MELO3C004751 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C004751
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Histidine-containing phosphotransfer protein, putative
Location	chr12 : 10944168 .. 10945302 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACCGCTAAGACTTTGTGATTTCCTGAAACCAAAAACTCCGAAGAAAAATCCATCGTTCCAAAGAAAACTCTTCTCCCAATGTCTGCCGCCGCCTCTTCCTCTTCCTCTCACCCACAACCCCCTCGTTCTCAGCAACAAATGATCCACAAATTCATCGATGCTTTGCGCCAACAAGTGAATAATCATCTTCTTCACTCTGTTTTTTCGATTTTTTCTATTTTCTTGACTTCTGATTCGTTCCTTCTAGGGATTTCTTGATAATGACTTCAATAACCGGAGAACTGCTCCTGGGCATCTAGATTCCTTGGTAACATTCTGCGTTGAGTCCGAACCTAAGCTCGAAATCATTCAGAAAGCTCTGTAATGTTTCAAAAACCCTAACATAGTTCCATTTTTTATTTAATTTAATTACTTTGTTCTTTCTATTTTTCTTGTTCTGAATCGTTTTGGTTGTTTTAGGGAAGGTGAGCATGTGGATTTTCGTACTGCGATTAACACCTCAGAAATGATCAGATCTGCCGCTACAAGGTAATTCCAATCAATTCGATTTCAAATTTTTGTTTCCGTTTCGTTTTTAAAGTGAATTTAAGGATAATTGGAAGGGTTTTGTTTATGATTATGATCTTATCGAACAGAGTCGGTGGAAGTCGGGTAGCAAGTGCTTGTATTGCATTACAAGAGCATTTGAATAACAATAACCTTAATGGGTAATCAACTGTGTTAATTAGTTTAATTATTTATTTAAAACAATTTGGTGATGATTAATCTTTAATCTCATTATTATTTTTACTTGTTCTTTGTCAGTTCAAAAGAAGCTTACAAGAAACTCTCCTGGGAATACTATGTCATACGTGATTCTTTCCACCACATTCTTCAAGTAATGTTATTTCTCCATTTTTTCTTCATTATAAATGATTTCTTGAAATTTTACAAAGATATTAATGTATTTCTTTTTTGGTTTTTGTGATTTAACAGGCTGAGAAAACAGTGGAGGTTTAAGAAGGATGAAGCAAGATTTGGTGAAAAATAAAGAGCTTGTTTAGTTAGTTTCATTTTTTTTGTTTGTAATATTTTTTTCTAAACAAGCTTGTTTGGACGAACATATATACTCTACAACAATACTAATAGAATTGCC

mRNA sequence

ACCGCTAAGACTTTGTGATTTCCTGAAACCAAAAACTCCGAAGAAAAATCCATCGTTCCAAAGAAAACTCTTCTCCCAATGTCTGCCGCCGCCTCTTCCTCTTCCTCTCACCCACAACCCCCTCGTTCTCAGCAACAAATGATCCACAAATTCATCGATGCTTTGCGCCAACAAGGATTTCTTGATAATGACTTCAATAACCGGAGAACTGCTCCTGGGCATCTAGATTCCTTGGTAACATTCTGCGTTGAGTCCGAACCTAAGCTCGAAATCATTCAGAAAGCTCTGGAAGGTGAGCATGTGGATTTTCGTACTGCGATTAACACCTCAGAAATGATCAGATCTGCCGCTACAAGAGTCGGTGGAAGTCGGGTAGCAAGTGCTTGTATTGCATTACAAGAGCATTTGAATAACAATAACCTTAATGGTTCAAAAGAAGCTTACAAGAAACTCTCCTGGGAATACTATGTCATACGTGATTCTTTCCACCACATTCTTCAAGCTGAGAAAACAGTGGAGGTTTAAGAAGGATGAAGCAAGATTTGGTGAAAAATAAAGAGCTTGTTTAGTTAGTTTCATTTTTTTTGTTTGTAATATTTTTTTCTAAACAAGCTTGTTTGGACGAACATATATACTCTACAACAATACTAATAGAATTGCC

Coding sequence (CDS)

