MU53014 (transcribed_cluster) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MU53014
Type	transcribed_cluster
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	DNA-directed RNA polymerase II subunit, putative
Location	chr5 : 13904967 .. 13913596 (+)
Sequence length	854

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

AGGAGAGAGGAAGAAGTCATGGAAGGGAGTTCGTACCAGCGATTTCCAAAGGTGAAAATCCGAGAACTCCGAGATGATTACGCCAAATTCGAGCTCCGGGACACCGATGCCAGCATGGCCAACGCTCTCCGTCGCGTCATGATTGCCGAGGTTCCCACCATTGCCATTGATTTGGTAGAAATTGAAGTGAACTCCTCTGTTCTCAACGACGAGTTCATTGCCCATCGCCTCGGTCTCATTCCCCTCACCAGCGAGCGTGCCATGTCCATGCGCTTCTCTCGCGACTGTGATGCTTGCGATGGTGATGGCCAGTGTGAGTTTTGCTCTGTCGAGTTTCACCTTCGCGCCAAGTGCCACTCCGACCAAACCCTAGACGTCACCAGTAAGGATCTCTATAGTTCTGATCACACTGTTGTCCCCGTTGATTTCTCCGACTCTGCTGCAGCTACTGGTGAAGCGCTGGATACCAAAGGAATAATCATTGTGAAGCTACGTCGCGGTCAAGAGTTGAGGCTTAGAGCCATAGCTAGGAAGGGCATTGGTAAAGATCACGCAAAATGGTCGCCTGCAGCAACTGTGACATTCATGTATGAGCCGAGCATTCACATCAATGAAGACCTAATGGAAACATTAACTCTAGAGGAAAAAAGAACTTGGGTTGAAAGTTGTCCGACCAGAGTATTTGAATTGGATCCGGTCACTCATCAGGTTATGGTGGTTGAACCTGAGGCATACACTTATGATGATGAGGTGATTAAAAAAGCAGAAGCTATGGGTAAAGCTGGATTAGTGGATATTACGGCGAGAGAAGATAGTTTTATCTTCACAGTCCAATCTACAGGTGCAATCAAAGC

Library


Library category	ESTs
melon DFLP2 library	1
melon VFLP2 library	1

Homology

[Close]

BLAST of MU53014 vs. Swiss-Prot
Match: NRPB3_ARATH (DNA-directed RNA polymerases II, IV and V subunit 3 OS=Arabidopsis thaliana GN=NRPB3 PE=1 SV=1)

HSP 1 Score: 444.9 bits (1143), Expect = 6.6e-124
Identity = 219/278 (78.78%), Postives = 253/278 (91.01%), Query Frame = 1


Query: 19  MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 78
           M+G++YQRFPK+KIREL+DDYAKFELR+TD SMANALRRVMI+EVPT+AIDLVEIEVNSS
Sbjct: 1   MDGATYQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSS 60

Query: 79  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 138
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEF L +KC +DQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDV 120

Query: 139 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 198
           TS+DLYS+D TV PVDF+  ++ + ++ + KGIIIVKLRRGQEL+LRAIARKGIGKDHAK
Sbjct: 121 TSRDLYSADPTVTPVDFTIDSSVS-DSSEHKGIIIVKLRRGQELKLRAIARKGIGKDHAK 180

Query: 199 WSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDPVTHQVMVVEPEAYT 258
           WSPAATVTFMYEP I INED+M+TL+ EEK   +ES PT+VF +DPVT QV+VV+PEAYT
Sbjct: 181 WSPAATVTFMYEPDIIINEDMMDTLSDEEKIDLIESSPTKVFGMDPVTRQVVVVDPEAYT 240

Query: 259 YDDEVIKKAEAMGKAGLVDITAREDSFIFTVQSTGAIK 318
           YD+EVIKKAEAMGK GL++I+ ++DSFIFTV+STGA+K
Sbjct: 241 YDEEVIKKAEAMGKPGLIEISPKDDSFIFTVESTGAVK 277

Query: 319  378
           
Sbjct: 301  277

Query: 379  438
           
Sbjct: 361  277

Query: 439  498
           
Sbjct: 421  277

Query: 499  558
           
Sbjct: 481  277

Query: 559  618
           
Sbjct: 541  277

Query: 619  678
           
Sbjct: 601  277

Query: 679  738
           
Sbjct: 661  277

Query: 739  798
           
Sbjct: 721  277

Query: 799  853
           
Sbjct: 781  277

[Close]

BLAST of MU53014 vs. Swiss-Prot
Match: RPD3B_ARATH (DNA-directed RNA polymerases IV and V subunit 3B OS=Arabidopsis thaliana GN=NRPD3B PE=1 SV=2)

HSP 1 Score: 412.1 bits (1058), Expect = 4.8e-114
Identity = 206/278 (74.10%), Postives = 241/278 (86.69%), Query Frame = 1


Query: 19  MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 78
           M+G +YQRFP VKIREL+DDYAKFELR+TD SMANALRRVMI+EVPT+AI LV+IEVNSS
Sbjct: 1   MDGVTYQRFPTVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSS 60

Query: 79  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 138
           VLNDEFIA RL LIPLTSERAMSMRF +DC+ C+GD  CEFCSVEF L AKC +DQTLDV
Sbjct: 61  VLNDEFIAQRLSLIPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKCVTDQTLDV 120

Query: 139 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 198
           TS+DLYS+D TV PVDF+ S ++T ++ + KGIII KLRRGQEL+L+A+ARKGIGKDHAK
Sbjct: 121 TSRDLYSADPTVTPVDFT-SNSSTSDSSEHKGIIIAKLRRGQELKLKALARKGIGKDHAK 180

