Carg24159 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24159
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	StAR lipid transfer-like protein
Location	Cucurbita_argyrosperma_scaffold_221 : 11451 .. 12641 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCTACACGGGTTCTAAATCGTTGACGGCGACGGCGACAGAATGGGGAAAAGAGAAAGGCGAAAGCAGGGAAAGAGAGATGGTGGAGAACGGAGGGAGCGACGGTGGTAGCAACGCCCATTGGTGGTGGGCCTTGGCCGGCGCGACGCAGTTTGGTTGGGGTATCGCCTCTTTCCGGCGAGGAGTTATTGGCGATTCTAGCCTCATGCCCTTTAAGGCCTTCGCCGTTGCTTCGCTTTTCGTCGGCGCTGCTGCCTCGTCCGCCATCGCTTCCTTAAAGGCCGCCGGCATCCATAAGGTTTACTTCACCTTATTTCCTATTCTGCATCTAGTAGTTGCATTTCTTCTCCTTCCCTCCCCCTGATTTGGATTGGTTTAGAGGTTAATTGCGCAACTCTGATTAAGTTGGCTTTGATCTCGTGTCGTCCTTTGAAGAATTAACTCTCAGCCAAATTTTATTCGTCGCATGTGGTGAATTCGTTTAGTTTTTAACTCTCAGTTTGATCGAAACACTGAAATTGGAAACAATTGATCGAATCAGAATTCGCGTCCATTGATTAAGAAGAAAAATATTTTTGTAGGTTTTAGATTTTTAGGTTGTGTTGGATTCTTTGCAGCTGATATTAATCATCTTGCTGTTAATTTCGAGCATTTTCTCACTTAGCTTGATGTTGCTGTGAAATTCAGGTATGTTCTTGATTGAATTTAGACATTTTTTTACATGATTTGAGCATTGATGCCATGATAGACTGAACTTATAAAAGAACTTTAGTAACGAGCATTGTTTTCATCCAATCTAATAATGGTTGCTGTTGTTGGGTAGTGGAAGAGAAATTATTTTCAGATCAGCCTCAGTTCATTGCCTTTGTAGAAATTTTCTTACTGCGTTTGTAAATCACTATCAAAATGTGTTTAAGCAGTGTTCTGATTTCTTGTTGCTCTTATGGATGAACCAAATGAAGCCATTATTGTCATTCCTCACACAAAATCAGGGGCTTGATCTTGATTTATGTAAGAAAAAATATGTTTGGAGAAGCAATGTAATCTGGAAATTCTTGCTGAAGTCAAGTGTTTGAATACAAATTTGTGGGTTTGGTGTGTTGTGTTGTATCAGGTTGAAGACGTGATGGAAGTAGGAGCTAATATCAGAACTGGTTTGGGGATTCGTCCAAGAACACGAGATGAATGA

mRNA sequence

ATGGTCTACACGGGTTCTAAATCGTTGACGGCGACGGCGACAGAATGGGGAAAAGAGAAAGGCGAAAGCAGGGAAAGAGAGATGGTGGAGAACGGAGGGAGCGACGGTGGTAGCAACGCCCATTGGTGGTGGGCCTTGGCCGGCGCGACGCAGTTTGGTTGGGGTATCGCCTCTTTCCGGCGAGGAGTTATTGGCGATTCTAGCCTCATGCCCTTTAAGGCCTTCGCCGTTGCTTCGCTTTTCGTCGGCGCTGCTGCCTCGTCCGCCATCGCTTCCTTAAAGGCCGCCGGCATCCATAAGGTTGAAGACGTGATGGAAGTAGGAGCTAATATCAGAACTGGTTTGGGGATTCGTCCAAGAACACGAGATGAATGA

Coding sequence (CDS)