ATGTCTGCCGCCGCCTCTTCCTCTTCCTCTCACCCACAACCCCCTCGTTCTCAGCAACAAATGATCCACAAATTCATCGATGCTTTGCGCCAACAAGGATTTCTTGATAATGACTTCAATAACCGGAGAACTGCTCCTGGGCATCTAGATTCCTTGGTAACATTCTGCGTTGAGTCCGAACCTAAGCTCGAAATCATTCAGAAAGCTCTGGAAGGTGAGCATGTGGATTTTCGTACTGCGATTAACACCTCAGAAATGATCAGATCTGCCGCTACAAGAGTCGGTGGAAGTCGGGTAGCAAGTGCTTGTATTGCATTACAAGAGCATTTGAATAACAATAACCTTAATGGTTCAAAAGAAGCTTACAAGAAACTCTCCTGGGAATACTATGTCATACGTGATTCTTTCCACCACATTCTTCAAGCTGAGAAAACAGTGGAGGTTTAA

Protein sequence

MSAAASSSSSHPQPPRSQQQMIHKFIDALRQQGFLDNDFNNRRTAPGHLDSLVTFCVESEPKLEIIQKALEGEHVDFRTAINTSEMIRSAATRVGGSRVASACIALQEHLNNNNLNGSKEAYKKLSWEYYVIRDSFHHILQAEKTVEV*

Homology

[Close]

BLAST of MELO3C004751 vs. TrEMBL
Match: A0A0A0LVC3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G153540 PE=4 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 1.1e-73
Identity = 140/148 (94.59%), Postives = 146/148 (98.65%), Query Frame = 1


Query: 1   MSAAASSSSSHPQPPRSQQQMIHKFIDALRQQGFLDNDFNNRRTAPGHLDSLVTFCVESE 60
           MSAAASSSSSH QPPRSQQQMIHKFIDALRQQGFLD+DFNNRRTAPGHLDSLVTFCVESE
Sbjct: 1   MSAAASSSSSHSQPPRSQQQMIHKFIDALRQQGFLDDDFNNRRTAPGHLDSLVTFCVESE 60

Query: 61  PKLEIIQKALEGEHVDFRTAINTSEMIRSAATRVGGSRVASACIALQEHLNNNNLNGSKE 120
           PKLEIIQK+LEGEH+DFRTAI+T+EMIRSAA RVGGSRVASACIALQEHLNNNNLNGSKE
Sbjct: 61  PKLEIIQKSLEGEHLDFRTAISTAEMIRSAAARVGGSRVASACIALQEHLNNNNLNGSKE 120

Query: 121 AYKKLSWEYYVIRDSFHHILQAEKTVEV 149
           AYKKLSWEYYVIRDSFHH+LQAEKTVEV
Sbjct: 121 AYKKLSWEYYVIRDSFHHMLQAEKTVEV 148

[Close]

BLAST of MELO3C004751 vs. TrEMBL
Match: U5GFZ5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s19690g PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 4.1e-07
Identity = 35/127 (27.56%), Postives = 67/127 (52.76%), Query Frame = 1


Query: 25  FIDALRQQGFLDNDFNNRRTAPGH-----LDSLVTFCVESEPKLEIIQKALEGEHVDFRT 84
           F+ +L +QG LD+ F+     P       +D + TFC ++E  +  + + L    +++  
Sbjct: 13  FVKSLHEQGILDSHFDEILDLPRESPQFVIDLVSTFCSDAENAIAALIRYLNEPDINYSR 72

Query: 85  AINTSEMIRSAATRVGGSRVASACIALQEHLNNNNLNGSKEAYKKLSWEYYVIRDSFHHI 144
            I+    IR A++ +GG R+A AC  L+    + + +    A+ K   EY ++++ F+ I
Sbjct: 73  VIDQVHQIRGASSCIGGHRMALACRELRYACEDKDKDRCLAAFGKTKDEYQILKEKFNII 132

Query: 145 LQAEKTV 147
           LQ E+T+
Sbjct: 133 LQMERTM 139

[Close]

BLAST of MELO3C004751 vs. TrEMBL
Match: A0A061GZR7_THECC (Histidine-containing phosphotransfer protein, putative OS=Theobroma cacao GN=TCM_041473 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.1e-06
Identity = 33/133 (24.81%), Postives = 66/133 (49.62%), Query Frame = 1