Query: 199 WSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDPVTHQVMVVEPEAYT 258
           WSPAATVT+MYEP I INE++M TLT EEK   +ES PT+VF +DPVT QV+VV+PEAYT
Sbjct: 181 WSPAATVTYMYEPDIIINEEMMNTLTDEEKIDLIESSPTKVFGIDPVTGQVVVVDPEAYT 240

Query: 259 YDDEVIKKAEAMGKAGLVDITAREDSFIFTVQSTGAIK 318
           YD+EVIKKAEAMGK GL++I  + DSF+FTV+STGA+K
Sbjct: 241 YDEEVIKKAEAMGKPGLIEIHPKHDSFVFTVESTGALK 277

Query: 319  378
           
Sbjct: 301  277

Query: 379  438
           
Sbjct: 361  277

Query: 439  498
           
Sbjct: 421  277

Query: 499  558
           
Sbjct: 481  277

Query: 559  618
           
Sbjct: 541  277

Query: 619  678
           
Sbjct: 601  277

Query: 679  738
           
Sbjct: 661  277

Query: 739  798
           
Sbjct: 721  277

Query: 799  853
           
Sbjct: 781  277

[Close]

BLAST of MU53014 vs. Swiss-Prot
Match: RPB3_DICDI (DNA-directed RNA polymerase II subunit rpb3 OS=Dictyostelium discoideum GN=polr2c PE=3 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 2.2e-66
Identity = 137/277 (49.46%), Postives = 184/277 (66.43%), Query Frame = 1


Query: 28  SSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLN 87
           S   R P+++I E+++D   F L +TD S+ANALRRVMIAEVPT+ IDLVE E N+SVL 
Sbjct: 6   SQLTRQPELEILEIKNDSIIFILSNTDISVANALRRVMIAEVPTMCIDLVEFESNNSVLC 65

Query: 88  DEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSK 147
           DEFIAHRLGLIPL S+      ++RDC   D   +C+ CSVE  L  KC  ++  DVTS 
Sbjct: 66  DEFIAHRLGLIPLVSDNIDKFCYTRDCSCSD---RCDQCSVELRLNVKCTENRPRDVTSS 125

Query: 148 DLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSP 207
           DL S +  V+PV  S   ++  E    + I IVKLRRGQE++LRAIA+KG+GK+HAKWSP
Sbjct: 126 DLLSQNSAVIPVS-SQVTSSNSE----QEIPIVKLRRGQEIKLRAIAKKGVGKEHAKWSP 185

Query: 208 AATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDP--VTHQVMVVEPEAYTY 267
           +   T+ ++P I +N++ ++ LT ++K  WV SCPT+V+   P   T QV + +P    Y
Sbjct: 186 SCVATYQFQPIIVLNQNRIDELTDQQKEEWVGSCPTKVYSYSPHQSTQQVTIEDPLRCVY 245

Query: 268 DDEVIKKAEAMGKAGLVDITAREDSFIFTVQSTGAIK 327
             E  KKAE+ GK  LV +  ++D FIFTV+S+GA+K
Sbjct: 246 CLECKKKAESFGKPDLVHLEQKQDKFIFTVESSGALK 274

Query: 328  387
           
Sbjct: 306  274

Query: 388  447
           
Sbjct: 366  274

Query: 448  507
           
Sbjct: 426  274

Query: 508  567
           
Sbjct: 486  274

Query: 568  627
           
Sbjct: 546  274

Query: 628  687
           
Sbjct: 606  274

Query: 688  747
           
Sbjct: 666  274

Query: 748  807
           
Sbjct: 726  274

Query: 808  853
           
Sbjct: 786  274

[Close]

BLAST of MU53014 vs. Swiss-Prot
Match: RPB3_BOVIN (DNA-directed RNA polymerase II subunit RPB3 OS=Bos taurus GN=POLR2C PE=1 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 2.9e-47
Identity = 100/189 (52.91%), Postives = 130/189 (68.78%), Query Frame = 1


Query: 34  YQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 93
           Y   P V+I EL D+  KF + +TD ++AN++RRV IAEVP IAID V+I+ NSSVL+DE
Sbjct: 3   YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62

Query: 94  FIAHRLGLIPLTSERAMS-MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 153
           FIAHRLGLIPLTS+  +  +++SRDC     +  C  CSVEF L  +C+ DQT  VTS+D
Sbjct: 63  FIAHRLGLIPLTSDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 122

Query: 154 LYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 213
           L S+   V+PV   +      + ++   I+IVKLR+GQELRLRA A+KG GK+HAKW+P 
Sbjct: 123 LISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 182

Query: 214 ATVTFMYEP 273
           A V F Y+P
Sbjct: 183 AGVAFEYDP 188

Query: 274  333
           
Sbjct: 243  188

Query: 334  393
           
Sbjct: 303  188

Query: 394  453
           
Sbjct: 363  188

Query: 454  513
           
Sbjct: 423  188

Query: 514  573
           
Sbjct: 483  188

Query: 574  598
           
Sbjct: 543  188

[Close]

BLAST of MU53014 vs. Swiss-Prot
Match: RPB3_HUMAN (DNA-directed RNA polymerase II subunit RPB3 OS=Homo sapiens GN=POLR2C PE=1 SV=2)

HSP 1 Score: 188.0 bits (476), Expect = 1.5e-46
Identity = 99/189 (52.38%), Postives = 129/189 (68.25%), Query Frame = 1