ATGGTCTACACGGGTTCTAAATCGTTGACGGCGACGGCGACAGAATGGGGAAAAGAGAAAGGCGAAAGCAGGGAAAGAGAGATGGTGGAGAACGGAGGGAGCGACGGTGGTAGCAACGCCCATTGGTGGTGGGCCTTGGCCGGCGCGACGCAGTTTGGTTGGGGTATCGCCTCTTTCCGGCGAGGAGTTATTGGCGATTCTAGCCTCATGCCCTTTAAGGCCTTCGCCGTTGCTTCGCTTTTCGTCGGCGCTGCTGCCTCGTCCGCCATCGCTTCCTTAAAGGCCGCCGGCATCCATAAGGTTGAAGACGTGATGGAAGTAGGAGCTAATATCAGAACTGGTTTGGGGATTCGTCCAAGAACACGAGATGAATGA

Protein sequence

MVYTGSKSLTATATEWGKEKGESREREMVENGGSDGGSNAHWWWALAGATQFGWGIASFRRGVIGDSSLMPFKAFAVASLFVGAAASSAIASLKAAGIHKVEDVMEVGANIRTGLGIRPRTRDE

Homology

[Close]

BLAST of Carg24159 vs. NCBI nr
Match: XP_022941577.1 (uncharacterized protein LOC111446882 isoform X2 [Cucurbita moschata])

HSP 1 Score: 241.9 bits (616), Expect = 1.2e-60
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0


Query: 1   MVYTGSKSLTATATEWGKEKGESREREMVENGGSDGGSNAHWWWALAGATQFGWGIASFR 60
           MVYTGSKSLTATATEWGKEKGESREREMVENGGSDGGSNAHWWWALAGATQFGWGIASFR
Sbjct: 1   MVYTGSKSLTATATEWGKEKGESREREMVENGGSDGGSNAHWWWALAGATQFGWGIASFR 60

Query: 61  RGVIGDSSLMPFKAFAVASLFVGAAASSAIASLKAAGIHKVEDVMEVGANIRTGLGIRPR 120
           RGVIGDSSLMPFKAFAVASLFVGAAASSAIASLKAAGIHKVEDVMEVGANIRTGLGIRPR
Sbjct: 61  RGVIGDSSLMPFKAFAVASLFVGAAASSAIASLKAAGIHKVEDVMEVGANIRTGLGIRPR 120

Query: 121 TRDE 125
           TRDE
Sbjct: 121 TRDE 124

[Close]

BLAST of Carg24159 vs. NCBI nr
Match: XP_022974845.1 (uncharacterized protein LOC111473617 isoform X1 [Cucurbita maxima] >XP_022975308.1 uncharacterized protein LOC111474468 isoform X1 [Cucurbita maxima])

HSP 1 Score: 234.6 bits (597), Expect = 1.8e-58
Identity = 120/124 (96.77%), Postives = 122/124 (98.39%), Query Frame = 0


Query: 1   MVYTGSKSLTATATEWGKEKGESREREMVENGGSDGGSNAHWWWALAGATQFGWGIASFR 60
           MV+TGSKSLTATATEWGKEKGESREREMVENGGSDGGSNAHWWWALAGATQ GWGIASFR
Sbjct: 1   MVHTGSKSLTATATEWGKEKGESREREMVENGGSDGGSNAHWWWALAGATQLGWGIASFR 60

Query: 61  RGVIGDSSLMPFKAFAVASLFVGAAASSAIASLKAAGIHKVEDVMEVGANIRTGLGIRPR 120
           RGVIGDSSLMPFKAFAVASLFVGAA+SSAIASLKAAGIHKVEDVMEVGANIR GLGIRPR
Sbjct: 61  RGVIGDSSLMPFKAFAVASLFVGAASSSAIASLKAAGIHKVEDVMEVGANIRNGLGIRPR 120

Query: 121 TRDE 125
           TRDE
Sbjct: 121 TRDE 124

[Close]

BLAST of Carg24159 vs. NCBI nr
Match: XP_022941569.1 (uncharacterized protein LOC111446882 isoform X1 [Cucurbita moschata])

HSP 1 Score: 195.3 bits (495), Expect = 1.2e-46
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MVYTGSKSLTATATEWGKEKGESREREMVENGGSDGGSNAHWWWALAGATQFGWGIASFR 60
           MVYTGSKSLTATATEWGKEKGESREREMVENGGSDGGSNAHWWWALAGATQFGWGIASFR
Sbjct: 1   MVYTGSKSLTATATEWGKEKGESREREMVENGGSDGGSNAHWWWALAGATQFGWGIASFR 60

