MELO3C008590 (gene) Melon (DHL92) v3.5.1

NameMELO3C008590
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionDNA-directed RNA polymerase II subunit, putative
Locationchr5 : 13913453 .. 13913722 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGTTGAACCTGAGGCATACACTTATGATGATGAGGTGATTAAAAAAGCAGAAGCTATGGGTAAAGCTGGATTAGTGGATATTACGGCGAGAGAAGATAGTTTTATCTTCACAGTCGAATCTACAGGTGCAATCAAAGCTTCCCAGTTGATACTCAATGCCATAGATATCCTGAAACAGAAGCTGGATGCCGTCCGTCTTTCAGATGATACCGTAGAAGCAGATGATCAGTTTGGTGAGTTAGGTGCACATATGCGAGGTGGATGA

mRNA sequence

ATGGTGGTTGAACCTGAGGCATACACTTATGATGATGAGGTGATTAAAAAAGCAGAAGCTATGGGTAAAGCTGGATTAGTGGATATTACGGCGAGAGAAGATAGTTTTATCTTCACAGTCGAATCTACAGGTGCAATCAAAGCTTCCCAGTTGATACTCAATGCCATAGATATCCTGAAACAGAAGCTGGATGCCGTCCGTCTTTCAGATGATACCGTAGAAGCAGATGATCAGTTTGGTGAGTTAGGTGCACATATGCGAGGTGGATGA

Coding sequence (CDS)

ATGGTGGTTGAACCTGAGGCATACACTTATGATGATGAGGTGATTAAAAAAGCAGAAGCTATGGGTAAAGCTGGATTAGTGGATATTACGGCGAGAGAAGATAGTTTTATCTTCACAGTCGAATCTACAGGTGCAATCAAAGCTTCCCAGTTGATACTCAATGCCATAGATATCCTGAAACAGAAGCTGGATGCCGTCCGTCTTTCAGATGATACCGTAGAAGCAGATGATCAGTTTGGTGAGTTAGGTGCACATATGCGAGGTGGATGA

Protein sequence

MVVEPEAYTYDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLSDDTVEADDQFGELGAHMRGG*
BLAST of MELO3C008590 vs. Swiss-Prot
Match: NRPB3_ARATH (DNA-directed RNA polymerases II, IV and V subunit 3 OS=Arabidopsis thaliana GN=NRPB3 PE=1 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 3.9e-38
Identity = 76/89 (85.39%), Postives = 85/89 (95.51%), Query Frame = 1

Query: 1   MVVEPEAYTYDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILK 60
           +VV+PEAYTYD+EVIKKAEAMGK GL++I+ ++DSFIFTVESTGA+KASQL+LNAID+LK
Sbjct: 231 VVVDPEAYTYDEEVIKKAEAMGKPGLIEISPKDDSFIFTVESTGAVKASQLVLNAIDLLK 290

Query: 61  QKLDAVRLSDDTVEADDQFGELGAHMRGG 90
           QKLDAVRLSDDTVEADDQFGELGAHMRGG
Sbjct: 291 QKLDAVRLSDDTVEADDQFGELGAHMRGG 319

BLAST of MELO3C008590 vs. Swiss-Prot
Match: RPD3B_ARATH (DNA-directed RNA polymerases IV and V subunit 3B OS=Arabidopsis thaliana GN=NRPD3B PE=1 SV=2)

HSP 1 Score: 151.0 bits (380), Expect = 6.3e-36
Identity = 73/89 (82.02%), Postives = 82/89 (92.13%), Query Frame = 1

Query: 1   MVVEPEAYTYDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILK 60
           +VV+PEAYTYD+EVIKKAEAMGK GL++I  + DSF+FTVESTGA+KASQL+LNAIDILK
Sbjct: 231 VVVDPEAYTYDEEVIKKAEAMGKPGLIEIHPKHDSFVFTVESTGALKASQLVLNAIDILK 290

Query: 61  QKLDAVRLSDDTVEADDQFGELGAHMRGG 90
           QKLDA+RLSD+TVEADDQFGELGAHMR G
Sbjct: 291 QKLDAIRLSDNTVEADDQFGELGAHMREG 319

BLAST of MELO3C008590 vs. Swiss-Prot
Match: RPB3_DICDI (DNA-directed RNA polymerase II subunit rpb3 OS=Dictyostelium discoideum GN=polr2c PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 5.5e-08
Identity = 29/66 (43.94%), Postives = 41/66 (62.12%), Query Frame = 1

