Csa1G153540 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G153540
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Histidine-containing phosphotransfer protein; contains IPR008207 (Signal transduction histidine kinase, phosphotransfer (Hpt) domain)
Location	Chr1 : 9973572 .. 9974504 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGCAGCCGCCTCTTCCTCTTCCTCTCACTCACAACCCCCTCGTTCTCAGCAACAAATGATCCATAAATTCATCGATGCTTTGCGCCAACAGGTGAATAATATATCATCATCTTCACTCTCTGTTTTTTCAATTTTCTTGAGTTCTGATTGGGTTTCTTTCTAGGGATTTCTTGATGATGATTTCAATAACCGGAGAACTGCCCCTGGGCATCTAGATTCATTGGTAACATTCTGCGTCGAGTCCGAACCTAAGCTCGAAATCATCCAGAAATCTCTGTAAGATTCAAAAACCCTAAAAACCCTAACACGGTTCCTTTTCTTTCTTTTTTTTTTTTGGTATTTAATGTAATTACTTCGTTCCGTTTTGGTTCTTTCAGGGAAGGTGAGCATTTGGATTTTCGTACTGCGATTAGCACTGCAGAAATGATCCGATCTGCTGCGGCAAGGTAATTTCGGATCAATTCGATTTAAAATTCTTGTTTCTGTTTCTTTTATAAAAGTGAGTTTGAGGATAATTTGAAGGGTTTTGTTTATGATTATGATCTGATCGAACAGAGTCGGTGGATCTCGAGTAGCAAGTGCTTGTATTGCATTACAAGAGCATTTGAATAACAATAACCTTAATGGGTAATCAACTGTGTTAATTAGTTTAACTAGTAAGTCTTTAAAACAATTTGATGATGATTATTCTTAAATCTTATTATTATTTTTACTTTTTCTTCGTCAGTTCAAAAGAAGCTTACAAGAAACTCTCCTGGGAATACTATGTCATACGTGATTCTTTCCACCACATGCTTCAAGTAATTTTATTTCCTCATTTTTTTCTTTAATATATATAAATGATTTCTTGAAAATTTTACCAAGATATCAATTATTTCTTGTGTTGGTTTTTGTGATTTAACAGGCTGAGAAGACAGTGGAGGTTTAA

mRNA sequence

ATGTCTGCAGCCGCCTCTTCCTCTTCCTCTCACTCACAACCCCCTCGTTCTCAGCAACAAATGATCCATAAATTCATCGATGCTTTGCGCCAACAGGGATTTCTTGATGATGATTTCAATAACCGGAGAACTGCCCCTGGGCATCTAGATTCATTGGTAACATTCTGCGTCGAGTCCGAACCTAAGCTCGAAATCATCCAGAAATCTCTGGAAGGTGAGCATTTGGATTTTCGTACTGCGATTAGCACTGCAGAAATGATCCGATCTGCTGCGGCAAGAGTCGGTGGATCTCGAGTAGCAAGTGCTTGTATTGCATTACAAGAGCATTTGAATAACAATAACCTTAATGGTTCAAAAGAAGCTTACAAGAAACTCTCCTGGGAATACTATGTCATACGTGATTCTTTCCACCACATGCTTCAAGCTGAGAAGACAGTGGAGGTTTAA

Coding sequence (CDS)

ATGTCTGCAGCCGCCTCTTCCTCTTCCTCTCACTCACAACCCCCTCGTTCTCAGCAACAAATGATCCATAAATTCATCGATGCTTTGCGCCAACAGGGATTTCTTGATGATGATTTCAATAACCGGAGAACTGCCCCTGGGCATCTAGATTCATTGGTAACATTCTGCGTCGAGTCCGAACCTAAGCTCGAAATCATCCAGAAATCTCTGGAAGGTGAGCATTTGGATTTTCGTACTGCGATTAGCACTGCAGAAATGATCCGATCTGCTGCGGCAAGAGTCGGTGGATCTCGAGTAGCAAGTGCTTGTATTGCATTACAAGAGCATTTGAATAACAATAACCTTAATGGTTCAAAAGAAGCTTACAAGAAACTCTCCTGGGAATACTATGTCATACGTGATTCTTTCCACCACATGCTTCAAGCTGAGAAGACAGTGGAGGTTTAA

Protein sequence

MSAAASSSSSHSQPPRSQQQMIHKFIDALRQQGFLDDDFNNRRTAPGHLDSLVTFCVESEPKLEIIQKSLEGEHLDFRTAISTAEMIRSAAARVGGSRVASACIALQEHLNNNNLNGSKEAYKKLSWEYYVIRDSFHHMLQAEKTVEV*