Query: 34  YQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 93
           Y   P V+I EL D+  KF + +TD ++AN++RRV IAEVP IAID V+I+ NSSVL+DE
Sbjct: 3   YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62

Query: 94  FIAHRLGLIPLTSERAMS-MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 153
           FIAHRLGLIPL S+  +  +++SRDC     +  C  CSVEF L  +C+ DQT  VTS+D
Sbjct: 63  FIAHRLGLIPLISDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 122

Query: 154 LYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 213
           L S+   V+PV   +      + ++   I+IVKLR+GQELRLRA A+KG GK+HAKW+P 
Sbjct: 123 LISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 182

Query: 214 ATVTFMYEP 273
           A V F Y+P
Sbjct: 183 AGVAFEYDP 188

Query: 274  333
           
Sbjct: 243  188

Query: 334  393
           
Sbjct: 303  188

Query: 394  453
           
Sbjct: 363  188

Query: 454  513
           
Sbjct: 423  188

Query: 514  573
           
Sbjct: 483  188

Query: 574  598
           
Sbjct: 543  188

[Close]

BLAST of MU53014 vs. TrEMBL
Match: A0A0A0LHS1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G093850 PE=4 SV=1)

HSP 1 Score: 547.4 bits (1409), Expect = 1.1e-152
Identity = 275/278 (98.92%), Postives = 277/278 (99.64%), Query Frame = 1


Query: 19  MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 78
           MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 79  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 138
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120

Query: 139 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 198
           TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 199 WSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDPVTHQVMVVEPEAYT 258
           WSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELD VTHQVMVV+PEAYT
Sbjct: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDTVTHQVMVVDPEAYT 240

Query: 259 YDDEVIKKAEAMGKAGLVDITAREDSFIFTVQSTGAIK 318
           YDDEVIKKAEAMGKAGLVDITAREDSFIFTV+STGAIK
Sbjct: 241 YDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIK 278

Query: 319  378
           
Sbjct: 301  278

Query: 379  438
           
Sbjct: 361  278

Query: 439  498
           
Sbjct: 421  278

Query: 499  558
           
Sbjct: 481  278

Query: 559  618
           
Sbjct: 541  278

Query: 619  678
           
Sbjct: 601  278

Query: 679  738
           
Sbjct: 661  278

Query: 739  798
           
Sbjct: 721  278

Query: 799  853
           
Sbjct: 781  278

[Close]

BLAST of MU53014 vs. TrEMBL
Match: A0A061E7U0_THECC (DNA-directed RNA polymerase family protein OS=Theobroma cacao GN=TCM_007121 PE=4 SV=1)

HSP 1 Score: 487.6 bits (1254), Expect = 9.9e-135
Identity = 245/278 (88.13%), Postives = 264/278 (94.96%), Query Frame = 1


Query: 19  MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 78
           MEG SYQRFPKVKIREL+DDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGVSYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 79  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 138
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC +DQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDQTLDV 120

Query: 139 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 198
           TSKDLYSSDHTVVPVDF+DSA    ++ + +GIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 TSKDLYSSDHTVVPVDFTDSAGY--DSSEQRGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 199 WSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDPVTHQVMVVEPEAYT 258
           WSPAATVTFMYEP IHINED+METLTLEEK+++VES PTRVF++DP T QV+VV+PEAYT
Sbjct: 181 WSPAATVTFMYEPEIHINEDMMETLTLEEKQSFVESSPTRVFDIDPNTQQVVVVDPEAYT 240

Query: 259 YDDEVIKKAEAMGKAGLVDITAREDSFIFTVQSTGAIK 318
           YDDEV+KKAEAMGK GLV+I A+EDSFIFTV+STGAIK
Sbjct: 241 YDDEVLKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIK 276

Query: 319  378
           
Sbjct: 301  276

Query: 379  438
           
Sbjct: 361  276

Query: 439  498
           
Sbjct: 421  276

Query: 499  558
           
Sbjct: 481  276

Query: 559  618
           
Sbjct: 541  276

Query: 619  678
           
Sbjct: 601  276

Query: 679  738
           
Sbjct: 661  276

Query: 739  798
           
Sbjct: 721  276

Query: 799  853
           
Sbjct: 781  276

[Close]

BLAST of MU53014 vs. TrEMBL
Match: A0A0B0MXX2_GOSAR (DNA-directed RNA polymerase II subunit RPB3-A-like protein OS=Gossypium arboreum GN=F383_29872 PE=4 SV=1)

HSP 1 Score: 483.4 bits (1243), Expect = 1.9e-133
Identity = 243/278 (87.41%), Postives = 263/278 (94.60%), Query Frame = 1


Query: 19  MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 78
           MEG SYQRFPKVKIREL+DDYAKFELRDTDASMANALRRVMI+EVPTIAIDLVEIEVNSS
Sbjct: 1   MEGISYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMISEVPTIAIDLVEIEVNSS 60

Query: 79  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 138
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC SDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCISDQTLDV 120

Query: 139 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 198
           TSKDLYSSDHTVVPVDF+D+A    ++ + +GIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 TSKDLYSSDHTVVPVDFTDNAGY--DSTEPRGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 199 WSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDPVTHQVMVVEPEAYT 258
           WSPAATVTFMYEP IHINEDLME+LTLEEK ++VES PT+VF++DP T QV+VV+PEAYT
Sbjct: 181 WSPAATVTFMYEPEIHINEDLMESLTLEEKLSFVESSPTKVFDIDPNTQQVVVVDPEAYT 240

Query: 259 YDDEVIKKAEAMGKAGLVDITAREDSFIFTVQSTGAIK 318
           YDDEV+KKAEAMGK GLV+I A+EDSFIFTV+STGAIK
Sbjct: 241 YDDEVLKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIK 276