Query: 2   VVEPEAYTYDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQ 61
           + +P    Y  E  KKAE+ GK  LV +  ++D FIFTVES+GA+K   ++L AI I+K+
Sbjct: 229 IEDPLRCVYCLECKKKAESFGKPDLVHLEQKQDKFIFTVESSGALKPEDIVLYAIQIIKR 288

Query: 62  KLDAVR 68
           KL  ++
Sbjct: 289 KLTDIQ 294

BLAST of MELO3C008590 vs. TrEMBL
Match: A0A0A0LHS1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G093850 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 2.2e-40
Identity = 88/89 (98.88%), Postives = 89/89 (100.00%), Query Frame = 1

Query: 1   MVVEPEAYTYDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILK 60
           MVV+PEAYTYDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILK
Sbjct: 232 MVVDPEAYTYDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILK 291

Query: 61  QKLDAVRLSDDTVEADDQFGELGAHMRGG 90
           QKLDAVRLSDDTVEADDQFGELGAHMRGG
Sbjct: 292 QKLDAVRLSDDTVEADDQFGELGAHMRGG 320

BLAST of MELO3C008590 vs. TrEMBL
Match: M5W886_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008812mg PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 1.8e-37
Identity = 81/89 (91.01%), Postives = 87/89 (97.75%), Query Frame = 1

Query: 1   MVVEPEAYTYDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILK 60
           MVV+PEAYTYDDEVIKKAEAMGK GLVDI A+EDSFIFTVESTGA+KASQL+LNAI+ILK
Sbjct: 230 MVVDPEAYTYDDEVIKKAEAMGKPGLVDIIAKEDSFIFTVESTGAVKASQLLLNAIEILK 289

Query: 61  QKLDAVRLSDDTVEADDQFGELGAHMRGG 90
           QKLDAVRLS+DTVEADDQFGELGAHMRGG
Sbjct: 290 QKLDAVRLSEDTVEADDQFGELGAHMRGG 318

BLAST of MELO3C008590 vs. TrEMBL
Match: B9HS44_POPTR (DNA-directed RNA polymerase II 36 kDa polypeptide B family protein OS=Populus trichocarpa GN=POPTR_0009s10050g PE=4 SV=2)

HSP 1 Score: 161.4 bits (407), Expect = 5.2e-37
Identity = 79/89 (88.76%), Postives = 86/89 (96.63%), Query Frame = 1

Query: 1   MVVEPEAYTYDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILK 60
           +VV+PEAYTYDDEVIKKAEAMGK GL+DI A+EDSFIFTVESTGA+KASQL+LNAI+ILK
Sbjct: 235 VVVDPEAYTYDDEVIKKAEAMGKRGLIDIRAKEDSFIFTVESTGAVKASQLVLNAIEILK 294

Query: 61  QKLDAVRLSDDTVEADDQFGELGAHMRGG 90
           QKLDAVRLSDDTVEADDQFGELG HMRGG
Sbjct: 295 QKLDAVRLSDDTVEADDQFGELGVHMRGG 323

BLAST of MELO3C008590 vs. TrEMBL
Match: A0A059BBW8_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G01370 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 1.2e-36
Identity = 79/89 (88.76%), Postives = 87/89 (97.75%), Query Frame = 1

Query: 1   MVVEPEAYTYDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILK 60
           +VV+PEAYTYD+EVIKKAEAMGK GLV+I A+EDSFIFTVESTGAIKASQL+LNAID+LK
Sbjct: 233 LVVDPEAYTYDEEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIDVLK 292

Query: 61  QKLDAVRLSDDTVEADDQFGELGAHMRGG 90
           QKLDAVRLS+DTVEADDQFGELGAHMRGG
Sbjct: 293 QKLDAVRLSEDTVEADDQFGELGAHMRGG 321

BLAST of MELO3C008590 vs. TrEMBL
Match: A0A059WJH0_QUESU (RNA polymerase II OS=Quercus suber PE=2 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 1.5e-36
Identity = 79/89 (88.76%), Postives = 87/89 (97.75%), Query Frame = 1

Query: 1   MVVEPEAYTYDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILK 60
           +VVEPE YTYDDEVIKKA+AMGK+GLV+I A+EDSFIFTVESTGAIKASQL+LNAI+ILK
Sbjct: 229 VVVEPELYTYDDEVIKKADAMGKSGLVEIEAKEDSFIFTVESTGAIKASQLVLNAIEILK 288

Query: 61  QKLDAVRLSDDTVEADDQFGELGAHMRGG 90
           QKLDAVRLSDDTVEADDQFGELGAH+RGG
Sbjct: 289 QKLDAVRLSDDTVEADDQFGELGAHLRGG 317

BLAST of MELO3C008590 vs. TAIR10
Match: AT2G15430.1 (AT2G15430.1 DNA-directed RNA polymerase family protein)

