Cla97C05G080360 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C05G080360
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	StAR-related lipid transfer protein 9, putative
Location	Cla97Chr05 : 495302 .. 497256 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGAGAACGGAGGAAGCGACGGTGGTAGCAACGCCCACTGGTGGTGGGCTTCGGCCGGTGCAACGCAGTTCGGTTGGGGTGTCGCTTCTTTCCGGCGAGGATTTATCGGCGATTCCAGATTCATGCCCCTTAAGGCCTTCGCCGTTGCTTCGCTTTTCGTCGGCGCCGCCGCCTCGTCCGCCATCGCTTCTCTCAAGGCCTCTGGCATCCACAAGGTTCTCTTCACTTCTCTTCTACTCTGTTTCTACCAGTCGCATTCCTTCTTCCTTCCTCTCCCCCATTCTGGATTAGGTTAGAGGTTAATTGGGCGACTTCGATTAATCTGGTTTTGTATTCGTATTGGCCTTTGCAGAATTAACTGTACAAACCATATCTGATTCGTCAGTATGCTATGAATTTAGCTAAGTTTCAGGAGAAATGCAATTCTTAGTTTTTGGCAGCTTAGTTAGCATAGCTAGTTAATGTTTAATTTGAACTCCCAATTTTGTTGAATTGAATACTGAAATGGAGCAGTGGATGGAAAAATATTTCTATGGGTATTAGTATCTTAGGTCGTGTTAGATTATTTGTTGTTGACATTAGTCATGTTGTTGTTTATCTTGAACAGTTTTTTCACCTGGCTTGATGTTGTGGTTAAGTTCGAGAGTCTTCTAATCTGAGTTGAATTTAGGTATTTTTTTTCCATGATTTTTGTTGGAAAAATCGTCACCTTGCACTTTTCATAATATAGATGGGTTATTCCTCTCATCGCCAATTAGTTTTGAGATGGAATCCATGTTATCTAATAATTTTGAGTGGTTCATTTGTGCATAATTTTTTACATATGACTTTCTGGTGTTATCCACTTGTTTAGATTAAGAGGTTTATGGTGTGGGATGAAATTGAAAGTTGCAATATTATAAACTTTCATAAAGGTTGTTTCAAAGAAAATCGACGTGAAATGATCGGGTGGTGAATAGAACTCCAGCCTGAATTAAGTCTAAGAGAACGACATTCAGGTATAGACTTTTTTGTCCAAAATCTTAATGGGTTTATCAACTCTAAGGACAATTTTGAAAACTTTATAAAAGGTCAAAAGATAATATTGCAACGTTTTGAAAGAATAAGAGCATGTTTTAATAAAAGATGAAATTCAGGAGTATTTTTTAAAATTTAGCCTAAATATTGGTACACTTGGAAACGACATACAAGTTGAAGAGGCTCCCCATATGGTAAAGGTTTGAGACTGTGGGTGAGAATTTAACCCTTGTTCCTTGTCTTTCCATAAAAAGTGGTGTCAAACTCAATTCTGACACCACGAAATATATAGTTAGATTTACATCATTGTGTTGAAGCCAAATGTTAGCTCAATGCAAAAGTAACAGCTGAAGTTTTTGGTTAATACGAAATCGAAGATTATCCAATGTTTAGGAGTATGAAAGGTCTGTATTTGTTTTCTTCTATGCCCTAGCTTCACTGTAATTGGTGTGTGACAGAGCAGGAGTAATTTTGGACGTATTAAGAGGGATGCCATTCCGTATAGGTAAGCCTCCATGATCAACAAGGAGGCAGGTAGCATTCATGGTTATGACAGGCTTGTGGTATAAAGATAGGATCTTGATGTCATCATTCTGAACTTAAAAGAACTTCGGTGATCAGAAATTGTTCTTTTTTGCTTGTTGCTCTAATGGATCAACAAATGAAGCCATTGTTTGTCATTTCTTACAAAATCATGGTTTTGTAAAAGTGATTTCAATAGACACAGAACTTCTTAGAAAGCGGTTTGATCTTGACGAAAGAGGACACATCTAGAAAGGAAAATTTCTAGATCTAGAAATAGCTTGCTGAAATGAAGGGTTTGATTACTAAATTTTGGTTTTGGGGTGTATTGGAACAGGTGGAAGACATGATGGAAGTAGGAGCGAGTATCAGGAATGGATTGGGGATTCGTCCAAGGGCACAAGATGAATGA

