WMU49241 (transcribed_cluster) Watermelon (97103) v1

BLAST of WMU49241 vs. TAIR10
Match: AT2G15430.1 (AT2G15430.1 DNA-directed RNA polymerase family protein)

HSP 1 Score: 73.9 bits (180), Expect = 5.5e-14
Identity = 37/43 (86.05%), Postives = 39/43 (90.70%), Query Frame = -2

Query: 2   RGIIIVKLRRGQELRLRAIAREGALVKDHAKWSPAATVTFMYE 61
           +GIIIVKLRRGQEL+LRAIAR+G + KDHAKWSPAATVTFMYE
Sbjct: 150 KGIIIVKLRRGQELKLRAIARKG-IGKDHAKWSPAATVTFMYE 191

Query: 62   121
           
Sbjct: 210  191

Query: 122  131
           
Sbjct: 270  191

BLAST of WMU49241 vs. TAIR10
Match: AT2G15400.1 (AT2G15400.1 DNA-directed RNA polymerase family protein)

HSP 1 Score: 69.3 bits (168), Expect = 1.4e-12
Identity = 33/43 (76.74%), Postives = 38/43 (88.37%), Query Frame = -2

Query: 2   RGIIIVKLRRGQELRLRAIAREGALVKDHAKWSPAATVTFMYE 61
           +GIII KLRRGQEL+L+A+AR+G + KDHAKWSPAATVT+MYE
Sbjct: 150 KGIIIAKLRRGQELKLKALARKG-IGKDHAKWSPAATVTYMYE 191

Query: 62   121
           
Sbjct: 210  191

Query: 122  131
           
Sbjct: 270  191

BLAST of WMU49241 vs. Swiss-Prot
Match: NRPB3_ARATH (DNA-directed RNA polymerases II, IV and V subunit 3 OS=Arabidopsis thaliana GN=NRPB3 PE=1 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 9.8e-13
Identity = 37/43 (86.05%), Postives = 39/43 (90.70%), Query Frame = -2

Query: 2   RGIIIVKLRRGQELRLRAIAREGALVKDHAKWSPAATVTFMYE 61
           +GIIIVKLRRGQEL+LRAIAR+G + KDHAKWSPAATVTFMYE
Sbjct: 150 KGIIIVKLRRGQELKLRAIARKG-IGKDHAKWSPAATVTFMYE 191

Query: 62   121
           
Sbjct: 210  191

Query: 122  131
           
Sbjct: 270  191

BLAST of WMU49241 vs. Swiss-Prot
Match: RPD3B_ARATH (DNA-directed RNA polymerases IV and V subunit 3B OS=Arabidopsis thaliana GN=NRPD3B PE=1 SV=2)

HSP 1 Score: 69.3 bits (168), Expect = 2.4e-11
Identity = 33/43 (76.74%), Postives = 38/43 (88.37%), Query Frame = -2

Query: 2   RGIIIVKLRRGQELRLRAIAREGALVKDHAKWSPAATVTFMYE 61
           +GIII KLRRGQEL+L+A+AR+G + KDHAKWSPAATVT+MYE
Sbjct: 150 KGIIIAKLRRGQELKLKALARKG-IGKDHAKWSPAATVTYMYE 191

Query: 62   121
           
Sbjct: 210  191

Query: 122  131
           
Sbjct: 270  191

BLAST of WMU49241 vs. Swiss-Prot
Match: RPB3_BOVIN (DNA-directed RNA polymerase II subunit RPB3 OS=Bos taurus GN=POLR2C PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.4e-06
Identity = 26/41 (63.41%), Postives = 31/41 (75.61%), Query Frame = -2

Query: 2   IIIVKLRRGQELRLRAIAREGALVKDHAKWSPAATVTFMYE 61
           I+IVKLR+GQELRLRA A++G   K+HAKW+P A V F Y+
Sbjct: 148 ILIVKLRKGQELRLRAYAKKG-FGKEHAKWNPTAGVAFEYD 187

Query: 62   121
           
Sbjct: 208  187

Query: 122  125
           
Sbjct: 268  187

BLAST of WMU49241 vs. Swiss-Prot
Match: RPB3_HUMAN (DNA-directed RNA polymerase II subunit RPB3 OS=Homo sapiens GN=POLR2C PE=1 SV=2)

HSP 1 Score: 53.5 bits (127), Expect = 1.4e-06
Identity = 26/41 (63.41%), Postives = 31/41 (75.61%), Query Frame = -2

Query: 2   IIIVKLRRGQELRLRAIAREGALVKDHAKWSPAATVTFMYE 61
           I+IVKLR+GQELRLRA A++G   K+HAKW+P A V F Y+
Sbjct: 148 ILIVKLRKGQELRLRAYAKKG-FGKEHAKWNPTAGVAFEYD 187