Query: 61  RGVIGDSSLMPFKAFAVASLFVGAAASSAIASLKAAGIHK 101
           RGVIGDSSLMPFKAFAVASLFVGAAASSAIASLKAAGIHK
Sbjct: 61  RGVIGDSSLMPFKAFAVASLFVGAAASSAIASLKAAGIHK 100

[Close]

BLAST of Carg24159 vs. NCBI nr
Match: XP_023540026.1 (uncharacterized protein LOC111800524 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 193.4 bits (490), Expect = 4.7e-46
Identity = 97/100 (97.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 25  EREMVENGGSDGGSNAHWWWALAGATQFGWGIASFRRGVIGDSSLMPFKAFAVASLFVGA 84
           +R+MVENGGSDGGSNAHWWWALAGATQFGWGIASFRRGVIGDSSLMPFKAFAVASLFVGA
Sbjct: 3   KRDMVENGGSDGGSNAHWWWALAGATQFGWGIASFRRGVIGDSSLMPFKAFAVASLFVGA 62

Query: 85  AASSAIASLKAAGIHKVEDVMEVGANIRTGLGIRPRTRDE 125
           AASSAIASLKAAGIHKVEDVMEVGANIRTGLG+RPRTRDE
Sbjct: 63  AASSAIASLKAAGIHKVEDVMEVGANIRTGLGVRPRTRDE 102

[Close]

BLAST of Carg24159 vs. NCBI nr
Match: XP_022974846.1 (uncharacterized protein LOC111473617 isoform X2 [Cucurbita maxima] >XP_022975309.1 uncharacterized protein LOC111474468 isoform X2 [Cucurbita maxima])

HSP 1 Score: 189.9 bits (481), Expect = 5.2e-45
Identity = 97/100 (97.00%), Postives = 99/100 (99.00%), Query Frame = 0


Query: 1   MVYTGSKSLTATATEWGKEKGESREREMVENGGSDGGSNAHWWWALAGATQFGWGIASFR 60
           MV+TGSKSLTATATEWGKEKGESREREMVENGGSDGGSNAHWWWALAGATQ GWGIASFR
Sbjct: 1   MVHTGSKSLTATATEWGKEKGESREREMVENGGSDGGSNAHWWWALAGATQLGWGIASFR 60

Query: 61  RGVIGDSSLMPFKAFAVASLFVGAAASSAIASLKAAGIHK 101
           RGVIGDSSLMPFKAFAVASLFVGAA+SSAIASLKAAGIHK
Sbjct: 61  RGVIGDSSLMPFKAFAVASLFVGAASSSAIASLKAAGIHK 100

[Close]

BLAST of Carg24159 vs. TAIR10
Match: AT3G60480.1 (unknown protein)

HSP 1 Score: 100.5 bits (249), Expect = 7.6e-22
Identity = 50/101 (49.50%), Postives = 67/101 (66.34%), Query Frame = 0


Query: 30  ENGGSDGGSNA------HWWWALAGATQFGWGIASFRRGVIGDSSLMPFKAFAVASLFVG 89
           +N G+  G ++      HWWWAL    Q  WGI   RRG  GD  LMP KAF VASLFVG
Sbjct: 4   QNAGTGAGESSLLDGSGHWWWALGSGAQIMWGIRLIRRGYAGDVRLMPLKAFGVASLFVG 63

Query: 90  AAASSAIASLKAAGIHKVEDVMEVGANIRTGLGIRPRTRDE 125
           + A+S++A ++A GIH V+D +++GANIRT LG+ P+  D+
Sbjct: 64  SLATSSVALVRATGIHTVQDAIDLGANIRTNLGVTPQIPDK 104

[Close]

BLAST of Carg24159 vs. TrEMBL
Match: tr|A0A0A0L700|A0A0A0L700_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G118070 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 6.5e-36
Identity = 81/97 (83.51%), Postives = 85/97 (87.63%), Query Frame = 0