Query: 319  378
           
Sbjct: 301  276

Query: 379  438
           
Sbjct: 361  276

Query: 439  498
           
Sbjct: 421  276

Query: 499  558
           
Sbjct: 481  276

Query: 559  618
           
Sbjct: 541  276

Query: 619  678
           
Sbjct: 601  276

Query: 679  738
           
Sbjct: 661  276

Query: 739  798
           
Sbjct: 721  276

Query: 799  853
           
Sbjct: 781  276

[Close]

BLAST of MU53014 vs. TrEMBL
Match: A0A0D2SZ13_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G023500 PE=4 SV=1)

HSP 1 Score: 483.4 bits (1243), Expect = 1.9e-133
Identity = 243/278 (87.41%), Postives = 263/278 (94.60%), Query Frame = 1


Query: 19  MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 78
           MEG SYQRFPKVKIREL+DDYAKFELRDTDASMANALRRVMI+EVPTIAIDLVEIEVNSS
Sbjct: 1   MEGISYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMISEVPTIAIDLVEIEVNSS 60

Query: 79  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 138
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC SDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCISDQTLDV 120

Query: 139 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 198
           TSKDLYSSDHTVVPVDF+D+A    ++ + +GIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 TSKDLYSSDHTVVPVDFTDNAGY--DSTEPRGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 199 WSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDPVTHQVMVVEPEAYT 258
           WSPAATVTFMYEP IHINEDLME+LTLEEK ++VES PT+VF++DP T QV+VV+PEAYT
Sbjct: 181 WSPAATVTFMYEPEIHINEDLMESLTLEEKLSFVESSPTKVFDIDPNTQQVVVVDPEAYT 240

Query: 259 YDDEVIKKAEAMGKAGLVDITAREDSFIFTVQSTGAIK 318
           YDDEV+KKAEAMGK GLV+I A+EDSFIFTV+STGAIK
Sbjct: 241 YDDEVLKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIK 276

Query: 319  378
           
Sbjct: 301  276

Query: 379  438
           
Sbjct: 361  276

Query: 439  498
           
Sbjct: 421  276

Query: 499  558
           
Sbjct: 481  276

Query: 559  618
           
Sbjct: 541  276

Query: 619  678
           
Sbjct: 601  276

Query: 679  738
           
Sbjct: 661  276

Query: 739  798
           
Sbjct: 721  276

Query: 799  853
           
Sbjct: 781  276

[Close]

BLAST of MU53014 vs. TrEMBL
Match: A0A0D2V5K4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G149200 PE=4 SV=1)

HSP 1 Score: 483.4 bits (1243), Expect = 1.9e-133
Identity = 240/278 (86.33%), Postives = 264/278 (94.96%), Query Frame = 1


Query: 19  MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 78
           MEG+SYQRFP+VKIREL+DDYAKFEL DTDASMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGASYQRFPRVKIRELKDDYAKFELHDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 79  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 138
           VLNDEFIAHRLGLIPLTS+RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC SDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSQRAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCISDQTLDV 120

Query: 139 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 198
           TSKDLYSSDHTVVPVDF+DSA    E+ + +GIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 TSKDLYSSDHTVVPVDFTDSAGY--ESSEQRGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 199 WSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDPVTHQVMVVEPEAYT 258
           WSPAATVTFMYEP IHINED+M+TLTLEEK+++V+S PTRVF++DP T QV+VV+PEAYT
Sbjct: 181 WSPAATVTFMYEPEIHINEDMMDTLTLEEKQSFVDSSPTRVFDIDPNTQQVVVVDPEAYT 240

Query: 259 YDDEVIKKAEAMGKAGLVDITAREDSFIFTVQSTGAIK 318
           YDDEV+KKAEAMGK GLV+I A+EDSFIFT++STGA+K
Sbjct: 241 YDDEVLKKAEAMGKPGLVEIYAKEDSFIFTIESTGAVK 276

Query: 319  378
           
Sbjct: 301  276

Query: 379  438
           
Sbjct: 361  276

Query: 439  498
           
Sbjct: 421  276

Query: 499  558
           
Sbjct: 481  276

Query: 559  618
           
Sbjct: 541  276

Query: 619  678
           
Sbjct: 601  276

Query: 679  738
           
Sbjct: 661  276

Query: 739  798
           
Sbjct: 721  276

Query: 799  853
           
Sbjct: 781  276

[Close]

BLAST of MU53014 vs. TAIR10
Match: AT2G15430.1 (AT2G15430.1 DNA-directed RNA polymerase family protein)

HSP 1 Score: 444.9 bits (1143), Expect = 3.7e-125
Identity = 219/278 (78.78%), Postives = 253/278 (91.01%), Query Frame = 1


Query: 19  MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 78
           M+G++YQRFPK+KIREL+DDYAKFELR+TD SMANALRRVMI+EVPT+AIDLVEIEVNSS
Sbjct: 1   MDGATYQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSS 60

Query: 79  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 138
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEF L +KC +DQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDV 120

Query: 139 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 198
           TS+DLYS+D TV PVDF+  ++ + ++ + KGIIIVKLRRGQEL+LRAIARKGIGKDHAK
Sbjct: 121 TSRDLYSADPTVTPVDFTIDSSVS-DSSEHKGIIIVKLRRGQELKLRAIARKGIGKDHAK 180

