Cp4.1LG03g15780 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG03g15780
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionStAR-related lipid transfer protein 9, putative
LocationCp4.1LG03 : 13612283 .. 13613519 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGAGAACGGAGGAAGCGACGGTGTTAGCAACGCCCACTGGTGGTGGGCTTTGGCCGGCGCAACACAGCTTGGTTGGGGTATCGCCTCTTTTCGGCGAGGATTGATCGGCAATTCCAGCCTCATGCCCTTAAAGGCCTTCGCCGTTGCTTCGCTTTTCGTCGGCGGCGGCGCCTCGTGTGCCATCGCTTCCCTCAAGGCCTCTGGCATCCACAAGGTTCACTTCACTTCACTTCACTTCACTTCACTTCTTTCACACTGCATTTACCAGTCGCGTTTCTTCATTTCTGGAATTAGGTTACACGTTAATTCGGTACACTTATCAATCTGGTTATGTACTCGTATCGGCATTTGCAGAATTAACTGAGCAAACCAAATCTCATTTGTCAGTATACTGTGAATTTAGGTATTATTCAGGAGATATGCAAGTTAGCTTGGTTAATTTTTAATTGAACTATCAATTTCGTTGAATTGAATACTGAAATGGAACAAGGAATGAACCTAATATAGGAGGAGTTCCACTCATTGTTGTGAGTCTTAAGTTTTTTAGGATACTTTGTTCCTGATATTAGTCGTGTTGTTTACTTTGAGCATCTTTTTTCACCTGGCTTGATGTTAGAATTTAGTAAATTTTTTCTCAGGTTTTTGAGTATTGGATGGTTTATGCATAAATTTTGAATCCAGGGTTTGATTAGTAGTTTTTGGTTTTGGTTGGGGTGCATTGGAACAGGTGGAAGACGTGATGGAAGTAGGGGCTAGTATTAGGAGTGGATTGGGGATTCGTCCAAGGCCACAAGATGAATGAATCTTATTCTATTCTATTGGTAACCTGAGAACATCTTCTCCTTCACCTTCACCTTCTCCTTCACCTTCACTTTCAGGAATCCAAATTCATACCACAGACGACTGTGCACCTTCTTTGATGGTGAAACAGTCACGAGGGGTCCGATTCCTTAATTAAAGGACTCCTGAAATTATTTTGTGTGTACCACTGAAATGGCATTAAGGATTAAGAACCTGTTGGAATCACTTTTTTCTATCTCCATTACTTTACTTCACTGCTTACTTTTATATGTCCATGACCTTCCTTCGCTTACATTTCCTTTTTTTCCTTCTATTTTGGTAAAATCATCTTTTCTGAATCTGTCAATCTTGGTAAAATCCTCATGACTTCCAAGAATACAATAGATTTACTGTGCGTAATTGACCTCATAAGCCTACTGCTATAAGCATAA

mRNA sequence

ATGGAGGAGAACGGAGGAAGCGACGGTGTTAGCAACGCCCACTGGTGGTGGGCTTTGGCCGGCGCAACACAGCTTGGTTGGGGTATCGCCTCTTTTCGGCGAGGATTGATCGGCAATTCCAGCCTCATGCCCTTAAAGGCCTTCGCCGTTGCTTCGCTTTTCGTCGGCGGCGGCGCCTCGTGTGCCATCGCTTCCCTCAAGGCCTCTGGCATCCACAAGGTTCACTTCACTTCACTTCACTTCACTTCACTTCTTTCACACTGCATTTACCAGTCGCGTTTCTTCATTTCTGGAATTAGGTTACACGTTAATTCGGTGGAAGACGTGATGGAAGTAGGGGCTAGTATTAGGAGTGGATTGGGGATTCGTCCAAGGCCACAAGATGAATGAATCTTATTCTATTCTATTGGTAACCTGAGAACATCTTCTCCTTCACCTTCACCTTCTCCTTCACCTTCACTTTCAGGAATCCAAATTCATACCACAGACGACTGTGCACCTTCTTTGATGGTGAAACAGTCACGAGGGGTCCGATTCCTTAATTAAAGGACTCCTGAAATTATTTTGTGTGTACCACTGAAATGGCATTAAGGATTAAGAACCTGTTGGAATCACTTTTTTCTATCTCCATTACTTTACTTCACTGCTTACTTTTATATGTCCATGACCTTCCTTCGCTTACATTTCCTTTTTTTCCTTCTATTTTGGTAAAATCATCTTTTCTGAATCTGTCAATCTTGGTAAAATCCTCATGACTTCCAAGAATACAATAGATTTACTGTGCGTAATTGACCTCATAAGCCTACTGCTATAAGCATAA