Query: 20  QMIHKFIDALRQQGFLDNDFNNRRTAPGH------LDSLVTFCVESEPKLEIIQKALEGE 79
           Q +  +I ++  QG LD+ F++ +           ++ +  FC ++E  +  I + L   
Sbjct: 8   QELKNYIQSMHDQGVLDHHFDHVKALQNEENPQFVMEVISMFCQDAEIGVAEITRFLNAP 67

Query: 80  HVDFRTAINTSEMIRSAATRVGGSRVASACIALQEHLNNNNLNGSKEAYKKLSWEYYVIR 139
            VDF   IN    ++ +++ +GG R+A AC  L++   N +     E ++++  EY  +R
Sbjct: 68  VVDFAKVINFVHQLKGSSSSIGGQRMALACRELRQASENRDKERCLEIFERMKQEYNTLR 127

Query: 140 DSFHHILQAEKTV 147
              + I Q E+T+
Sbjct: 128 GCLNAISQMERTI 140

[Close]

BLAST of MELO3C004751 vs. TAIR10
Match: AT5G39340.1 (AT5G39340.1 histidine-containing phosphotransmitter 3)

HSP 1 Score: 47.4 bits (111), Expect = 9.1e-06
Identity = 31/135 (22.96%), Postives = 62/135 (45.93%), Query Frame = 1


Query: 19  QQMIHKFIDALRQQGFLDNDFNNRRT-----APGHLDSLVT-FCVESEPKLEIIQKALEG 78
           Q+    F  +L  QGFLD+ F   +      +P  +  +VT F  + E  +  + +AL+ 
Sbjct: 9   QRRFCDFTISLYHQGFLDDQFTELKKLQDECSPDFVAEVVTLFFEDCEKLISNMARALDQ 68

Query: 79  E-HVDFRTAINTSEMIRSAATRVGGSRVASACIALQEHLNNNNLNGSKEAYKKLSWEYYV 138
             +VDF+   ++   ++ +++ VG  RV   C+ L+E  ++ N  G     +++  EY  
Sbjct: 69  TGNVDFKLVGSSVHQLKGSSSSVGAKRVKGLCVTLKECCDSQNYEGCVRCLQQVDIEYKT 128

Query: 139 IRDSFHHILQAEKTV 147
           ++     +   E+ +
Sbjct: 129 LKAKLQDLFNLEQQI 143

[Close]

BLAST of MELO3C004751 vs. NCBI nr
Match: gi|659071740|ref|XP_008461693.1| (PREDICTED: histidine-containing phosphotransfer protein 5-like [Cucumis melo])

HSP 1 Score: 297.4 bits (760), Expect = 1.4e-77
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 1


Query: 1   MSAAASSSSSHPQPPRSQQQMIHKFIDALRQQGFLDNDFNNRRTAPGHLDSLVTFCVESE 60
           MSAAASSSSSHPQPPRSQQQMIHKFIDALRQQGFLDNDFNNRRTAPGHLDSLVTFCVESE
Sbjct: 1   MSAAASSSSSHPQPPRSQQQMIHKFIDALRQQGFLDNDFNNRRTAPGHLDSLVTFCVESE 60

Query: 61  PKLEIIQKALEGEHVDFRTAINTSEMIRSAATRVGGSRVASACIALQEHLNNNNLNGSKE 120
           PKLEIIQKALEGEHVDFRTAINTSEMIRSAATRVGGSRVASACIALQEHLNNNNLNGSKE
Sbjct: 61  PKLEIIQKALEGEHVDFRTAINTSEMIRSAATRVGGSRVASACIALQEHLNNNNLNGSKE 120

Query: 121 AYKKLSWEYYVIRDSFHHILQAEKTVEV 149
           AYKKLSWEYYVIRDSFHHILQAEKTVEV
Sbjct: 121 AYKKLSWEYYVIRDSFHHILQAEKTVEV 148

[Close]

BLAST of MELO3C004751 vs. NCBI nr
Match: gi|700209813|gb|KGN64909.1| (hypothetical protein Csa_1G153540 [Cucumis sativus])

HSP 1 Score: 283.9 bits (725), Expect = 1.6e-73
Identity = 140/148 (94.59%), Postives = 146/148 (98.65%), Query Frame = 1


