MELO3C005977.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C005977.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	StAR-related lipid transfer protein 9, putative
Location	chr06 : 338540 .. 340795 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTACCTCCTATGGGCTCTATATTGTCGACGGCGACGGCGACTGAATTACAAGGAAAGCAACGCAAAAGCGGAGAAAGAGATGGAGGAGAACGGAGGAAGCGACGGTGGTAGCAACGCCCATTGGTGGTGGGCTTTCGCCGGTGCAGGGCAGTTAGGTTGGGGTATCGCCTCTTTCCGGCGAGGATTTGTCGGTGATTCCAGCACCATGCCCCTTAAGGCCTTCGCCGTCGCTTCGCTTTTCGTCGGCGCTGCCGCCTCGTCTGCCATTGCTTCCCTCAAGGCCTCTGGCATCCACAAGGTTCACTTCACTGCTTTTCTACTGTGTATCTATCAGTCGCATTTTTTTCTTCATTCCTCCCCCTCATCCTGGATTAGGTTAGAGGTTAATTGGACGACTTTGATCAGTCTGGTTTTGTACTCGTATCGGGCTTTGGTGAATTAACTGAACATATCAGTTTTGATTCGTCAGTATGCCGTGAATTTAGCTAATTTCCAGGAGGAATGGGATTCTGAGTTTTTGGCAGCTTAGTTAGCTTAATTTGTTAATGTTTGATTCGGACTATCAATTTCGTTGACTTGAATAGTGAAATCGAGCAGGGGATGGAAAAATACTTCAGTAGGTGTCAGTTTCTTTGGTCGCATTAGATTATTTGTTGCTGATGCCAGATTTTAGTCGTGTTGTTTATCTCGGGCAGTTTGTTCACCAGGCTTGATGTTGTGCTTAAGTTCGAGAATCTTCTCAGTTGAATTTAGGTATTTTTATTTTGAGTGGTTGATTCATGCATATTTTTCATGTAGTTTTTTTTGGGTGTTATCCACTTCTTTACATTTAGAGGTTTAGGGTATGGGAAACTAAAAGTTTGTAACTTTCATAAACCTCATTTCAAGAGTACTCATAGAATATAATATTTTAGAATGTTGGACAGAAAGTGTAATGATGGAGTGGTGAATAGGACGCTCAGCAGAATTAAGTCTAAAAGAATGACATTCAAGCACAAACCCTTCGCCCAAAATTCTAATTTTTTTCTACTTCAAGATAATTTTGAAACCTTTATGGAGCAATTTTTGATAAAGGATAAAGTTCAAGAGTGTCTTTTTAGATAAAATAAAATTTAGTCTAAATTCTGGTACACTTAGAAACCACATACAAGTTGAGGCTTTGCCTCCTTCAAGTGGCCACCCTTATTGTAAAGGTGTGATCCTTCGAGTGAGAATTTAAGCTTTCCTTGTCTTTCCGTAGAAAGTGGTGTTAAACTCAATTCTGTAGCTTCTGTCAGTTCAATGCAAAAGTAACAGATGATTTTCTCGGTTAATAAGAATAACTGTAGAGTATCTGTTGTTTAGGAGTATGCAGGATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTTTCTTTTTTTTTAATGTCCTAGCTTCACGGTAATTGGTACATGATAGGCAGAGGTAATTTGAACATATTAAGAGCGATGCTATTTCACATAGGTGAAAGCCTCCATGATCAACAAGGTGGTAGATAGCATTCATGGTTATGAGAGGCTTGTGATATAGAAATAGGATCTCCATGACACCGTTATGAACTTAGAAGAACTTTGGTGACCAGAAATGGTTCTTTTTTTTTTCCTTCTTGTTCTAATGGATGAACAGATGAAGCCATTGTTATCAGTTCTTACAAAATCATGGGTTGGTGGAAATAATTTCAATGGACGCAGAATTTCTTAAAAAGTGTTCTGATCTGGACGAAAGAAAAGGAGAACATGTCTGAAAAACAAATTTACTAGATCTAGAAATGGGTGATAAAATGAATGGTACGATTACTAATTTTTGGTCTAGGGTTGTATTGGAACAGGTGGAAGACGTGATGGAAGTAGGGGCCAGAATCAGAAGTGGATTGGGGATTCGTTCAAGGGCACAAGATAAATGAGTATGGCAGCCTTTGTTATTCTATTCTGTGGGTAACTGGGAACATCTTCACTTTCACTTTGAGGAGCGCATATTCTCACCAACATGAGTCAACTAAAGTCATTCCATAGCACAGACTGAGCACTTTCTTCGATGGTGAAAGAGTTACGAAGGGTCAGATTCCATTTTTCTTTATCAACCCTTAATTTGGTACTTGCTCTTATAGAGAGGTCTCCTATAATTATTTTGCTGTGTAGCAATGAAATCAGATCACTGATTAAGGGCTTAGAGAGTTCTTCTAAATTGCCCTTAATTTACTTTACTGTTTACTTTAGATGTCCAACCTT