Coding sequence (CDS)

ATGGAGGAGAACGGAGGAAGCGACGGTGTTAGCAACGCCCACTGGTGGTGGGCTTTGGCCGGCGCAACACAGCTTGGTTGGGGTATCGCCTCTTTTCGGCGAGGATTGATCGGCAATTCCAGCCTCATGCCCTTAAAGGCCTTCGCCGTTGCTTCGCTTTTCGTCGGCGGCGGCGCCTCGTGTGCCATCGCTTCCCTCAAGGCCTCTGGCATCCACAAGGTTCACTTCACTTCACTTCACTTCACTTCACTTCTTTCACACTGCATTTACCAGTCGCGTTTCTTCATTTCTGGAATTAGGTTACACGTTAATTCGGTGGAAGACGTGATGGAAGTAGGGGCTAGTATTAGGAGTGGATTGGGGATTCGTCCAAGGCCACAAGATGAATGA

Protein sequence

MEENGGSDGVSNAHWWWALAGATQLGWGIASFRRGLIGNSSLMPLKAFAVASLFVGGGASCAIASLKASGIHKVHFTSLHFTSLLSHCIYQSRFFISGIRLHVNSVEDVMEVGASIRSGLGIRPRPQDE
BLAST of Cp4.1LG03g15780 vs. TrEMBL
Match: A0A0A0L700_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G118070 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 5.5e-32
Identity = 82/129 (63.57%), Postives = 84/129 (65.12%), Query Frame = 1

Query: 1   MEENGGSDGVSNAHWWWALAGATQLGWGIASFRRGLIGNSSLMPLKAFAVASLFVGGGAS 60
           MEENGGSD  SNAHWWWA AGA QLGWGIASFRRG IG+SS MPLKAFAVASLFVG  AS
Sbjct: 1   MEENGGSDAGSNAHWWWAFAGAAQLGWGIASFRRGFIGDSSNMPLKAFAVASLFVGAAAS 60

Query: 61  CAIASLKASGIHKVHFTSLHFTSLLSHCIYQSRFFISGIRLHVNSVEDVMEVGASIRSGL 120
             IASLKASGIHK                                VEDVMEVGA IRSGL
Sbjct: 61  STIASLKASGIHK--------------------------------VEDVMEVGARIRSGL 97

Query: 121 GIRPRPQDE 130
           GIR R QD+
Sbjct: 121 GIRSRAQDK 97

BLAST of Cp4.1LG03g15780 vs. TrEMBL
Match: F6GV86_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0021g02030 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 3.0e-22
Identity = 63/125 (50.40%), Postives = 74/125 (59.20%), Query Frame = 1

Query: 1   MEENGGSDGVSNAHWWWALAGATQLGWGIASFRRGLIGNSSLMPLKAFAVASLFVGGGAS 60
           MEENG   G   +HWWWALA A QLGWG+ S+RRG +G+SSLMP+KAF VASLFVG  AS
Sbjct: 1   MEENGHGSG-DGSHWWWALASAAQLGWGVFSYRRGGVGDSSLMPVKAFGVASLFVGAAAS 60

Query: 61  CAIASLKASGIHKVHFTSLHFTSLLSHCIYQSRFFISGIRLHVNSVEDVMEVGASIRSGL 120
            A   L ASGIHK                                VED+ E+GA+IR+GL
Sbjct: 61  AAFGVLHASGIHK--------------------------------VEDLKEMGANIRTGL 92

Query: 121 GIRPR 126
           G+RPR
Sbjct: 121 GVRPR 92

BLAST of Cp4.1LG03g15780 vs. TrEMBL
Match: A0A0B0PN24_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_12557 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 2.6e-21
Identity = 62/129 (48.06%), Postives = 77/129 (59.69%), Query Frame = 1