Query: 199 WSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDPVTHQVMVVEPEAYT 258
           WSPAATVTFMYEP I INED+M+TL+ EEK   +ES PT+VF +DPVT QV+VV+PEAYT
Sbjct: 181 WSPAATVTFMYEPDIIINEDMMDTLSDEEKIDLIESSPTKVFGMDPVTRQVVVVDPEAYT 240

Query: 259 YDDEVIKKAEAMGKAGLVDITAREDSFIFTVQSTGAIK 318
           YD+EVIKKAEAMGK GL++I+ ++DSFIFTV+STGA+K
Sbjct: 241 YDEEVIKKAEAMGKPGLIEISPKDDSFIFTVESTGAVK 277

Query: 319  378
           
Sbjct: 301  277

Query: 379  438
           
Sbjct: 361  277

Query: 439  498
           
Sbjct: 421  277

Query: 499  558
           
Sbjct: 481  277

Query: 559  618
           
Sbjct: 541  277

Query: 619  678
           
Sbjct: 601  277

Query: 679  738
           
Sbjct: 661  277

Query: 739  798
           
Sbjct: 721  277

Query: 799  853
           
Sbjct: 781  277

[Close]

BLAST of MU53014 vs. TAIR10
Match: AT2G15400.1 (AT2G15400.1 DNA-directed RNA polymerase family protein)

HSP 1 Score: 412.1 bits (1058), Expect = 2.7e-115
Identity = 206/278 (74.10%), Postives = 241/278 (86.69%), Query Frame = 1


Query: 19  MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 78
           M+G +YQRFP VKIREL+DDYAKFELR+TD SMANALRRVMI+EVPT+AI LV+IEVNSS
Sbjct: 1   MDGVTYQRFPTVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSS 60

Query: 79  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 138
           VLNDEFIA RL LIPLTSERAMSMRF +DC+ C+GD  CEFCSVEF L AKC +DQTLDV
Sbjct: 61  VLNDEFIAQRLSLIPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKCVTDQTLDV 120

Query: 139 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 198
           TS+DLYS+D TV PVDF+ S ++T ++ + KGIII KLRRGQEL+L+A+ARKGIGKDHAK
Sbjct: 121 TSRDLYSADPTVTPVDFT-SNSSTSDSSEHKGIIIAKLRRGQELKLKALARKGIGKDHAK 180

Query: 199 WSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDPVTHQVMVVEPEAYT 258
           WSPAATVT+MYEP I INE++M TLT EEK   +ES PT+VF +DPVT QV+VV+PEAYT
Sbjct: 181 WSPAATVTYMYEPDIIINEEMMNTLTDEEKIDLIESSPTKVFGIDPVTGQVVVVDPEAYT 240

Query: 259 YDDEVIKKAEAMGKAGLVDITAREDSFIFTVQSTGAIK 318
           YD+EVIKKAEAMGK GL++I  + DSF+FTV+STGA+K
Sbjct: 241 YDEEVIKKAEAMGKPGLIEIHPKHDSFVFTVESTGALK 277

Query: 319  378
           
Sbjct: 301  277

Query: 379  438
           
Sbjct: 361  277

Query: 439  498
           
Sbjct: 421  277

Query: 499  558
           
Sbjct: 481  277

Query: 559  618
           
Sbjct: 541  277

Query: 619  678
           
Sbjct: 601  277

Query: 679  738
           
Sbjct: 661  277

Query: 739  798
           
Sbjct: 721  277

Query: 799  853
           
Sbjct: 781  277

[Close]

BLAST of MU53014 vs. TAIR10
Match: AT1G60850.2 (AT1G60850.2 DNA-directed RNA polymerase family protein)

HSP 1 Score: 124.4 bits (311), Expect = 1.1e-28
Identity = 95/305 (31.15%), Postives = 149/305 (48.85%), Query Frame = 1


Query: 7   EEEVMEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIE 66
           ++ V  G+ Y  F KV +  L     +F++   DA+ ANA RR++IAEVP++AI+ V I 
Sbjct: 62  DDNVKLGNFYDNF-KVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIA 121

Query: 67  VNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQ 126
            N+SV+ DE +AHR+GLIP+ ++  +    S      + D   E  ++ F L  KC  ++
Sbjct: 122 YNTSVIIDEVLAHRMGLIPIAADPRLFEYLS------EHDQANEKNTIVFKLHVKCPKNR 181

Query: 127 -TLDVTSKDL-----------YSSDHTVVP---VDFSDSAAATGEALDTK------GIII 186
             L V + DL            S + T  P     FS S  +  E  +         I+I
Sbjct: 182 PRLKVLTSDLKWLPNGSELLRESENKTSKPKTYTSFSCSQDSLPEFANNPITPCDLDILI 241

Query: 187 VKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVE 246
            KL  GQE+ L A A KGIGK HAKWSP  T  +   P + +  ++ + L        V 
Sbjct: 242 AKLAPGQEIELEAHAVKGIGKTHAKWSPVGTAWYRMHPEVVLRGEVEDELA----ERLVN 301

Query: 247 SCPTRVFELDPV---THQVMVVEPEAYTYDDEVIKKAEAMGKAGLVDITAREDSFIFTVQ 306
            CP  VF+++ +     +  V +P   T   E ++  + +     VD+ + ++ FIF ++
Sbjct: 302 VCPQNVFDIEDMGKGKKRATVAQPRKCTLCKECVRDDDLVDH---VDLGSVKNHFIFNIE 352

Query: 307 STGAI 366
           STG++
Sbjct: 362 STGSL 352

Query: 367  426
           
Sbjct: 422  352

Query: 427  486
           
Sbjct: 482  352

Query: 487  546
           
Sbjct: 542  352

Query: 547  606
           
Sbjct: 602  352

Query: 607  666
           
Sbjct: 662  352

Query: 667  726
           
Sbjct: 722  352

Query: 727  786
           
Sbjct: 782  352

Query: 787  846
           
Sbjct: 842  352

Query: 847  850
           
Sbjct: 902  352

[Close]