mRNA sequence

ATGGAGGAGAACGGAGGAAGCGACGGTGGTAGCAACGCCCACTGGTGGTGGGCTTCGGCCGGTGCAACGCAGTTCGGTTGGGGTGTCGCTTCTTTCCGGCGAGGATTTATCGGCGATTCCAGATTCATGCCCCTTAAGGCCTTCGCCGTTGCTTCGCTTTTCGTCGGCGCCGCCGCCTCGTCCGCCATCGCTTCTCTCAAGGCCTCTGGCATCCACAAGGTGGAAGACATGATGGAAGTAGGAGCGAGTATCAGGAATGGATTGGGGATTCGTCCAAGGGCACAAGATGAATGA

Coding sequence (CDS)

ATGGAGGAGAACGGAGGAAGCGACGGTGGTAGCAACGCCCACTGGTGGTGGGCTTCGGCCGGTGCAACGCAGTTCGGTTGGGGTGTCGCTTCTTTCCGGCGAGGATTTATCGGCGATTCCAGATTCATGCCCCTTAAGGCCTTCGCCGTTGCTTCGCTTTTCGTCGGCGCCGCCGCCTCGTCCGCCATCGCTTCTCTCAAGGCCTCTGGCATCCACAAGGTGGAAGACATGATGGAAGTAGGAGCGAGTATCAGGAATGGATTGGGGATTCGTCCAAGGGCACAAGATGAATGA

Protein sequence

MEENGGSDGGSNAHWWWASAGATQFGWGVASFRRGFIGDSRFMPLKAFAVASLFVGAAASSAIASLKASGIHKVEDMMEVGASIRNGLGIRPRAQDE

Homology

[Close]

BLAST of Cla97C05G080360 vs. NCBI nr
Match: XP_022145350.1 (uncharacterized protein LOC111014824 [Momordica charantia])

HSP 1 Score: 139.0 bits (349), Expect = 8.3e-30
Identity = 74/97 (76.29%), Postives = 82/97 (84.54%), Query Frame = 0


Query: 1  MEENGGSXXXXXXXXXXASAGATQFGWGVASFRRGFIGDSRFMPLKAFAVASLFVGAAAS 60
          ME+NGG           A AGATQFGWG+ASFRRGFIG+S  MP KAFAVASLFVGAAAS
Sbjct: 1  MEDNGGD-GGSNAHWWWALAGATQFGWGIASFRRGFIGNSSLMPFKAFAVASLFVGAAAS 60

Query: 61 SAIASLKASGIHKVEDMMEVGASIRNGLGIRPRAQDE 98
          SAIASLKASGIHKVED+ME+GASIR+GLG+RPRA+DE
Sbjct: 61 SAIASLKASGIHKVEDVMEIGASIRSGLGVRPRARDE 96

[Close]

BLAST of Cla97C05G080360 vs. NCBI nr
Match: XP_022941577.1 (uncharacterized protein LOC111446882 isoform X2 [Cucurbita moschata])

HSP 1 Score: 139.0 bits (349), Expect = 8.3e-30
Identity = 74/97 (76.29%), Postives = 79/97 (81.44%), Query Frame = 0


Query: 1   MEENGGSXXXXXXXXXXASAGATQFGWGVASFRRGFIGDSRFMPLKAFAVASLFVGAAAS 60
           M ENGGS          A AGATQFGWG+ASFRRG IGDS  MP KAFAVASLFVGAAAS
Sbjct: 28  MVENGGSDGGSNAHWWWALAGATQFGWGIASFRRGVIGDSSLMPFKAFAVASLFVGAAAS 87

Query: 61  SAIASLKASGIHKVEDMMEVGASIRNGLGIRPRAQDE 98
           SAIASLKA+GIHKVED+MEVGA+IR GLGIRPR +DE
Sbjct: 88  SAIASLKAAGIHKVEDVMEVGANIRTGLGIRPRTRDE 124

[Close]

BLAST of Cla97C05G080360 vs. NCBI nr
Match: XP_023540026.1 (uncharacterized protein LOC111800524 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 138.7 bits (348), Expect = 1.1e-29
Identity = 73/97 (75.26%), Postives = 79/97 (81.44%), Query Frame = 0