Query: 3   ENGGSDGVS--NAHWWWALAGATQLGWGIASFRRGLIGNSSLMPLKAFAVASLFVGGGAS 62
           ENGG +G    N+HW+WA+A  +QLGW ++S+R+G  G+   MPLKAFAVASLF+G  AS
Sbjct: 5   ENGGDNGKIHINSHWYWAIASVSQLGWAVSSYRKGYTGDHRFMPLKAFAVASLFLGASAS 64

Query: 63  CAIASLKASGIHKVHFTSLHFTSLLSHCIYQSRFFISGIRLHVNSVEDVMEVGASIRSGL 122
            ++A LKASGIHKV                                ED+M VGASIRSGL
Sbjct: 65  ASVAFLKASGIHKV--------------------------------EDLMGVGASIRSGL 101

Query: 123 GIRPRPQDE 130
           GIRPR  D+
Sbjct: 125 GIRPRTGDK 101

BLAST of Cp4.1LG03g15780 vs. TrEMBL
Match: A0A0D2QYT2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G039500 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 3.3e-21
Identity = 62/129 (48.06%), Postives = 77/129 (59.69%), Query Frame = 1

Query: 3   ENGGSDG--VSNAHWWWALAGATQLGWGIASFRRGLIGNSSLMPLKAFAVASLFVGGGAS 62
           ENGG +   + N+HW+WA+A  +QLGW ++S+RRG  G+   MPLKAFAVASLF+G  AS
Sbjct: 5   ENGGDNDKILINSHWYWAIASVSQLGWAVSSYRRGYTGDHRFMPLKAFAVASLFLGASAS 64

Query: 63  CAIASLKASGIHKVHFTSLHFTSLLSHCIYQSRFFISGIRLHVNSVEDVMEVGASIRSGL 122
            ++A LKASGIHKV                                ED+M VGASIRSGL
Sbjct: 65  ASVAFLKASGIHKV--------------------------------EDLMGVGASIRSGL 101

Query: 123 GIRPRPQDE 130
           GIRPR  D+
Sbjct: 125 GIRPRTGDK 101

BLAST of Cp4.1LG03g15780 vs. TrEMBL
Match: A0A061E2A0_THECC (StAR-related lipid transfer protein 9, putative OS=Theobroma cacao GN=TCM_005656 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 5.3e-19
Identity = 58/131 (44.27%), Postives = 74/131 (56.49%), Query Frame = 1

Query: 1   MEENGGSDGVSN--AHWWWALAGATQLGWGIASFRRGLIGNSSLMPLKAFAVASLFVGGG 60
           +EE+GG    +   +HW+WA A   Q GW ++S+R+G  G+  LMP KAFAVASLF+G  
Sbjct: 3   VEESGGDADRTRIESHWYWATASVAQFGWAVSSYRKGYAGDHRLMPFKAFAVASLFLGAS 62

Query: 61  ASCAIASLKASGIHKVHFTSLHFTSLLSHCIYQSRFFISGIRLHVNSVEDVMEVGASIRS 120
           AS +++ LKASGIHK                                VED+MEVGASIR+
Sbjct: 63  ASASVSFLKASGIHK--------------------------------VEDLMEVGASIRA 101

Query: 121 GLGIRPRPQDE 130
           GLG RPR  DE
Sbjct: 123 GLGTRPRAGDE 101

BLAST of Cp4.1LG03g15780 vs. TAIR10
Match: AT3G60480.1 (AT3G60480.1 unknown protein)

HSP 1 Score: 75.1 bits (183), Expect = 3.5e-14
Identity = 39/81 (48.15%), Postives = 48/81 (59.26%), Query Frame = 1

Query: 1  MEENGGSDGVSNA-------HWWWALAGATQLGWGIASFRRGLIGNSSLMPLKAFAVASL 60
          MEE     G   +       HWWWAL    Q+ WGI   RRG  G+  LMPLKAF VASL
Sbjct: 1  MEEQNAGTGAGESSLLDGSGHWWWALGSGAQIMWGIRLIRRGYAGDVRLMPLKAFGVASL 60