Query: 28  MVENGGSDGGSNAHWWWALAGATQFGWGIASFRRGVIGDSSLMPFKAFAVASLFVGAAAS 87
           M ENGGSD GSNAHWWWA AGA Q GWGIASFRRG IGDSS MP KAFAVASLFVGAAAS
Sbjct: 1   MEENGGSDAGSNAHWWWAFAGAAQLGWGIASFRRGFIGDSSNMPLKAFAVASLFVGAAAS 60

Query: 88  SAIASLKAAGIHKVEDVMEVGANIRTGLGIRPRTRDE 125
           S IASLKA+GIHKVEDVMEVGA IR+GLGIR R +D+
Sbjct: 61  STIASLKASGIHKVEDVMEVGARIRSGLGIRSRAQDK 97

[Close]

BLAST of Carg24159 vs. TrEMBL
Match: tr|A0A2I4HDZ6|A0A2I4HDZ6_9ROSI (uncharacterized protein LOC109016350 OS=Juglans regia OX=51240 GN=LOC109016350 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.1e-27
Identity = 65/97 (67.01%), Postives = 77/97 (79.38%), Query Frame = 0


Query: 28  MVENGGSDGGSNAHWWWALAGATQFGWGIASFRRGVIGDSSLMPFKAFAVASLFVGAAAS 87
           M+E+    G +  HWWWALA   Q G G++S+RRG  GDS LMP KAF VASLFVGAAAS
Sbjct: 1   MMEDEKEGGRTYGHWWWALASGAQLGLGVSSYRRGYAGDSRLMPLKAFVVASLFVGAAAS 60

Query: 88  SAIASLKAAGIHKVEDVMEVGANIRTGLGIRPRTRDE 125
           +A++ LKA+GIHKVED+MEVGANIR GLG+RPR RDE
Sbjct: 61  TAVSVLKASGIHKVEDLMEVGANIRAGLGVRPRARDE 97

[Close]

BLAST of Carg24159 vs. TrEMBL
Match: tr|A0A1R3HGR4|A0A1R3HGR4_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_19420 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.1e-27
Identity = 66/102 (64.71%), Postives = 83/102 (81.37%), Query Frame = 0


Query: 27  EMVENGGSDGGSN----AHWWWALAGATQFGWGIASFRRGVIGDSSLMPFKAFAVASLFV 86
           EM E+GG DGG      +HW+WA+A   QFGW ++S+R+G  G+  +MP KAFAVASLF+
Sbjct: 2   EMEESGG-DGGDRTRIPSHWYWAMASVAQFGWAVSSYRKGYAGNHQMMPLKAFAVASLFI 61

Query: 87  GAAASSAIASLKAAGIHKVEDVMEVGANIRTGLGIRPRTRDE 125
           GA+AS+++A LKA+GIHKVED+ EVGANIRTGLGIRPRTRDE
Sbjct: 62  GASASASVAFLKASGIHKVEDLREVGANIRTGLGIRPRTRDE 102

[Close]

BLAST of Carg24159 vs. TrEMBL
Match: tr|F6GV86|F6GV86_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_15s0021g02030 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 3.2e-27
Identity = 63/92 (68.48%), Postives = 73/92 (79.35%), Query Frame = 0


Query: 29  VENGGSDGGSNAHWWWALAGATQFGWGIASFRRGVIGDSSLMPFKAFAVASLFVGAAASS 88
           +E  G   G  +HWWWALA A Q GWG+ S+RRG +GDSSLMP KAF VASLFVGAAAS+
Sbjct: 1   MEENGHGSGDGSHWWWALASAAQLGWGVFSYRRGGVGDSSLMPVKAFGVASLFVGAAASA 60

Query: 89  AIASLKAAGIHKVEDVMEVGANIRTGLGIRPR 121
           A   L A+GIHKVED+ E+GANIRTGLG+RPR
Sbjct: 61  AFGVLHASGIHKVEDLKEMGANIRTGLGVRPR 92

[Close]

BLAST of Carg24159 vs. TrEMBL
Match: tr|A0A1R3K0T5|A0A1R3K0T5_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_12436 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.2e-26
Identity = 62/100 (62.00%), Postives = 78/100 (78.00%), Query Frame = 0