Query: 1   MEENGGSXXXXXXXXXXASAGATQFGWGVASFRRGFIGDSRFMPLKAFAVASLFVGAAAS 60
           M ENGGS          A AGATQFGWG+ASFRRG IGDS  MP KAFAVASLFVGAAAS
Sbjct: 6   MVENGGSDGGSNAHWWWALAGATQFGWGIASFRRGVIGDSSLMPFKAFAVASLFVGAAAS 65

Query: 61  SAIASLKASGIHKVEDMMEVGASIRNGLGIRPRAQDE 98
           SAIASLKA+GIHKVED+MEVGA+IR GLG+RPR +DE
Sbjct: 66  SAIASLKAAGIHKVEDVMEVGANIRTGLGVRPRTRDE 102

[Close]

BLAST of Cla97C05G080360 vs. NCBI nr
Match: XP_004133779.1 (PREDICTED: uncharacterized protein LOC101221895 [Cucumis sativus] >KGN56372.1 hypothetical protein Csa_3G118070 [Cucumis sativus])

HSP 1 Score: 138.3 bits (347), Expect = 1.4e-29
Identity = 75/97 (77.32%), Postives = 79/97 (81.44%), Query Frame = 0


Query: 1  MEENGGSXXXXXXXXXXASAGATQFGWGVASFRRGFIGDSRFMPLKAFAVASLFVGAAAS 60
          MEENGGS          A AGA Q GWG+ASFRRGFIGDS  MPLKAFAVASLFVGAAAS
Sbjct: 1  MEENGGSDAGSNAHWWWAFAGAAQLGWGIASFRRGFIGDSSNMPLKAFAVASLFVGAAAS 60

Query: 61 SAIASLKASGIHKVEDMMEVGASIRNGLGIRPRAQDE 98
          S IASLKASGIHKVED+MEVGA IR+GLGIR RAQD+
Sbjct: 61 STIASLKASGIHKVEDVMEVGARIRSGLGIRSRAQDK 97

[Close]

BLAST of Cla97C05G080360 vs. NCBI nr
Match: XP_023526462.1 (uncharacterized protein LOC111789953 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 138.3 bits (347), Expect = 1.4e-29
Identity = 74/97 (76.29%), Postives = 78/97 (80.41%), Query Frame = 0


Query: 1   MEENGGSXXXXXXXXXXASAGATQFGWGVASFRRGFIGDSRFMPLKAFAVASLFVGAAAS 60
           MEENGGS          A AGATQ GWG+ASFRRG IG+S  MPLKAFAVASLFVG  AS
Sbjct: 14  MEENGGSDGVSNAHWWWALAGATQLGWGIASFRRGLIGNSSLMPLKAFAVASLFVGGGAS 73

Query: 61  SAIASLKASGIHKVEDMMEVGASIRNGLGIRPRAQDE 98
            AIASLKASGIHKVED+MEVGASIR+GLGIRPR QDE
Sbjct: 74  CAIASLKASGIHKVEDVMEVGASIRSGLGIRPRPQDE 110

[Close]

BLAST of Cla97C05G080360 vs. TrEMBL
Match: tr|A0A0A0L700|A0A0A0L700_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G118070 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 9.3e-30
Identity = 75/97 (77.32%), Postives = 79/97 (81.44%), Query Frame = 0


Query: 1  MEENGGSXXXXXXXXXXASAGATQFGWGVASFRRGFIGDSRFMPLKAFAVASLFVGAAAS 60
          MEENGGS          A AGA Q GWG+ASFRRGFIGDS  MPLKAFAVASLFVGAAAS
Sbjct: 1  MEENGGSDAGSNAHWWWAFAGAAQLGWGIASFRRGFIGDSSNMPLKAFAVASLFVGAAAS 60

Query: 61 SAIASLKASGIHKVEDMMEVGASIRNGLGIRPRAQDE 98
          S IASLKASGIHKVED+MEVGA IR+GLGIR RAQD+
Sbjct: 61 STIASLKASGIHKVEDVMEVGARIRSGLGIRSRAQDK 97

[Close]

BLAST of Cla97C05G080360 vs. TrEMBL
Match: tr|A0A1S3AUW2|A0A1S3AUW2_CUCME (uncharacterized protein LOC103483131 OS=Cucumis melo OX=3656 GN=LOC103483131 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 5.7e-27
Identity = 68/80 (85.00%), Postives = 73/80 (91.25%), Query Frame = 0