HSP 1 Score: 158.3 bits (399), Expect = 2.2e-39
Identity = 76/89 (85.39%), Postives = 85/89 (95.51%), Query Frame = 1

Query: 1   MVVEPEAYTYDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILK 60
           +VV+PEAYTYD+EVIKKAEAMGK GL++I+ ++DSFIFTVESTGA+KASQL+LNAID+LK
Sbjct: 231 VVVDPEAYTYDEEVIKKAEAMGKPGLIEISPKDDSFIFTVESTGAVKASQLVLNAIDLLK 290

Query: 61  QKLDAVRLSDDTVEADDQFGELGAHMRGG 90
           QKLDAVRLSDDTVEADDQFGELGAHMRGG
Sbjct: 291 QKLDAVRLSDDTVEADDQFGELGAHMRGG 319

BLAST of MELO3C008590 vs. TAIR10
Match: AT2G15400.1 (AT2G15400.1 DNA-directed RNA polymerase family protein)

HSP 1 Score: 151.0 bits (380), Expect = 3.5e-37
Identity = 73/89 (82.02%), Postives = 82/89 (92.13%), Query Frame = 1

Query: 1   MVVEPEAYTYDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILK 60
           +VV+PEAYTYD+EVIKKAEAMGK GL++I  + DSF+FTVESTGA+KASQL+LNAIDILK
Sbjct: 231 VVVDPEAYTYDEEVIKKAEAMGKPGLIEIHPKHDSFVFTVESTGALKASQLVLNAIDILK 290

Query: 61  QKLDAVRLSDDTVEADDQFGELGAHMRGG 90
           QKLDA+RLSD+TVEADDQFGELGAHMR G
Sbjct: 291 QKLDAIRLSDNTVEADDQFGELGAHMREG 319

BLAST of MELO3C008590 vs. NCBI nr
Match: gi|659082285|ref|XP_008441761.1| (PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerases II, IV and V subunit 3-like [Cucumis melo])

HSP 1 Score: 173.7 bits (439), Expect = 1.4e-40
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1

Query: 1   MVVEPEAYTYDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILK 60
           MVVEPEAYTYDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILK
Sbjct: 232 MVVEPEAYTYDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILK 291

Query: 61  QKLDAVRLSDDTVEADDQFGELGAHMRGG 90
           QKLDAVRLSDDTVEADDQFGELGAHMRGG
Sbjct: 292 QKLDAVRLSDDTVEADDQFGELGAHMRGG 320

BLAST of MELO3C008590 vs. NCBI nr
Match: gi|449442251|ref|XP_004138895.1| (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3 [Cucumis sativus])

HSP 1 Score: 172.6 bits (436), Expect = 3.2e-40
Identity = 88/89 (98.88%), Postives = 89/89 (100.00%), Query Frame = 1

Query: 1   MVVEPEAYTYDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILK 60
           MVV+PEAYTYDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILK
Sbjct: 232 MVVDPEAYTYDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILK 291

Query: 61  QKLDAVRLSDDTVEADDQFGELGAHMRGG 90
           QKLDAVRLSDDTVEADDQFGELGAHMRGG
Sbjct: 292 QKLDAVRLSDDTVEADDQFGELGAHMRGG 320

BLAST of MELO3C008590 vs. NCBI nr
Match: gi|658063503|ref|XP_008367672.1| (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3-like [Malus domestica])

HSP 1 Score: 164.5 bits (415), Expect = 8.8e-38
Identity = 81/89 (91.01%), Postives = 89/89 (100.00%), Query Frame = 1

Query: 1   MVVEPEAYTYDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILK 60
           +VV+PEAYTYDDEVIKKAEAMGK+GLVDITAREDSFIFTVESTGAIKA+QL+LNAI++LK
Sbjct: 230 VVVDPEAYTYDDEVIKKAEAMGKSGLVDITAREDSFIFTVESTGAIKAAQLLLNAIEVLK 289

Query: 61  QKLDAVRLSDDTVEADDQFGELGAHMRGG 90
           QKLDAVRLS+DTVEADDQFGELGAHMRGG
Sbjct: 290 QKLDAVRLSEDTVEADDQFGELGAHMRGG 318

BLAST of MELO3C008590 vs. NCBI nr
Match: gi|470136511|ref|XP_004304034.1| (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3 [Fragaria vesca subsp. vesca])

HSP 1 Score: 164.1 bits (414), Expect = 1.1e-37
Identity = 82/89 (92.13%), Postives = 88/89 (98.88%), Query Frame = 1