BLAST of MU53014 vs. TAIR10
Match: AT1G60620.1 (AT1G60620.1 RNA polymerase I subunit 43)

HSP 1 Score: 115.2 bits (287), Expect = 6.8e-26
Identity = 89/290 (30.69%), Postives = 139/290 (47.93%), Query Frame = 1


Query: 49  KVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 108
           KV +  L +    F++    A +ANA RR+++AE+P++AI+ V +  N+SV+ DE +AHR
Sbjct: 82  KVDVISLTETDMVFDMIGVHAGIANAFRRILLAELPSMAIEKVYVANNTSVIQDEVLAHR 141

Query: 109 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC-HSDQTLDVTSKDL---- 168
           LGLIP+ ++  +    S      + D   E  ++ F L  KC   D    V + +L    
Sbjct: 142 LGLIPIAADPRLFEYLS------ENDQPNEKNTIVFKLHVKCLKGDPRRKVLTSELKWLP 201

Query: 169 -------YSSDHTVVP---VDFSDSAAATGEALDT------KGIIIVKLRRGQELRLRAI 228
                   S   T  P     F+ S  +  E  +       K I+I KL  GQE+ L A 
Sbjct: 202 NGSELIKESGGSTTTPKTYTSFNHSQDSFPEFAENPIRPTLKDILIAKLGPGQEIELEAH 261

Query: 229 ARKGIGKDHAKWSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDPV-- 288
           A KGIGK HAKWSP AT  +   P +     L++    +     V+ CP +VF+++ +  
Sbjct: 262 AVKGIGKTHAKWSPVATAWYRMLPEV----VLLKEFEGKHAEELVKVCPKKVFDIEDMGQ 321

Query: 289 -THQVMVVEPEAYTYDDEVIKKAEAMGKAGLVDITAREDSFIFTVQSTGA 348
              +  V  P   +   E I+  + +     VD+   ++ FIFT++STG+
Sbjct: 322 GRKRATVARPRDCSLCRECIR--DGVEWEDQVDLRRVKNHFIFTIESTGS 359

Query: 349  408
           
Sbjct: 382  359

Query: 409  468
           
Sbjct: 442  359

Query: 469  528
           
Sbjct: 502  359

Query: 529  588
           
Sbjct: 562  359

Query: 589  648
           
Sbjct: 622  359

Query: 649  708
           
Sbjct: 682  359

Query: 709  768
           
Sbjct: 742  359

Query: 769  828
           
Sbjct: 802  359

Query: 829  847
           
Sbjct: 862  359

[Close]

BLAST of MU53014 vs. NCBI nr
Match: gi|659082285|ref|XP_008441761.1| (PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerases II, IV and V subunit 3-like [Cucumis melo])

HSP 1 Score: 545.4 bits (1404), Expect = 5.8e-152
Identity = 276/278 (99.28%), Postives = 277/278 (99.64%), Query Frame = 1


Query: 19  MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 78
           MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 79  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 138
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120

Query: 139 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 198
           TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 199 WSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDPVTHQVMVVEPEAYT 258
           WSPAATVTFMYEPSIHINEDLMETLTLEEK TWVESCPTRVFELDPVTHQVMVVEPEAYT
Sbjct: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKXTWVESCPTRVFELDPVTHQVMVVEPEAYT 240

Query: 259 YDDEVIKKAEAMGKAGLVDITAREDSFIFTVQSTGAIK 318
           YDDEVIKKAEAMGKAGLVDITAREDSFIFTV+STGAIK
Sbjct: 241 YDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIK 278

Query: 319  378
           
Sbjct: 301  278

Query: 379  438
           
Sbjct: 361  278

Query: 439  498
           
Sbjct: 421  278

Query: 499  558
           
Sbjct: 481  278

Query: 559  618
           
Sbjct: 541  278

Query: 619  678
           
Sbjct: 601  278

Query: 679  738
           
Sbjct: 661  278

Query: 739  798
           
Sbjct: 721  278

Query: 799  853
           
Sbjct: 781  278

[Close]

BLAST of MU53014 vs. NCBI nr
Match: gi|449442251|ref|XP_004138895.1| (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3 [Cucumis sativus])

HSP 1 Score: 543.5 bits (1399), Expect = 2.2e-151
Identity = 275/278 (98.92%), Postives = 277/278 (99.64%), Query Frame = 1


Query: 19  MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 78
           MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 79  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 138
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120

Query: 139 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 198
           TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 199 WSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDPVTHQVMVVEPEAYT 258
           WSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELD VTHQVMVV+PEAYT
Sbjct: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDTVTHQVMVVDPEAYT 240

Query: 259 YDDEVIKKAEAMGKAGLVDITAREDSFIFTVQSTGAIK 318
           YDDEVIKKAEAMGKAGLVDITAREDSFIFTV+STGAIK
Sbjct: 241 YDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIK 278

Query: 319  378
           
Sbjct: 301  278

Query: 379  438
           
Sbjct: 361  278

Query: 439  498
           
Sbjct: 421  278

Query: 499  558
           
Sbjct: 481  278

Query: 559  618
           
Sbjct: 541  278

Query: 619  678
           
Sbjct: 601  278

Query: 679  738
           
Sbjct: 661  278

Query: 739  798
           
Sbjct: 721  278

Query: 799  853
           
Sbjct: 781  278

[Close]