Homology

[Close]

BLAST of Csa1G153540 vs. TrEMBL
Match: A0A0A0LVC3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G153540 PE=4 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 3.8e-77
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 1


Query: 1   MSAAASSSSSHSQPPRSQQQMIHKFIDALRQQGFLDDDFNNRRTAPGHLDSLVTFCVESE 60
           MSAAASSSSSHSQPPRSQQQMIHKFIDALRQQGFLDDDFNNRRTAPGHLDSLVTFCVESE
Sbjct: 1   MSAAASSSSSHSQPPRSQQQMIHKFIDALRQQGFLDDDFNNRRTAPGHLDSLVTFCVESE 60

Query: 61  PKLEIIQKSLEGEHLDFRTAISTAEMIRSAAARVGGSRVASACIALQEHLNNNNLNGSKE 120
           PKLEIIQKSLEGEHLDFRTAISTAEMIRSAAARVGGSRVASACIALQEHLNNNNLNGSKE
Sbjct: 61  PKLEIIQKSLEGEHLDFRTAISTAEMIRSAAARVGGSRVASACIALQEHLNNNNLNGSKE 120

Query: 121 AYKKLSWEYYVIRDSFHHMLQAEKTVEV 149
           AYKKLSWEYYVIRDSFHHMLQAEKTVEV
Sbjct: 121 AYKKLSWEYYVIRDSFHHMLQAEKTVEV 148

[Close]

BLAST of Csa1G153540 vs. TrEMBL
Match: U5GFZ5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s19690g PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.2e-06
Identity = 34/127 (26.77%), Postives = 65/127 (51.18%), Query Frame = 1


Query: 25  FIDALRQQGFLDDDFNNRRTAPGH-----LDSLVTFCVESEPKLEIIQKSLEGEHLDFRT 84
           F+ +L +QG LD  F+     P       +D + TFC ++E  +  + + L    +++  
Sbjct: 13  FVKSLHEQGILDSHFDEILDLPRESPQFVIDLVSTFCSDAENAIAALIRYLNEPDINYSR 72

Query: 85  AISTAEMIRSAAARVGGSRVASACIALQEHLNNNNLNGSKEAYKKLSWEYYVIRDSFHHM 144
            I     IR A++ +GG R+A AC  L+    + + +    A+ K   EY ++++ F+ +
Sbjct: 73  VIDQVHQIRGASSCIGGHRMALACRELRYACEDKDKDRCLAAFGKTKDEYQILKEKFNII 132

Query: 145 LQAEKTV 147
           LQ E+T+
Sbjct: 133 LQMERTM 139

[Close]

BLAST of Csa1G153540 vs. TAIR10
Match: AT5G39340.1 (AT5G39340.1 histidine-containing phosphotransmitter 3)

HSP 1 Score: 48.9 bits (115), Expect = 3.1e-06
Identity = 31/135 (22.96%), Postives = 62/135 (45.93%), Query Frame = 1


Query: 19  QQMIHKFIDALRQQGFLDDDFNNRRT-----APGHLDSLVT-FCVESEPKLEIIQKSLEG 78
           Q+    F  +L  QGFLDD F   +      +P  +  +VT F  + E  +  + ++L+ 
Sbjct: 9   QRRFCDFTISLYHQGFLDDQFTELKKLQDECSPDFVAEVVTLFFEDCEKLISNMARALDQ 68

Query: 79  E-HLDFRTAISTAEMIRSAAARVGGSRVASACIALQEHLNNNNLNGSKEAYKKLSWEYYV 138
             ++DF+   S+   ++ +++ VG  RV   C+ L+E  ++ N  G     +++  EY  
Sbjct: 69  TGNVDFKLVGSSVHQLKGSSSSVGAKRVKGLCVTLKECCDSQNYEGCVRCLQQVDIEYKT 128

Query: 139 IRDSFHHMLQAEKTV 147
           ++     +   E+ +
Sbjct: 129 LKAKLQDLFNLEQQI 143

[Close]

BLAST of Csa1G153540 vs. NCBI nr
Match: gi|700209813|gb|KGN64909.1| (hypothetical protein Csa_1G153540 [Cucumis sativus])

HSP 1 Score: 295.4 bits (755), Expect = 5.5e-77
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 1


Query: 1   MSAAASSSSSHSQPPRSQQQMIHKFIDALRQQGFLDDDFNNRRTAPGHLDSLVTFCVESE 60
           MSAAASSSSSHSQPPRSQQQMIHKFIDALRQQGFLDDDFNNRRTAPGHLDSLVTFCVESE
Sbjct: 1   MSAAASSSSSHSQPPRSQQQMIHKFIDALRQQGFLDDDFNNRRTAPGHLDSLVTFCVESE 60