Query: 18  ASAGATQFGWGVASFRRGFIGDSRFMPLKAFAVASLFVGAAASSAIASLKASGIHKVEDM 77
           A AGA Q GWG+ASFRRGF+GDS  MPLKAFAVASLFVGAAASSAIASLKASGIHKVED+
Sbjct: 46  AFAGAGQLGWGIASFRRGFVGDSSTMPLKAFAVASLFVGAAASSAIASLKASGIHKVEDV 105

Query: 78  MEVGASIRNGLGIRPRAQDE 98
           MEVGA IR+GLGIR RAQD+
Sbjct: 106 MEVGARIRSGLGIRSRAQDK 125

[Close]

BLAST of Cla97C05G080360 vs. TrEMBL
Match: tr|A0A2P5DAB7|A0A2P5DAB7_9ROSA (StAR lipid transfer-like protein OS=Trema orientalis OX=63057 GN=TorRG33x02_257720 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.2e-23
Identity = 59/79 (74.68%), Postives = 68/79 (86.08%), Query Frame = 0


Query: 19  SAGATQFGWGVASFRRGFIGDSRFMPLKAFAVASLFVGAAASSAIASLKASGIHKVEDMM 78
           +A A Q GWG+ASFRRG+ G S  MPLKAFAVASLFVGAAAS++ A+L ASGIHKVEDMM
Sbjct: 41  AASAGQLGWGIASFRRGYAGHSNLMPLKAFAVASLFVGAAASASFAALHASGIHKVEDMM 100

Query: 79  EVGASIRNGLGIRPRAQDE 98
           EVGA++R GLGIRPR +DE
Sbjct: 101 EVGANMRTGLGIRPRTRDE 119

[Close]

BLAST of Cla97C05G080360 vs. TrEMBL
Match: tr|A0A2I4HDZ6|A0A2I4HDZ6_9ROSI (uncharacterized protein LOC109016350 OS=Juglans regia OX=51240 GN=LOC109016350 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 6.5e-23
Identity = 59/80 (73.75%), Postives = 69/80 (86.25%), Query Frame = 0


Query: 18 ASAGATQFGWGVASFRRGFIGDSRFMPLKAFAVASLFVGAAASSAIASLKASGIHKVEDM 77
          A A   Q G GV+S+RRG+ GDSR MPLKAF VASLFVGAAAS+A++ LKASGIHKVED+
Sbjct: 18 ALASGAQLGLGVSSYRRGYAGDSRLMPLKAFVVASLFVGAAASTAVSVLKASGIHKVEDL 77

Query: 78 MEVGASIRNGLGIRPRAQDE 98
          MEVGA+IR GLG+RPRA+DE
Sbjct: 78 MEVGANIRAGLGVRPRARDE 97

[Close]

BLAST of Cla97C05G080360 vs. TrEMBL
Match: tr|A0A2P5CIM2|A0A2P5CIM2_PARAD (StAR lipid transfer-like protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_150190 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.1e-22
Identity = 60/79 (75.95%), Postives = 68/79 (86.08%), Query Frame = 0


Query: 19  SAGATQFGWGVASFRRGFIGDSRFMPLKAFAVASLFVGAAASSAIASLKASGIHKVEDMM 78
           +A A Q G G+ASFRRG+ G S  MPLKAFAVASLFVGAAAS++ A+L ASGIHKVEDMM
Sbjct: 33  AASAGQLGLGIASFRRGYAGHSNLMPLKAFAVASLFVGAAASASFAALHASGIHKVEDMM 92

Query: 79  EVGASIRNGLGIRPRAQDE 98
           EVGA+IR GLGIRPRA+DE
Sbjct: 93  EVGANIRTGLGIRPRARDE 111

[Close]

BLAST of Cla97C05G080360 vs. TAIR10
Match: AT3G60480.1 (unknown protein)

HSP 1 Score: 84.0 bits (206), Expect = 5.7e-17
Identity = 40/80 (50.00%), Postives = 57/80 (71.25%), Query Frame = 0