BLAST of MU53014 vs. NCBI nr
Match: gi|1009149980|ref|XP_015892771.1| (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3 [Ziziphus jujuba])

HSP 1 Score: 487.6 bits (1254), Expect = 1.4e-134
Identity = 243/278 (87.41%), Postives = 263/278 (94.60%), Query Frame = 1


Query: 19  MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 78
           MEG SYQRFPKVKIRE++DDY KFELR+TDASMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGKSYQRFPKVKIREMKDDYLKFELRETDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 79  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 138
           VLNDEFIAHRLGL+PLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV
Sbjct: 61  VLNDEFIAHRLGLVPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120

Query: 139 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 198
           TSKDLYSSDHTVVPVDFSDSA    ++ + +GIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 TSKDLYSSDHTVVPVDFSDSAGY--DSSENRGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 199 WSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDPVTHQVMVVEPEAYT 258
           WSPAATVTFMYEP I INE+LM+TLT EEKR WV+S PT+VF++DP THQV+VV+PEAYT
Sbjct: 181 WSPAATVTFMYEPDIRINEELMDTLTFEEKRNWVDSSPTKVFDIDPNTHQVVVVDPEAYT 240

Query: 259 YDDEVIKKAEAMGKAGLVDITAREDSFIFTVQSTGAIK 318
           YD+EVIKKA+AMGK GLVDITA+EDSFIFTV+STGAIK
Sbjct: 241 YDEEVIKKADAMGKHGLVDITAKEDSFIFTVESTGAIK 276

Query: 319  378
           
Sbjct: 301  276

Query: 379  438
           
Sbjct: 361  276

Query: 439  498
           
Sbjct: 421  276

Query: 499  558
           
Sbjct: 481  276

Query: 559  618
           
Sbjct: 541  276

Query: 619  678
           
Sbjct: 601  276

Query: 679  738
           
Sbjct: 661  276

Query: 739  798
           
Sbjct: 721  276

Query: 799  853
           
Sbjct: 781  276

[Close]

BLAST of MU53014 vs. NCBI nr
Match: gi|590686859|ref|XP_007042502.1| (DNA-directed RNA polymerase family protein [Theobroma cacao])

HSP 1 Score: 483.8 bits (1244), Expect = 2.1e-133
Identity = 245/278 (88.13%), Postives = 264/278 (94.96%), Query Frame = 1


Query: 19  MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 78
           MEG SYQRFPKVKIREL+DDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGVSYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 79  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 138
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC +DQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDQTLDV 120

Query: 139 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 198
           TSKDLYSSDHTVVPVDF+DSA    ++ + +GIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 TSKDLYSSDHTVVPVDFTDSAGY--DSSEQRGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 199 WSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDPVTHQVMVVEPEAYT 258
           WSPAATVTFMYEP IHINED+METLTLEEK+++VES PTRVF++DP T QV+VV+PEAYT
Sbjct: 181 WSPAATVTFMYEPEIHINEDMMETLTLEEKQSFVESSPTRVFDIDPNTQQVVVVDPEAYT 240

Query: 259 YDDEVIKKAEAMGKAGLVDITAREDSFIFTVQSTGAIK 318
           YDDEV+KKAEAMGK GLV+I A+EDSFIFTV+STGAIK
Sbjct: 241 YDDEVLKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIK 276

Query: 319  378
           
Sbjct: 301  276

Query: 379  438
           
Sbjct: 361  276

Query: 439  498
           
Sbjct: 421  276

Query: 499  558
           
Sbjct: 481  276

Query: 559  618
           
Sbjct: 541  276

Query: 619  678
           
Sbjct: 601  276

Query: 679  738
           
Sbjct: 661  276

Query: 739  798
           
Sbjct: 721  276

Query: 799  853
           
Sbjct: 781  276

[Close]

BLAST of MU53014 vs. NCBI nr
Match: gi|657962991|ref|XP_008373098.1| (PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerases II, IV and V subunit 3-like [Malus domestica])

HSP 1 Score: 482.6 bits (1241), Expect = 4.6e-133
Identity = 241/278 (86.69%), Postives = 262/278 (94.24%), Query Frame = 1


Query: 19  MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 78
           MEG SYQR P+VKIRE+RDDY KFELRDTDAS+ANALRRVMIAEVPT+AIDLVEIE+NSS
Sbjct: 1   MEGKSYQRLPRVKIREMRDDYVKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSS 60

Query: 79  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 138
           VLNDEFIAHRLGLIPLTS+RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120

Query: 139 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 198
           TSKDL SSDHTVVPVDFSDSA    E+ + KGIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 TSKDLLSSDHTVVPVDFSDSAGL--ESSEQKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 199 WSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDPVTHQVMVVEPEAYT 258
           WSPAATVTFMYEP I INE+LM+TLTLEEK+ WV+S PT+VF++DP T +V+VV+PEAYT
Sbjct: 181 WSPAATVTFMYEPDIRINEELMDTLTLEEKKAWVDSSPTKVFDIDPKTDKVVVVDPEAYT 240

Query: 259 YDDEVIKKAEAMGKAGLVDITAREDSFIFTVQSTGAIK 318
           YDDEVIKKAEAMGK+GLVDI+AREDSFIFTV+STGAIK
Sbjct: 241 YDDEVIKKAEAMGKSGLVDISAREDSFIFTVESTGAIK 276