mRNA sequence

ATGGCCTACCTCCTATGGGCTCTATATTGTCGACGGCGACGGCGACTGAATTACAAGGAAAGCAACGCAAAAGCGGAGAAAGAGATGGAGGAGAACGGAGGAAGCGACGGTGGTAGCAACGCCCATTGGTGGTGGGCTTTCGCCGGTGCAGGGCAGTTAGGTTGGGGTATCGCCTCTTTCCGGCGAGGATTTGTCGGTGATTCCAGCACCATGCCCCTTAAGGCCTTCGCCGTCGCTTCGCTTTTCGTCGGCGCTGCCGCCTCGTCTGCCATTGCTTCCCTCAAGGCCTCTGGCATCCACAAGGTTCACTTCACTGCTTTTCTACTGTGTATCTATCAGTCGCATTTTTTTCTTCATTCCTCCCCCTCATCCTGGATTAGGTTAGAGGTTAATTGGACGACTTTGATCAGTCTGGTTTTGTACTCGTATCGGGCTTTGGTGAATTAACTGAACATATCAGTTTTGATTCGTCAGTATGCCGTGAATTTAGCTAATTTCCAGGAGGAATGGGATTCTGAGTTTTTGGCAGCTTAGTTAGCTTAATTTGTTAATGTTTGATTCGGACTATCAATTTCGTTGACTTGAATAGTGAAATCGAGCAGGGGATGGAAAAATACTTCAGTAGGTGTCAGTTTCTTTGGTCGCATTAGATTATTTGTTGCTGATGCCAGATTTTAGTCGTGTTGTTTATCTCGGGCAGTTTGTTCACCAGGCTTGATGTTGTGCTTAAGTTCGAGAATCTTCTCAGTTGAATTTAGGTGGAAGACGTGATGGAAGTAGGGGCCAGAATCAGAAGTGGATTGGGGATTCGTTCAAGGGCACAAGATAAATGAGTATGGCAGCCTTTGTTATTCTATTCTGTGGGTAACTGGGAACATCTTCACTTTCACTTTGAGGAGCGCATATTCTCACCAACATGAGTCAACTAAAGTCATTCCATAGCACAGACTGAGCACTTTCTTCGATGGTGAAAGAGTTACGAAGGGTCAGATTCCATTTTTCTTTATCAACCCTTAATTTGGTACTTGCTCTTATAGAGAGGTCTCCTATAATTATTTTGCTGTGTAGCAATGAAATCAGATCACTGATTAAGGGCTTAGAGAGTTCTTCTAAATTGCCCTTAATTTACTTTACTGTTTACTTTAGATGTCCAACCTT

Coding sequence (CDS)

ATGGCCTACCTCCTATGGGCTCTATATTGTCGACGGCGACGGCGACTGAATTACAAGGAAAGCAACGCAAAAGCGGAGAAAGAGATGGAGGAGAACGGAGGAAGCGACGGTGGTAGCAACGCCCATTGGTGGTGGGCTTTCGCCGGTGCAGGGCAGTTAGGTTGGGGTATCGCCTCTTTCCGGCGAGGATTTGTCGGTGATTCCAGCACCATGCCCCTTAAGGCCTTCGCCGTCGCTTCGCTTTTCGTCGGCGCTGCCGCCTCGTCTGCCATTGCTTCCCTCAAGGCCTCTGGCATCCACAAGGTTCACTTCACTGCTTTTCTACTGTGTATCTATCAGTCGCATTTTTTTCTTCATTCCTCCCCCTCATCCTGGATTAGGTTAGAGGTTAATTGGACGACTTTGATCAGTCTGGTTTTGTACTCGTATCGGGCTTTGGTGAATTAA