Query: 1   MSAAASSSSSHPQPPRSQQQMIHKFIDALRQQGFLDNDFNNRRTAPGHLDSLVTFCVESE 60
           MSAAASSSSSH QPPRSQQQMIHKFIDALRQQGFLD+DFNNRRTAPGHLDSLVTFCVESE
Sbjct: 1   MSAAASSSSSHSQPPRSQQQMIHKFIDALRQQGFLDDDFNNRRTAPGHLDSLVTFCVESE 60

Query: 61  PKLEIIQKALEGEHVDFRTAINTSEMIRSAATRVGGSRVASACIALQEHLNNNNLNGSKE 120
           PKLEIIQK+LEGEH+DFRTAI+T+EMIRSAA RVGGSRVASACIALQEHLNNNNLNGSKE
Sbjct: 61  PKLEIIQKSLEGEHLDFRTAISTAEMIRSAAARVGGSRVASACIALQEHLNNNNLNGSKE 120

Query: 121 AYKKLSWEYYVIRDSFHHILQAEKTVEV 149
           AYKKLSWEYYVIRDSFHH+LQAEKTVEV
Sbjct: 121 AYKKLSWEYYVIRDSFHHMLQAEKTVEV 148

[Close]

BLAST of MELO3C004751 vs. NCBI nr
Match: gi|566167419|ref|XP_006384636.1| (hypothetical protein POPTR_0004s19690g [Populus trichocarpa])

HSP 1 Score: 62.8 bits (151), Expect = 6.0e-07
Identity = 35/127 (27.56%), Postives = 67/127 (52.76%), Query Frame = 1


Query: 25  FIDALRQQGFLDNDFNNRRTAPGH-----LDSLVTFCVESEPKLEIIQKALEGEHVDFRT 84
           F+ +L +QG LD+ F+     P       +D + TFC ++E  +  + + L    +++  
Sbjct: 13  FVKSLHEQGILDSHFDEILDLPRESPQFVIDLVSTFCSDAENAIAALIRYLNEPDINYSR 72

Query: 85  AINTSEMIRSAATRVGGSRVASACIALQEHLNNNNLNGSKEAYKKLSWEYYVIRDSFHHI 144
            I+    IR A++ +GG R+A AC  L+    + + +    A+ K   EY ++++ F+ I
Sbjct: 73  VIDQVHQIRGASSCIGGHRMALACRELRYACEDKDKDRCLAAFGKTKDEYQILKEKFNII 132

Query: 145 LQAEKTV 147
           LQ E+T+
Sbjct: 133 LQMERTM 139

[Close]

BLAST of MELO3C004751 vs. NCBI nr
Match: gi|743905712|ref|XP_011046261.1| (PREDICTED: histidine-containing phosphotransfer protein 1-like [Populus euphratica])

HSP 1 Score: 62.4 bits (150), Expect = 7.8e-07
Identity = 34/127 (26.77%), Postives = 67/127 (52.76%), Query Frame = 1


Query: 25  FIDALRQQGFLDNDFNNRRTAPGH-----LDSLVTFCVESEPKLEIIQKALEGEHVDFRT 84
           F+ +L +QG LD+ F+     P       +D + TFC ++E  +  + + L    +++  
Sbjct: 13  FVKSLHEQGILDSHFDEILDLPRESPQFVIDLVSTFCSDAENAIAALIRYLNEPDINYTR 72

Query: 85  AINTSEMIRSAATRVGGSRVASACIALQEHLNNNNLNGSKEAYKKLSWEYYVIRDSFHHI 144
            ++    IR A++ +GG R+A AC  L+    + + +    A+ K   EY ++++ F+ I
Sbjct: 73  VVDQVHQIRGASSCIGGHRMALACRELRYACEDKDKDRCLAAFGKTKDEYQILKEKFNII 132

Query: 145 LQAEKTV 147
           LQ E+T+
Sbjct: 133 LQMERTM 139

[Close]

BLAST of MELO3C004751 vs. NCBI nr
Match: gi|590587113|ref|XP_007015885.1| (Histidine-containing phosphotransfer protein, putative [Theobroma cacao])

HSP 1 Score: 60.5 bits (145), Expect = 3.0e-06
Identity = 33/133 (24.81%), Postives = 66/133 (49.62%), Query Frame = 1


