.1	5.3e-136	76.56	DNA-directed RNA polymerase family protein	[more]
AT1G60850.2	5.1e-30	31.66	DNA-directed RNA polymerase family protein	[more]
AT1G60620.1	1.2e-26	30.87	RNA polymerase I subunit 43	[more]

BLAST of CsaV3_2G010370 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q39211\|NRPB3_ARATH	5.4e-146	81.25	DNA-directed RNA polymerases II, IV and V subunit 3 OS=Arabidopsis thaliana OX=3...	[more]
sp\|Q39212\|RPD3B_ARATH	9.6e-135	76.56	DNA-directed RNA polymerases IV and V subunit 3B OS=Arabidopsis thaliana OX=3702...	[more]
sp\|Q54DH7\|RPB3_DICDI	7.0e-69	48.82	DNA-directed RNA polymerase II subunit rpb3 OS=Dictyostelium discoideum OX=44689...	[more]
sp\|Q3T0Q3\|RPB3_BOVIN	2.3e-48	41.03	DNA-directed RNA polymerase II subunit RPB3 OS=Bos taurus OX=9913 GN=POLR2C PE=1...	[more]
sp\|P97760\|RPB3_MOUSE	6.8e-48	40.69	DNA-directed RNA polymerase II subunit RPB3 OS=Mus musculus OX=10090 GN=Polr2c P...	[more]

BLAST of CsaV3_2G010370 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LHS1\|A0A0A0LHS1_CUCSA	1.7e-176	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G093850 PE=4 SV=1	[more]
tr\|A0A1S3B3P9\|A0A1S3B3P9_CUCME	1.2e-174	99.06	LOW QUALITY PROTEIN: DNA-directed RNA polymerases II, IV and V subunit 3-like OS...	[more]
tr\|A0A199UCF5\|A0A199UCF5_MANES	7.8e-158	89.69	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_S011800 PE=4 SV=1	[more]
tr\|A0A2P5AW75\|A0A2P5AW75_PARAD	1.5e-156	89.38	DNA-directed RNA polymerase, alpha subunit OS=Parasponia andersonii OX=3476 GN=P...	[more]
tr\|A0A2P5ERE3\|A0A2P5ERE3_9ROSA	7.3e-156	89.06	DNA-directed RNA polymerase, alpha subunit OS=Trema orientalis OX=63057 GN=TorRG...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0046983	protein dimerization activity
GO:0003899	DNA-directed RNA polymerase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006351	transcription, DNA-templated

Vocabulary: **INTERPRO**
Term	Definition
IPR036603	RBP11-like
IPR001514	DNA-dir_RNA_pol_30-40kDasu_CS
IPR011262	DNA-dir_RNA_pol_insert
IPR036643	RNApol_insert_sf
IPR011263	DNA-dir_RNA_pol_RpoA/D/Rpb3

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed RNA polymerase activity
molecular_function	GO:0046983	protein dimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G010370.1	CsaV3_2G010370.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011263	DNA-directed RNA polymerase, RpoA/D/Rpb3-type	SMART	SM00662	rpoldneu2	coord: 21..300 e-value: 2.0E-94 score: 329.7
IPR011263	DNA-directed RNA polymerase, RpoA/D/Rpb3-type	PFAM	PF01193	RNA_pol_L	coord: 23..294 e-value: 7.5E-22 score: 76.4
IPR036643	DNA-directed RNA polymerase, insert domain superfamily	GENE3D	G3DSA:2.170.120.12		coord: 47..179 e-value: 1.5E-87 score: 295.4
IPR036643	DNA-directed RNA polymerase, insert domain superfamily	SUPERFAMILY	SSF56553	Insert subdomain of RNA polymerase alpha subunit	coord: 46..183
None	No IPR available	GENE3D	G3DSA:3.30.1360.270		coord: 180..293 e-value: 1.5E-87 score: 295.4 coord: 11..46 e-value: 1.5E-87 score: 295.4
None	No IPR available	PANTHER	PTHR11800:SF2	DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3	coord: 5..310
None	No IPR available	PANTHER	PTHR11800	DNA-DIRECTED RNA POLYMERASE	coord: 5..310
None	No IPR available	CDD	cd07031	RNAP_II_RPB3	coord: 10..303 e-value: 3.47513E-129 score: 371.551
IPR011262	DNA-directed RNA polymerase, insert domain	PFAM	PF01000	RNA_pol_A_bac	coord: 53..182 e-value: 3.2E-33 score: 114.3
IPR001514	DNA-directed RNA polymerase, 30-40kDa subunit, conserved site	PROSITE	PS00446	RNA_POL_D_30KD	coord: 35..75
IPR036603	RNA polymerase, RBP11-like subunit	SUPERFAMILY	SSF55257	RBP11-like subunits of RNA polymerase	coord: 10..51 coord: 214..302

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_2G010370	CSPI02G07970	Wild cucumber (PI 183967)	cpicucB080
CsaV3_2G010370	Cucsa.277780	Cucumber (Gy14) v1	cgycucB426
CsaV3_2G010370	CsGy2G008250	Cucumber (Gy14) v2	cgybcucB064
CsaV3_2G010370	MELO3C008589	Melon (DHL92) v3.5.1	cucmeB144
CsaV3_2G010370	ClCG11G007460	Watermelon (Charleston Gray)	cucwcgB123
CsaV3_2G010370	Lsi11G009430	Bottle gourd (USVL1VR-Ls)	cuclsiB108
CsaV3_2G010370	MELO3C008589.2	Melon (DHL92) v3.6.1	cucmedB137
CsaV3_2G010370	Cla97C11G215950	Watermelon (97103) v2	cucwmbB110
CsaV3_2G010370	Bhi06G000824	Wax gourd	cucwgoB147

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_2G010370	Silver-seed gourd	carcucB0264
CsaV3_2G010370	Cucurbita maxima (Rimu)	cmacucB0928
CsaV3_2G010370	Cucurbita moschata (Rifu)	cmocucB0920
CsaV3_2G010370	Cucurbita moschata (Rifu)	cmocucB0926
CsaV3_2G010370	Cucurbita pepo (Zucchini)	cpecucB0118
CsaV3_2G010370	Melon (DHL92) v3.5.1	cucmeB138
CsaV3_2G010370	Melon (DHL92) v3.6.1	cucmedB131
CsaV3_2G010370	Watermelon (Charleston Gray)	cucwcgB119
CsaV3_2G010370	Watermelon (97103) v1	cucwmB169
CsaV3_2G010370	Watermelon (97103) v2	cucwmbB114