Protein sequence

MAYLLWALYCRRRRRLNYKESNAKAEKEMEENGGSDGGSNAHWWWAFAGAGQLGWGIASFRRGFVGDSSTMPLKAFAVASLFVGAAASSAIASLKASGIHKVHFTAFLLCIYQSHFFLHSSPSSWIRLEVNWTTLISLVLYSYRALVN

Homology

[Close]

BLAST of MELO3C005977.2 vs. NCBI nr
Match: XP_008437814.1 (PREDICTED: uncharacterized protein LOC103483131 [Cucumis melo])

HSP 1 Score: 149.4 bits (376), Expect = 9.3e-33
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MAYLLWALYCRRRRRLNYKESNAKAXXXXXXXXXXXXXXXXXXXXAFAGAGQLGWGIASF 60
           MAYLLWALYCRRRRRLNYKESNAKAXXXXXXXXXXXXXXXXXXXXAFAGAGQLGWGIASF
Sbjct: 1   MAYLLWALYCRRRRRLNYKESNAKAXXXXXXXXXXXXXXXXXXXXAFAGAGQLGWGIASF 60

Query: 61  RRGFVGDSSTMPLKAFAVASLFVGAAASSAIASLKASGIHKV 103
           RRGFVGDSSTMPLKAFAVASLFVGAAASSAIASLKASGIHKV
Sbjct: 61  RRGFVGDSSTMPLKAFAVASLFVGAAASSAIASLKASGIHKV 102

[Close]

BLAST of MELO3C005977.2 vs. NCBI nr
Match: XP_004133779.1 (PREDICTED: uncharacterized protein LOC101221895 [Cucumis sativus] >KGN56372.1 hypothetical protein Csa_3G118070 [Cucumis sativus])

HSP 1 Score: 100.5 bits (249), Expect = 5.0e-18
Identity = 53/57 (92.98%), Postives = 54/57 (94.74%), Query Frame = 0


Query: 46  AFAGAGQLGWGIASFRRGFVGDSSTMPLKAFAVASLFVGAAASSAIASLKASGIHKV 103
           AFAGA QLGWGIASFRRGF+GDSS MPLKAFAVASLFVGAAASS IASLKASGIHKV
Sbjct: 18  AFAGAAQLGWGIASFRRGFIGDSSNMPLKAFAVASLFVGAAASSTIASLKASGIHKV 74

[Close]

BLAST of MELO3C005977.2 vs. NCBI nr
Match: XP_022145350.1 (uncharacterized protein LOC111014824 [Momordica charantia])

HSP 1 Score: 93.6 bits (231), Expect = 6.1e-16
Identity = 50/57 (87.72%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 46  AFAGAGQLGWGIASFRRGFVGDSSTMPLKAFAVASLFVGAAASSAIASLKASGIHKV 103
           A AGA Q GWGIASFRRGF+G+SS MP KAFAVASLFVGAAASSAIASLKASGIHKV
Sbjct: 17  ALAGATQFGWGIASFRRGFIGNSSLMPFKAFAVASLFVGAAASSAIASLKASGIHKV 73

[Close]

BLAST of MELO3C005977.2 vs. NCBI nr
Match: XP_022974845.1 (uncharacterized protein LOC111473617 isoform X1 [Cucurbita maxima] >XP_022975308.1 uncharacterized protein LOC111474468 isoform X1 [Cucurbita maxima])

HSP 1 Score: 92.0 bits (227), Expect = 1.8e-15
Identity = 49/57 (85.96%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 46  AFAGAGQLGWGIASFRRGFVGDSSTMPLKAFAVASLFVGAAASSAIASLKASGIHKV 103
           A AGA QLGWGIASFRRG +GDSS MP KAFAVASLFVGAA+SSAIASLKA+GIHKV
Sbjct: 45  ALAGATQLGWGIASFRRGVIGDSSLMPFKAFAVASLFVGAASSSAIASLKAAGIHKV 101

[Close]

BLAST of MELO3C005977.2 vs. NCBI nr
Match: XP_022941577.1 (uncharacterized protein LOC111446882 isoform X2 [Cucurbita moschata])

HSP 1 Score: 91.7 bits (226), Expect = 2.3e-15
Identity = 49/57 (85.96%), Postives = 51/57 (89.47%), Query Frame = 0