Query: 62   121
           
Sbjct: 208  187

Query: 122  125
           
Sbjct: 268  187

BLAST of WMU49241 vs. Swiss-Prot
Match: RPB3_YEAST (DNA-directed RNA polymerase II subunit RPB3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPB3 PE=1 SV=2)

HSP 1 Score: 53.1 bits (126), Expect = 1.8e-06
Identity = 22/42 (52.38%), Postives = 31/42 (73.81%), Query Frame = -2

Query: 2   GIIIVKLRRGQELRLRAIAREGALVKDHAKWSPAATVTFMYE 61
           G++I KLR+GQEL+L  +A++G + K+HAKW PAA + F Y+
Sbjct: 141 GVLICKLRKGQELKLTCVAKKG-IAKEHAKWGPAAAIEFEYD 181

Query: 62   121
           
Sbjct: 201  181

Query: 122  128
           
Sbjct: 261  181

BLAST of WMU49241 vs. NCBI nr
Match: gi|567860602|ref|XP_006422955.1| (hypothetical protein CICLE_v10028849mg [Citrus clementina])

HSP 1 Score: 78.6 bits (192), Expect = 6.3e-12
Identity = 40/46 (86.96%), Postives = 42/46 (91.30%), Query Frame = -2

Query: 2   DDCRGIIIVKLRRGQELRLRAIAREGALVKDHAKWSPAATVTFMYE 61
           D  RGIIIVKLRRGQELRLRAIAR+G + KDHAKWSPAATVTFMYE
Sbjct: 147 DQQRGIIIVKLRRGQELRLRAIARKG-IGKDHAKWSPAATVTFMYE 191

Query: 62   121
           
Sbjct: 207  191

Query: 122  140
           
Sbjct: 267  191

BLAST of WMU49241 vs. NCBI nr
Match: gi|357154558|ref|XP_003576823.1| (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3-like [Brachypodium distachyon])

HSP 1 Score: 78.6 bits (192), Expect = 6.3e-12
Identity = 39/45 (86.67%), Postives = 42/45 (93.33%), Query Frame = -2

Query: 2   DCRGIIIVKLRRGQELRLRAIAREGALVKDHAKWSPAATVTFMYE 61
           D RGI+IVKLRRGQELRLRAIAR+G + KDHAKWSPAATVTFMYE
Sbjct: 163 DHRGILIVKLRRGQELRLRAIARKG-IAKDHAKWSPAATVTFMYE 206

Query: 62   121
           
Sbjct: 223  206

Query: 122  137
           
Sbjct: 283  206

BLAST of WMU49241 vs. NCBI nr
Match: gi|357475219|ref|XP_003607895.1| (RPB3 DNA-directed RNA polymerase II subunit 3 [Medicago truncatula])

HSP 1 Score: 78.2 bits (191), Expect = 8.3e-12
Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = -2

Query: 2   DCRGIIIVKLRRGQELRLRAIAREGALVKDHAKWSPAATVTFMYE 61
           D RGIIIVKLRRGQELRLRAIAR+G + KDHAKWSPAATVTFMYE
Sbjct: 147 DGRGIIIVKLRRGQELRLRAIARKG-IGKDHAKWSPAATVTFMYE 190

Query: 62   121
           
Sbjct: 207  190

Query: 122  137
           
Sbjct: 267  190

BLAST of WMU49241 vs. NCBI nr
Match: gi|703142874|ref|XP_010107867.1| (DNA-directed RNA polymerase II subunit [Morus notabilis])

HSP 1 Score: 78.2 bits (191), Expect = 8.3e-12
Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = -2

Query: 2   DCRGIIIVKLRRGQELRLRAIAREGALVKDHAKWSPAATVTFMYE 61
           D RGIIIVKLRRGQELRLRAIAR+G + KDHAKWSPAATVTFMYE
Sbjct: 147 DQRGIIIVKLRRGQELRLRAIARKG-IGKDHAKWSPAATVTFMYE 190

Query: 62   121
           
Sbjct: 207  190

Query: 122  137
           
Sbjct: 267  190

BLAST of WMU49241 vs. NCBI nr
Match: gi|1012347744|gb|KYP58935.1| (DNA-directed RNA polymerase II subunit RPB3-A [Cajanus cajan])

HSP 1 Score: 78.2 bits (191), Expect = 8.3e-12
Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = -2

Query: 2   DCRGIIIVKLRRGQELRLRAIAREGALVKDHAKWSPAATVTFMYE 61
           D RGIIIVKLRRGQELRLRAIAR+G + KDHAKWSPAATVTFMYE
Sbjct: 147 DNRGIIIVKLRRGQELRLRAIARKG-IGKDHAKWSPAATVTFMYE 190

Query: 62   121
           
Sbjct: 207  190

Query: 122  137
           
Sbjct: 267  190