Query: 1   MVVEPEAYTYDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILK 60
           +VV+PEAYTYDDEVIKKAEAMGK GLVDITA+EDSFIFTVESTGAIKASQL+LNAI+ILK
Sbjct: 230 VVVDPEAYTYDDEVIKKAEAMGKPGLVDITAKEDSFIFTVESTGAIKASQLLLNAIEILK 289

Query: 61  QKLDAVRLSDDTVEADDQFGELGAHMRGG 90
           QKLDAVRLS+DTVEADDQFGELGAHMRGG
Sbjct: 290 QKLDAVRLSEDTVEADDQFGELGAHMRGG 318

BLAST of MELO3C008590 vs. NCBI nr
Match: gi|694413499|ref|XP_009335010.1| (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3-like [Pyrus x bretschneideri])

HSP 1 Score: 162.9 bits (411), Expect = 2.6e-37
Identity = 80/89 (89.89%), Postives = 89/89 (100.00%), Query Frame = 1

Query: 1   MVVEPEAYTYDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILK 60
           +VV+PEAYTYDDEVIKKAEAMGK+GLVDI+AREDSFIFTVESTGAIKA+QL+LNAI++LK
Sbjct: 230 VVVDPEAYTYDDEVIKKAEAMGKSGLVDISAREDSFIFTVESTGAIKAAQLLLNAIEVLK 289

Query: 61  QKLDAVRLSDDTVEADDQFGELGAHMRGG 90
           QKLDAVRLS+DTVEADDQFGELGAHMRGG
Sbjct: 290 QKLDAVRLSEDTVEADDQFGELGAHMRGG 318

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
NRPB3_ARATH3.9e-3885.39DNA-directed RNA polymerases II, IV and V subunit 3 OS=Arabidopsis thaliana GN=N... [more]
RPD3B_ARATH6.3e-3682.02DNA-directed RNA polymerases IV and V subunit 3B OS=Arabidopsis thaliana GN=NRPD... [more]
RPB3_DICDI5.5e-0843.94DNA-directed RNA polymerase II subunit rpb3 OS=Dictyostelium discoideum GN=polr2... [more]
Match NameE-valueIdentityDescription
A0A0A0LHS1_CUCSA2.2e-4098.88Uncharacterized protein OS=Cucumis sativus GN=Csa_2G093850 PE=4 SV=1[more]
M5W886_PRUPE1.8e-3791.01Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008812mg PE=4 SV=1[more]
B9HS44_POPTR5.2e-3788.76DNA-directed RNA polymerase II 36 kDa polypeptide B family protein OS=Populus tr... [more]
A0A059BBW8_EUCGR1.2e-3688.76Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G01370 PE=4 SV=1[more]
A0A059WJH0_QUESU1.5e-3688.76RNA polymerase II OS=Quercus suber PE=2 SV=1[more]
Match NameE-valueIdentityDescription
AT2G15430.12.2e-3985.39 DNA-directed RNA polymerase family protein[more]
AT2G15400.13.5e-3782.02 DNA-directed RNA polymerase family protein[more]
Match NameE-valueIdentityDescription
gi|659082285|ref|XP_008441761.1|1.4e-40100.00PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerases II, IV and V subuni... [more]
gi|449442251|ref|XP_004138895.1|3.2e-4098.88PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3 [Cucumis sativus][more]
gi|658063503|ref|XP_008367672.1|8.8e-3891.01PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3-like [Malus domes... [more]
gi|470136511|ref|XP_004304034.1|1.1e-3792.13PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3 [Fragaria vesca s... [more]
gi|694413499|ref|XP_009335010.1|2.6e-3789.89PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3-like [Pyrus x bre... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009025RBP11-like_dimer
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0005730 nucleolus
molecular_function GO:0003677 DNA binding
molecular_function GO:0003899 DNA-directed RNA polymerase activity
molecular_function GO:0046983 protein dimerization activity
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU53014melon EST collection version 4.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C008590T1MELO3C008590T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU53014MU53014transcribed_cluster


Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009025DNA-directed RNA polymerase, RBP11-like dimerisation domainPFAMPF01193RNA_pol_Lcoord: 27..63
score: 1.
IPR009025DNA-directed RNA polymerase, RBP11-like dimerisation domainunknownSSF55257RBP11-like subunits of RNA polymerasecoord: 7..71
score: 2.75
NoneNo IPR availableGENE3DG3DSA:3.30.1360.10coord: 16..68
score: 2.1
NoneNo IPR availablePANTHERPTHR11800DNA-DIRECTED RNA POLYMERASEcoord: 1..87
score: 1.6

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C008590Csa2G093850Cucumber (Chinese Long) v2cumeB132
The following gene(s) are paralogous to this gene:

None