Query: 61 FVGGGASCAIASLKASGIHKV 75
          FVG  A+ ++A ++A+GIH V
Sbjct: 61 FVGSLATSSVALVRATGIHTV 81

BLAST of Cp4.1LG03g15780 vs. NCBI nr
Match: gi|659074821|ref|XP_008437814.1| (PREDICTED: uncharacterized protein LOC103483131 [Cucumis melo])

HSP 1 Score: 148.7 bits (374), Expect = 7.1e-33
Identity = 83/129 (64.34%), Postives = 86/129 (66.67%), Query Frame = 1

Query: 1   MEENGGSDGVSNAHWWWALAGATQLGWGIASFRRGLIGNSSLMPLKAFAVASLFVGGGAS 60
           MEENGGSDG SNAHWWWA AGA QLGWGIASFRRG +G+SS MPLKAFAVASLFVG  AS
Sbjct: 29  MEENGGSDGGSNAHWWWAFAGAGQLGWGIASFRRGFVGDSSTMPLKAFAVASLFVGAAAS 88

Query: 61  CAIASLKASGIHKVHFTSLHFTSLLSHCIYQSRFFISGIRLHVNSVEDVMEVGASIRSGL 120
            AIASLKASGIHK                                VEDVMEVGA IRSGL
Sbjct: 89  SAIASLKASGIHK--------------------------------VEDVMEVGARIRSGL 125

Query: 121 GIRPRPQDE 130
           GIR R QD+
Sbjct: 149 GIRSRAQDK 125

BLAST of Cp4.1LG03g15780 vs. NCBI nr
Match: gi|449431982|ref|XP_004133779.1| (PREDICTED: uncharacterized protein LOC101221895 [Cucumis sativus])

HSP 1 Score: 145.2 bits (365), Expect = 7.9e-32
Identity = 82/129 (63.57%), Postives = 84/129 (65.12%), Query Frame = 1

Query: 1   MEENGGSDGVSNAHWWWALAGATQLGWGIASFRRGLIGNSSLMPLKAFAVASLFVGGGAS 60
           MEENGGSD  SNAHWWWA AGA QLGWGIASFRRG IG+SS MPLKAFAVASLFVG  AS
Sbjct: 1   MEENGGSDAGSNAHWWWAFAGAAQLGWGIASFRRGFIGDSSNMPLKAFAVASLFVGAAAS 60

Query: 61  CAIASLKASGIHKVHFTSLHFTSLLSHCIYQSRFFISGIRLHVNSVEDVMEVGASIRSGL 120
             IASLKASGIHK                                VEDVMEVGA IRSGL
Sbjct: 61  STIASLKASGIHK--------------------------------VEDVMEVGARIRSGL 97

Query: 121 GIRPRPQDE 130
           GIR R QD+
Sbjct: 121 GIRSRAQDK 97

BLAST of Cp4.1LG03g15780 vs. NCBI nr
Match: gi|1009140453|ref|XP_015887660.1| (PREDICTED: uncharacterized protein LOC107422691 [Ziziphus jujuba])

HSP 1 Score: 115.9 bits (289), Expect = 5.1e-23
Identity = 65/127 (51.18%), Postives = 76/127 (59.84%), Query Frame = 1

Query: 3   ENGGSDGVSNAHWWWALAGATQLGWGIASFRRGLIGNSSLMPLKAFAVASLFVGGGASCA 62
           E GG  G S +HWWW +A A QLGWGI S RRG  G+S+LMP KAF VASLFVG  AS +
Sbjct: 14  EGGGGVG-SESHWWWGMASAAQLGWGIVSLRRGYTGHSNLMPFKAFTVASLFVGSAASAS 73

Query: 63  IASLKASGIHKVHFTSLHFTSLLSHCIYQSRFFISGIRLHVNSVEDVMEVGASIRSGLGI 122
           +ASL ASGIHK                                VED+MEVGA+IR+GLGI
Sbjct: 74  VASLHASGIHK--------------------------------VEDLMEVGANIRTGLGI 107

Query: 123 RPRPQDE 130
           RPR ++E
Sbjct: 134 RPRTREE 107

BLAST of Cp4.1LG03g15780 vs. NCBI nr
Match: gi|225453438|ref|XP_002275512.1| (PREDICTED: uncharacterized protein LOC100266789 [Vitis vinifera])