Query: 46  AFAGAGQLGWGIASFRRGFVGDSSTMPLKAFAVASLFVGAAASSAIASLKASGIHKV 103
           A AGA Q GWGIASFRRG +GDSS MP KAFAVASLFVGAAASSAIASLKA+GIHKV
Sbjct: 45  ALAGATQFGWGIASFRRGVIGDSSLMPFKAFAVASLFVGAAASSAIASLKAAGIHKV 101

[Close]

BLAST of MELO3C005977.2 vs. TAIR10
Match: AT3G60480.1 (unknown protein)

HSP 1 Score: 61.2 bits (147), Expect = 6.1e-10
Identity = 31/57 (54.39%), Postives = 40/57 (70.18%), Query Frame = 0


Query: 46  AFAGAGQLGWGIASFRRGFVGDSSTMPLKAFAVASLFVGAAASSAIASLKASGIHKV 103
           A     Q+ WGI   RRG+ GD   MPLKAF VASLFVG+ A+S++A ++A+GIH V
Sbjct: 25  ALGSGAQIMWGIRLIRRGYAGDVRLMPLKAFGVASLFVGSLATSSVALVRATGIHTV 81

[Close]

BLAST of MELO3C005977.2 vs. TrEMBL
Match: tr|A0A1S3AUW2|A0A1S3AUW2_CUCME (uncharacterized protein LOC103483131 OS=Cucumis melo OX=3656 GN=LOC103483131 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 6.2e-33
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MAYLLWALYCRRRRRLNYKESNAKAXXXXXXXXXXXXXXXXXXXXAFAGAGQLGWGIASF 60
           MAYLLWALYCRRRRRLNYKESNAKAXXXXXXXXXXXXXXXXXXXXAFAGAGQLGWGIASF
Sbjct: 1   MAYLLWALYCRRRRRLNYKESNAKAXXXXXXXXXXXXXXXXXXXXAFAGAGQLGWGIASF 60

Query: 61  RRGFVGDSSTMPLKAFAVASLFVGAAASSAIASLKASGIHKV 103
           RRGFVGDSSTMPLKAFAVASLFVGAAASSAIASLKASGIHKV
Sbjct: 61  RRGFVGDSSTMPLKAFAVASLFVGAAASSAIASLKASGIHKV 102

[Close]

BLAST of MELO3C005977.2 vs. TrEMBL
Match: tr|A0A0A0L700|A0A0A0L700_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G118070 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 3.3e-18
Identity = 53/57 (92.98%), Postives = 54/57 (94.74%), Query Frame = 0


Query: 46  AFAGAGQLGWGIASFRRGFVGDSSTMPLKAFAVASLFVGAAASSAIASLKASGIHKV 103
           AFAGA QLGWGIASFRRGF+GDSS MPLKAFAVASLFVGAAASS IASLKASGIHKV
Sbjct: 18  AFAGAAQLGWGIASFRRGFIGDSSNMPLKAFAVASLFVGAAASSTIASLKASGIHKV 74

[Close]

BLAST of MELO3C005977.2 vs. TrEMBL
Match: tr|A0A2P5DAB7|A0A2P5DAB7_9ROSA (StAR lipid transfer-like protein OS=Trema orientalis OX=63057 GN=TorRG33x02_257720 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.4e-13
Identity = 44/55 (80.00%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 48  AGAGQLGWGIASFRRGFVGDSSTMPLKAFAVASLFVGAAASSAIASLKASGIHKV 103
           A AGQLGWGIASFRRG+ G S+ MPLKAFAVASLFVGAAAS++ A+L ASGIHKV
Sbjct: 42  ASAGQLGWGIASFRRGYAGHSNLMPLKAFAVASLFVGAAASASFAALHASGIHKV 96

[Close]

BLAST of MELO3C005977.2 vs. TrEMBL
Match: tr|A0A2P5CIM2|A0A2P5CIM2_PARAD (StAR lipid transfer-like protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_150190 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 7.9e-12
Identity = 43/55 (78.18%), Postives = 48/55 (87.27%), Query Frame = 0


Query: 48  AGAGQLGWGIASFRRGFVGDSSTMPLKAFAVASLFVGAAASSAIASLKASGIHKV 103
           A AGQLG GIASFRRG+ G S+ MPLKAFAVASLFVGAAAS++ A+L ASGIHKV
Sbjct: 34  ASAGQLGLGIASFRRGYAGHSNLMPLKAFAVASLFVGAAASASFAALHASGIHKV 88

[Close]