Query: 319  378
           
Sbjct: 301  276

Query: 379  438
           
Sbjct: 361  276

Query: 439  498
           
Sbjct: 421  276

Query: 499  558
           
Sbjct: 481  276

Query: 559  618
           
Sbjct: 541  276

Query: 619  678
           
Sbjct: 601  276

Query: 679  738
           
Sbjct: 661  276

Query: 739  798
           
Sbjct: 721  276

Query: 799  853
           
Sbjct: 781  276

The following BLAST results are available for this feature:

BLAST of MU53014 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NRPB3_ARATH	6.6e-124	78.78	DNA-directed RNA polymerases II, IV and V subunit 3 OS=Arabidopsis thaliana GN=N...	[more]
RPD3B_ARATH	4.8e-114	74.10	DNA-directed RNA polymerases IV and V subunit 3B OS=Arabidopsis thaliana GN=NRPD...	[more]
RPB3_DICDI	2.2e-66	49.46	DNA-directed RNA polymerase II subunit rpb3 OS=Dictyostelium discoideum GN=polr2...	[more]
RPB3_BOVIN	2.9e-47	52.91	DNA-directed RNA polymerase II subunit RPB3 OS=Bos taurus GN=POLR2C PE=1 SV=1	[more]
RPB3_HUMAN	1.5e-46	52.38	DNA-directed RNA polymerase II subunit RPB3 OS=Homo sapiens GN=POLR2C PE=1 SV=2	[more]

BLAST of MU53014 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LHS1_CUCSA	1.1e-152	98.92	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G093850 PE=4 SV=1	[more]
A0A061E7U0_THECC	9.9e-135	88.13	DNA-directed RNA polymerase family protein OS=Theobroma cacao GN=TCM_007121 PE=4...	[more]
A0A0B0MXX2_GOSAR	1.9e-133	87.41	DNA-directed RNA polymerase II subunit RPB3-A-like protein OS=Gossypium arboreum...	[more]
A0A0D2SZ13_GOSRA	1.9e-133	87.41	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G023500 PE=4 SV=1	[more]
A0A0D2V5K4_GOSRA	1.9e-133	86.33	Uncharacterized protein OS=Gossypium raimondii GN=B456_012G149200 PE=4 SV=1	[more]

BLAST of MU53014 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G15430.1	3.7e-125	78.78	DNA-directed RNA polymerase family protein	[more]
AT2G15400.1	2.7e-115	74.10	DNA-directed RNA polymerase family protein	[more]
AT1G60850.2	1.1e-28	31.15	DNA-directed RNA polymerase family protein	[more]
AT1G60620.1	6.8e-26	30.69	RNA polymerase I subunit 43	[more]

BLAST of MU53014 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659082285\|ref\|XP_008441761.1\|	5.8e-152	99.28	PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerases II, IV and V subuni...	[more]
gi\|449442251\|ref\|XP_004138895.1\|	2.2e-151	98.92	PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3 [Cucumis sativus]	[more]
gi\|1009149980\|ref\|XP_015892771.1\|	1.4e-134	87.41	PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3 [Ziziphus jujuba]	[more]
gi\|590686859\|ref\|XP_007042502.1\|	2.1e-133	88.13	DNA-directed RNA polymerase family protein [Theobroma cacao]	[more]
gi\|657962991\|ref\|XP_008373098.1\|	4.6e-133	86.69	PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerases II, IV and V subuni...	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR001514	DNA-dir_RNA_pol_30-40kDasu_CS
IPR009025	RBP11-like_dimer
IPR011262	DNA-dir_RNA_pol_insert
IPR011263	DNA-dir_RNA_pol_RpoA/D/Rpb3

Vocabulary: **Biological Process**
Term	Definition
GO:0006351	transcription, DNA-templated

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0003899	DNA-directed RNA polymerase activity
GO:0046983	protein dimerization activity

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed RNA polymerase activity
molecular_function	GO:0046983	protein dimerization activity

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C008589	MELO3C008589	gene
MELO3C008590	MELO3C008590	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
EA3YF24FM1	EA3YF24FM1	EST
GA20YL05FM1	GA20YL05FM1	EST

InterPro

Analysis Name: InterPro Annotations of melon unigene v4
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001514	DNA-directed RNA polymerase, 30-40kDa subunit, conserved site	PROSITE	PS00446	RNA_POL_D_30KD	coord: 41..81 scor
IPR009025	DNA-directed RNA polymerase, RBP11-like dimerisation domain	PFAM	PF01193	RNA_pol_L	coord: 29..285 score: 3.1
IPR009025	DNA-directed RNA polymerase, RBP11-like dimerisation domain	unknown	SSF55257	RBP11-like subunits of RNA polymerase	coord: 220..284 score: 1.28E-26coord: 16..57 score: 1.28
IPR011262	DNA-directed RNA polymerase, insert domain	GENE3D	G3DSA:2.170.120.12		coord: 53..185 score: 2.3
IPR011262	DNA-directed RNA polymerase, insert domain	PFAM	PF01000	RNA_pol_A_bac	coord: 59..188 score: 2.4
IPR011262	DNA-directed RNA polymerase, insert domain	unknown	SSF56553	Insert subdomain of RNA polymerase alpha subunit	coord: 52..189 score: 1.92
IPR011263	DNA-directed RNA polymerase, RpoA/D/Rpb3-type	SMART	SM00662	rpoldneu2	coord: 27..285 score: 5.7
None	No IPR available	GENE3D	G3DSA:3.30.1360.10		coord: 12..52 score: 2.0E-35coord: 186..284 score: 2.0
None	No IPR available	PANTHER	PTHR11800	DNA-DIRECTED RNA POLYMERASE	coord: 11..285 score: 2.4E
None	No IPR available	PANTHER	PTHR11800:SF2	DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3	coord: 11..285 score: 2.4E