HSP 1 Score: 112.8 bits (281), Expect = 4.3e-22
Identity = 63/125 (50.40%), Postives = 74/125 (59.20%), Query Frame = 1

Query: 1   MEENGGSDGVSNAHWWWALAGATQLGWGIASFRRGLIGNSSLMPLKAFAVASLFVGGGAS 60
           MEENG   G   +HWWWALA A QLGWG+ S+RRG +G+SSLMP+KAF VASLFVG  AS
Sbjct: 1   MEENGHGSG-DGSHWWWALASAAQLGWGVFSYRRGGVGDSSLMPVKAFGVASLFVGAAAS 60

Query: 61  CAIASLKASGIHKVHFTSLHFTSLLSHCIYQSRFFISGIRLHVNSVEDVMEVGASIRSGL 120
            A   L ASGIHK                                VED+ E+GA+IR+GL
Sbjct: 61  AAFGVLHASGIHK--------------------------------VEDLKEMGANIRTGL 92

Query: 121 GIRPR 126
           G+RPR
Sbjct: 121 GVRPR 92

BLAST of Cp4.1LG03g15780 vs. NCBI nr
Match: gi|728848410|gb|KHG27853.1| (hypothetical protein F383_12557 [Gossypium arboreum])

HSP 1 Score: 109.8 bits (273), Expect = 3.7e-21
Identity = 62/129 (48.06%), Postives = 77/129 (59.69%), Query Frame = 1

Query: 3   ENGGSDGVS--NAHWWWALAGATQLGWGIASFRRGLIGNSSLMPLKAFAVASLFVGGGAS 62
           ENGG +G    N+HW+WA+A  +QLGW ++S+R+G  G+   MPLKAFAVASLF+G  AS
Sbjct: 5   ENGGDNGKIHINSHWYWAIASVSQLGWAVSSYRKGYTGDHRFMPLKAFAVASLFLGASAS 64

Query: 63  CAIASLKASGIHKVHFTSLHFTSLLSHCIYQSRFFISGIRLHVNSVEDVMEVGASIRSGL 122
            ++A LKASGIHKV                                ED+M VGASIRSGL
Sbjct: 65  ASVAFLKASGIHKV--------------------------------EDLMGVGASIRSGL 101

Query: 123 GIRPRPQDE 130
           GIRPR  D+
Sbjct: 125 GIRPRTGDK 101

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L700_CUCSA5.5e-3263.57Uncharacterized protein OS=Cucumis sativus GN=Csa_3G118070 PE=4 SV=1[more]
F6GV86_VITVI3.0e-2250.40Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0021g02030 PE=4 SV=... [more]
A0A0B0PN24_GOSAR2.6e-2148.06Uncharacterized protein OS=Gossypium arboreum GN=F383_12557 PE=4 SV=1[more]
A0A0D2QYT2_GOSRA3.3e-2148.06Uncharacterized protein OS=Gossypium raimondii GN=B456_004G039500 PE=4 SV=1[more]
A0A061E2A0_THECC5.3e-1944.27StAR-related lipid transfer protein 9, putative OS=Theobroma cacao GN=TCM_005656... [more]
Match NameE-valueIdentityDescription
AT3G60480.13.5e-1448.15 unknown protein[more]
Match NameE-valueIdentityDescription
gi|659074821|ref|XP_008437814.1|7.1e-3364.34PREDICTED: uncharacterized protein LOC103483131 [Cucumis melo][more]
gi|449431982|ref|XP_004133779.1|7.9e-3263.57PREDICTED: uncharacterized protein LOC101221895 [Cucumis sativus][more]
gi|1009140453|ref|XP_015887660.1|5.1e-2351.18PREDICTED: uncharacterized protein LOC107422691 [Ziziphus jujuba][more]
gi|225453438|ref|XP_002275512.1|4.3e-2250.40PREDICTED: uncharacterized protein LOC100266789 [Vitis vinifera][more]
gi|728848410|gb|KHG27853.1|3.7e-2148.06hypothetical protein F383_12557 [Gossypium arboreum][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG03g15780.1Cp4.1LG03g15780.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37744FAMILY NOT NAMEDcoord: 1..72
score: 9.3E-26coord: 105..129
score: 9.3

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG03g15780Cp4.1LG08g00520Cucurbita pepo (Zucchini)cpecpeB482