Query: 18  ASAGATQFGWGVASFRRGFIGDSRFMPLKAFAVASLFVGAAASSAIASLKASGIHKVEDM 77
           A     Q  WG+   RRG+ GD R MPLKAF VASLFVG+ A+S++A ++A+GIH V+D 
Sbjct: 25  ALGSGAQIMWGIRLIRRGYAGDVRLMPLKAFGVASLFVGSLATSSVALVRATGIHTVQDA 84

Query: 78  MEVGASIRNGLGIRPRAQDE 98
           +++GA+IR  LG+ P+  D+
Sbjct: 85  IDLGANIRTNLGVTPQIPDK 104

The following BLAST results are available for this feature:

BLAST of Cla97C05G080360 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022145350.1	8.3e-30	76.29	uncharacterized protein LOC111014824 [Momordica charantia]	[more]
XP_022941577.1	8.3e-30	76.29	uncharacterized protein LOC111446882 isoform X2 [Cucurbita moschata]	[more]
XP_023540026.1	1.1e-29	75.26	uncharacterized protein LOC111800524 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_004133779.1	1.4e-29	77.32	PREDICTED: uncharacterized protein LOC101221895 [Cucumis sativus] >KGN56372.1 hy...	[more]
XP_023526462.1	1.4e-29	76.29	uncharacterized protein LOC111789953 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Cla97C05G080360 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L700\|A0A0A0L700_CUCSA	9.3e-30	77.32	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G118070 PE=4 SV=1	[more]
tr\|A0A1S3AUW2\|A0A1S3AUW2_CUCME	5.7e-27	85.00	uncharacterized protein LOC103483131 OS=Cucumis melo OX=3656 GN=LOC103483131 PE=...	[more]
tr\|A0A2P5DAB7\|A0A2P5DAB7_9ROSA	2.2e-23	74.68	StAR lipid transfer-like protein OS=Trema orientalis OX=63057 GN=TorRG33x02_2577...	[more]
tr\|A0A2I4HDZ6\|A0A2I4HDZ6_9ROSI	6.5e-23	73.75	uncharacterized protein LOC109016350 OS=Juglans regia OX=51240 GN=LOC109016350 P...	[more]
tr\|A0A2P5CIM2\|A0A2P5CIM2_PARAD	1.1e-22	75.95	StAR lipid transfer-like protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_...	[more]

BLAST of Cla97C05G080360 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C05G080360 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G60480.1	5.7e-17	50.00	unknown protein	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C05G080360.1	Cla97C05G080360.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37744	FAMILY NOT NAMED	coord: 1..96

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C05G080360	Cla021106	Watermelon (97103) v1	wmwmbB206
Cla97C05G080360	Csa3G118070	Cucumber (Chinese Long) v2	cuwmbB204
Cla97C05G080360	MELO3C005977	Melon (DHL92) v3.5.1	mewmbB434
Cla97C05G080360	ClCG05G000390	Watermelon (Charleston Gray)	wcgwmbB229
Cla97C05G080360	CSPI03G07420	Wild cucumber (PI 183967)	cpiwmbB209
Cla97C05G080360	Cucsa.259720	Cucumber (Gy14) v1	cgywmbB452
Cla97C05G080360	CmaCh06G010020	Cucurbita maxima (Rimu)	cmawmbB862
Cla97C05G080360	CmaCh00G005200	Cucurbita maxima (Rimu)	cmawmbB007
Cla97C05G080360	CmoCh14G022140	Cucurbita moschata (Rifu)	cmowmbB243
Cla97C05G080360	CmoCh06G010030	Cucurbita moschata (Rifu)	cmowmbB833
Cla97C05G080360	CsGy3G007550	Cucumber (Gy14) v2	cgybwmbB196
Cla97C05G080360	MELO3C005977.2	Melon (DHL92) v3.6.1	medwmbB423
Cla97C05G080360	Carg24159	Silver-seed gourd	carwmbB0098
Cla97C05G080360	Carg17668	Silver-seed gourd	carwmbB0138
Cla97C05G080360	CsaV3_3G007550	Cucumber (Chinese Long) v3	cucwmbB206
Cla97C05G080360	Bhi01G000411	Wax gourd	wgowmbB191

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C05G080360	Silver-seed gourd	carwmbB1047
Cla97C05G080360	Cucurbita maxima (Rimu)	cmawmbB263
Cla97C05G080360	Cucurbita maxima (Rimu)	cmawmbB857
Cla97C05G080360	Bottle gourd (USVL1VR-Ls)	lsiwmbB333