BLAST of MELO3C005977.2 vs. TrEMBL
Match: tr|F6GV86|F6GV86_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_15s0021g02030 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.3e-11
Identity = 42/57 (73.68%), Postives = 46/57 (80.70%), Query Frame = 0


Query: 46  AFAGAGQLGWGIASFRRGFVGDSSTMPLKAFAVASLFVGAAASSAIASLKASGIHKV 103
           A A A QLGWG+ S+RRG VGDSS MP+KAF VASLFVGAAAS+A   L ASGIHKV
Sbjct: 17  ALASAAQLGWGVFSYRRGGVGDSSLMPVKAFGVASLFVGAAASAAFGVLHASGIHKV 73

The following BLAST results are available for this feature:

BLAST of MELO3C005977.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008437814.1	9.3e-33	100.00	PREDICTED: uncharacterized protein LOC103483131 [Cucumis melo]	[more]
XP_004133779.1	5.0e-18	92.98	PREDICTED: uncharacterized protein LOC101221895 [Cucumis sativus] >KGN56372.1 hy...	[more]
XP_022145350.1	6.1e-16	87.72	uncharacterized protein LOC111014824 [Momordica charantia]	[more]
XP_022974845.1	1.8e-15	85.96	uncharacterized protein LOC111473617 isoform X1 [Cucurbita maxima] >XP_022975308...	[more]
XP_022941577.1	2.3e-15	85.96	uncharacterized protein LOC111446882 isoform X2 [Cucurbita moschata]	[more]

BLAST of MELO3C005977.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G60480.1	6.1e-10	54.39	unknown protein	[more]

BLAST of MELO3C005977.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C005977.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AUW2\|A0A1S3AUW2_CUCME	6.2e-33	100.00	uncharacterized protein LOC103483131 OS=Cucumis melo OX=3656 GN=LOC103483131 PE=...	[more]
tr\|A0A0A0L700\|A0A0A0L700_CUCSA	3.3e-18	92.98	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G118070 PE=4 SV=1	[more]
tr\|A0A2P5DAB7\|A0A2P5DAB7_9ROSA	2.4e-13	80.00	StAR lipid transfer-like protein OS=Trema orientalis OX=63057 GN=TorRG33x02_2577...	[more]
tr\|A0A2P5CIM2\|A0A2P5CIM2_PARAD	7.9e-12	78.18	StAR lipid transfer-like protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_...	[more]
tr\|F6GV86\|F6GV86_VITVI	1.3e-11	73.68	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_15s0021g02030 PE=4 SV=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C005977.2.1	MELO3C005977.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37744	FAMILY NOT NAMED	coord: 29..103

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C005977.2	Csa3G118070	Cucumber (Chinese Long) v2	cumedB223
MELO3C005977.2	CSPI03G07420	Wild cucumber (PI 183967)	cpimedB224
MELO3C005977.2	Cucsa.259720	Cucumber (Gy14) v1	cgymedB432
MELO3C005977.2	CmaCh06G010020	Cucurbita maxima (Rimu)	cmamedB873
MELO3C005977.2	CmoCh14G022140	Cucurbita moschata (Rifu)	cmomedB260
MELO3C005977.2	CmoCh06G010030	Cucurbita moschata (Rifu)	cmomedB857
MELO3C005977.2	Cp4.1LG03g15780	Cucurbita pepo (Zucchini)	cpemedB693
MELO3C005977.2	Cp4.1LG08g00520	Cucurbita pepo (Zucchini)	cpemedB951
MELO3C005977.2	CsGy3G007550	Cucumber (Gy14) v2	cgybmedB201
MELO3C005977.2	Cla021106	Watermelon (97103) v1	medwmB447
MELO3C005977.2	ClCG05G000390	Watermelon (Charleston Gray)	medwcgB416
MELO3C005977.2	Cla97C05G080360	Watermelon (97103) v2	medwmbB423
MELO3C005977.2	Bhi01G000411	Wax gourd	medwgoB542
MELO3C005977.2	Carg17668	Silver-seed gourd	carmedB0142
MELO3C005977.2	Carg24159	Silver-seed gourd	carmedB0101
MELO3C005977.2	CsaV3_3G007550	Cucumber (Chinese Long) v3	cucmedB230

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C005977.2	Cucurbita maxima (Rimu)	cmamedB273
MELO3C005977.2	Cucurbita maxima (Rimu)	cmamedB863
MELO3C005977.2	Bottle gourd (USVL1VR-Ls)	lsimedB396