Query: 29  VENGGSDGGSN----AHWWWALAGATQFGWGIASFRRGVIGDSSLMPFKAFAVASLFVGA 88
           VE  G DGG      +HW+WA+A   QFGW ++S+R+G  G+  LMP KAFAVASLF+GA
Sbjct: 3   VEKSGGDGGDRTRIPSHWYWAMASVAQFGWAVSSYRKGYAGNHQLMPLKAFAVASLFIGA 62

Query: 89  AASSAIASLKAAGIHKVEDVMEVGANIRTGLGIRPRTRDE 125
           + S+++A LKA+GIHKVED+MEVG +IRTGLGIRPR RDE
Sbjct: 63  STSASVAFLKASGIHKVEDLMEVGTSIRTGLGIRPRARDE 102

The following BLAST results are available for this feature:

BLAST of Carg24159 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022941577.1	1.2e-60	100.00	uncharacterized protein LOC111446882 isoform X2 [Cucurbita moschata]	[more]
XP_022974845.1	1.8e-58	96.77	uncharacterized protein LOC111473617 isoform X1 [Cucurbita maxima] >XP_022975308...	[more]
XP_022941569.1	1.2e-46	100.00	uncharacterized protein LOC111446882 isoform X1 [Cucurbita moschata]	[more]
XP_023540026.1	4.7e-46	97.00	uncharacterized protein LOC111800524 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022974846.1	5.2e-45	97.00	uncharacterized protein LOC111473617 isoform X2 [Cucurbita maxima] >XP_022975309...	[more]

BLAST of Carg24159 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G60480.1	7.6e-22	49.50	unknown protein	[more]

BLAST of Carg24159 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg24159 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L700\|A0A0A0L700_CUCSA	6.5e-36	83.51	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G118070 PE=4 SV=1	[more]
tr\|A0A2I4HDZ6\|A0A2I4HDZ6_9ROSI	1.1e-27	67.01	uncharacterized protein LOC109016350 OS=Juglans regia OX=51240 GN=LOC109016350 P...	[more]
tr\|A0A1R3HGR4\|A0A1R3HGR4_COCAP	1.1e-27	64.71	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_19420 PE=4 ...	[more]
tr\|F6GV86\|F6GV86_VITVI	3.2e-27	68.48	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_15s0021g02030 PE=4 SV=...	[more]
tr\|A0A1R3K0T5\|A0A1R3K0T5_9ROSI	1.2e-26	62.00	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_12436 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24159-RA	Carg24159-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..31
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..36
None	No IPR available	PANTHER	PTHR37744	FAMILY NOT NAMED	coord: 28..123

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg24159	Cla021106	Watermelon (97103) v1	carwmB0094
Carg24159	Csa3G118070	Cucumber (Chinese Long) v2	carcuB0105
Carg24159	MELO3C005977	Melon (DHL92) v3.5.1	carmeB0099
Carg24159	ClCG05G000390	Watermelon (Charleston Gray)	carwcgB0096
Carg24159	CSPI03G07420	Wild cucumber (PI 183967)	carcpiB0110
Carg24159	Cucsa.259720	Cucumber (Gy14) v1	carcgyB0117
Carg24159	CmoCh06G010030	Cucurbita moschata (Rifu)	carcmoB0137
Carg24159	CmoCh14G022140	Cucurbita moschata (Rifu)	carcmoB0136
Carg24159	Cp4.1LG03g15780	Cucurbita pepo (Zucchini)	carcpeB0144
Carg24159	Cp4.1LG08g00520	Cucurbita pepo (Zucchini)	carcpeB0145
Carg24159	CsGy3G007550	Cucumber (Gy14) v2	carcgybB0105
Carg24159	MELO3C005977.2	Melon (DHL92) v3.6.1	carmedB0101
Carg24159	CsaV3_3G007550	Cucumber (Chinese Long) v3	carcucB0114
Carg24159	Cla97C05G080360	Watermelon (97103) v2	carwmbB0098
Carg24159	Bhi01G000411	Wax gourd	carwgoB0111

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg24159	Carg17668	Silver-seed gourd	carcarB109

The following block(s) are covering this gene:


Gene	Organism	Block
Carg24159	Cucurbita maxima (Rimu)	carcmaB0127
Carg24159	Bottle gourd (USVL1VR-Ls)	carlsiB088