Query: 20  QMIHKFIDALRQQGFLDNDFNNRRTAPGH------LDSLVTFCVESEPKLEIIQKALEGE 79
           Q +  +I ++  QG LD+ F++ +           ++ +  FC ++E  +  I + L   
Sbjct: 8   QELKNYIQSMHDQGVLDHHFDHVKALQNEENPQFVMEVISMFCQDAEIGVAEITRFLNAP 67

Query: 80  HVDFRTAINTSEMIRSAATRVGGSRVASACIALQEHLNNNNLNGSKEAYKKLSWEYYVIR 139
            VDF   IN    ++ +++ +GG R+A AC  L++   N +     E ++++  EY  +R
Sbjct: 68  VVDFAKVINFVHQLKGSSSSIGGQRMALACRELRQASENRDKERCLEIFERMKQEYNTLR 127

Query: 140 DSFHHILQAEKTV 147
              + I Q E+T+
Sbjct: 128 GCLNAISQMERTI 140

The following BLAST results are available for this feature:

BLAST of MELO3C004751 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVC3_CUCSA	1.1e-73	94.59	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G153540 PE=4 SV=1	[more]
U5GFZ5_POPTR	4.1e-07	27.56	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s19690g PE=4 SV=1	[more]
A0A061GZR7_THECC	2.1e-06	24.81	Histidine-containing phosphotransfer protein, putative OS=Theobroma cacao GN=TCM...	[more]

BLAST of MELO3C004751 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G39340.1	9.1e-06	22.96	histidine-containing phosphotransmitter 3	[more]

BLAST of MELO3C004751 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659071740\|ref\|XP_008461693.1\|	1.4e-77	100.00	PREDICTED: histidine-containing phosphotransfer protein 5-like [Cucumis melo]	[more]
gi\|700209813\|gb\|KGN64909.1\|	1.6e-73	94.59	hypothetical protein Csa_1G153540 [Cucumis sativus]	[more]
gi\|566167419\|ref\|XP_006384636.1\|	6.0e-07	27.56	hypothetical protein POPTR_0004s19690g [Populus trichocarpa]	[more]
gi\|743905712\|ref\|XP_011046261.1\|	7.8e-07	26.77	PREDICTED: histidine-containing phosphotransfer protein 1-like [Populus euphrati...	[more]
gi\|590587113\|ref\|XP_007015885.1\|	3.0e-06	24.81	Histidine-containing phosphotransfer protein, putative [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008207	Sig_transdc_His_kin_Hpt_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0000160	phosphorelay signal transduction system

Vocabulary: **Molecular Function**
Term	Definition
GO:0004871	signal transducer activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000160	phosphorelay signal transduction system
cellular_component	GO:0005622	intracellular
cellular_component	GO:0044424	intracellular part
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004871	signal transducer activity
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU58171	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C004751T1	MELO3C004751T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU58171	MU58171	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008207	Signal transduction histidine kinase, phosphotransfer (Hpt) domain	GENE3D	G3DSA:1.20.120.160		coord: 52..140 score: 4.
IPR008207	Signal transduction histidine kinase, phosphotransfer (Hpt) domain	unknown	SSF47226	Histidine-containing phosphotransfer domain, HPT domain	coord: 49..145 score: 4.12

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C004751	Csa1G153540	Cucumber (Chinese Long) v2	cumeB015
MELO3C004751	Cla003561	Watermelon (97103) v1	mewmB159
MELO3C004751	ClCG01G012480	Watermelon (Charleston Gray)	mewcgB141
MELO3C004751	Cla97C01G011710	Watermelon (97103) v2	mewmbB143
MELO3C004751	Bhi08G000063	Wax gourd	mewgoB174
MELO3C004751	CSPI01G14470	Wild cucumber (PI 183967)	cpimeB011
MELO3C004751	CmaCh13G002880	Cucurbita maxima (Rimu)	cmameB196
MELO3C004751	Lsi03G001060	Bottle gourd (USVL1VR-Ls)	lsimeB244
MELO3C004751	CsGy1G014400	Cucumber (Gy14) v2	cgybmeB010
MELO3C004751	CsaV3_1G014640	Cucumber (Chinese Long) v3	cucmeB010

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C004751	Cucumber (Gy14) v1	cgymeB365
MELO3C004751	Cucurbita maxima (Rimu)	cmameB204