Query: 61  PKLEIIQKSLEGEHLDFRTAISTAEMIRSAAARVGGSRVASACIALQEHLNNNNLNGSKE 120
           PKLEIIQKSLEGEHLDFRTAISTAEMIRSAAARVGGSRVASACIALQEHLNNNNLNGSKE
Sbjct: 61  PKLEIIQKSLEGEHLDFRTAISTAEMIRSAAARVGGSRVASACIALQEHLNNNNLNGSKE 120

Query: 121 AYKKLSWEYYVIRDSFHHMLQAEKTVEV 149
           AYKKLSWEYYVIRDSFHHMLQAEKTVEV
Sbjct: 121 AYKKLSWEYYVIRDSFHHMLQAEKTVEV 148

[Close]

BLAST of Csa1G153540 vs. NCBI nr
Match: gi|659071740|ref|XP_008461693.1| (PREDICTED: histidine-containing phosphotransfer protein 5-like [Cucumis melo])

HSP 1 Score: 283.9 bits (725), Expect = 1.6e-73
Identity = 140/148 (94.59%), Postives = 146/148 (98.65%), Query Frame = 1


Query: 1   MSAAASSSSSHSQPPRSQQQMIHKFIDALRQQGFLDDDFNNRRTAPGHLDSLVTFCVESE 60
           MSAAASSSSSH QPPRSQQQMIHKFIDALRQQGFLD+DFNNRRTAPGHLDSLVTFCVESE
Sbjct: 1   MSAAASSSSSHPQPPRSQQQMIHKFIDALRQQGFLDNDFNNRRTAPGHLDSLVTFCVESE 60

Query: 61  PKLEIIQKSLEGEHLDFRTAISTAEMIRSAAARVGGSRVASACIALQEHLNNNNLNGSKE 120
           PKLEIIQK+LEGEH+DFRTAI+T+EMIRSAA RVGGSRVASACIALQEHLNNNNLNGSKE
Sbjct: 61  PKLEIIQKALEGEHVDFRTAINTSEMIRSAATRVGGSRVASACIALQEHLNNNNLNGSKE 120

Query: 121 AYKKLSWEYYVIRDSFHHMLQAEKTVEV 149
           AYKKLSWEYYVIRDSFHH+LQAEKTVEV
Sbjct: 121 AYKKLSWEYYVIRDSFHHILQAEKTVEV 148

[Close]

BLAST of Csa1G153540 vs. NCBI nr
Match: gi|698531048|ref|XP_009762355.1| (PREDICTED: histidine-containing phosphotransfer protein 1-like [Nicotiana sylvestris])

HSP 1 Score: 64.7 bits (156), Expect = 1.6e-07
Identity = 36/134 (26.87%), Postives = 70/134 (52.24%), Query Frame = 1


Query: 19  QQMIHKFIDALRQQGFLDDDFNNRR-----TAPGHLDSLVT-FCVESEPKLEIIQKSLEG 78
           Q+    FI+AL  +GFLDD F   +     ++P  +  +VT F  +SE  +  +  +L+ 
Sbjct: 8   QKQFIDFINALYHEGFLDDQFLQLQKLQDESSPDFVFEVVTLFFEDSEKIINNLAATLQQ 67

Query: 79  EHLDFRTAISTAEMIRSAAARVGGSRVASACIALQEHLNNNNLNGSKEAYKKLSWEYYVI 138
           + +DF+   S     + +++ VG  RV +ACIA +      NL G  +  + +  EY+++
Sbjct: 68  QAVDFKQVDSHVHQFKGSSSSVGAQRVTNACIAFRNFCEQKNLEGCVQCLQHMKHEYFLV 127

Query: 139 RDSFHHMLQAEKTV 147
           ++    +L+ E+ +
Sbjct: 128 KNKLETLLRLEQQI 141

[Close]

BLAST of Csa1G153540 vs. NCBI nr
Match: gi|697106705|ref|XP_009607172.1| (PREDICTED: histidine-containing phosphotransfer protein 1-like [Nicotiana tomentosiformis])

HSP 1 Score: 62.4 bits (150), Expect = 7.8e-07
Identity = 36/134 (26.87%), Postives = 68/134 (50.75%), Query Frame = 1


Query: 19  QQMIHKFIDALRQQGFLDDDFNNRR-----TAPGHLDSLVT-FCVESEPKLEIIQKSLEG 78
           Q+    FI AL  +GFLDD F   +     + P  +  +VT F  +SE  +  +  +L+ 
Sbjct: 8   QKQFIDFITALYHEGFLDDQFLQLKKLQDESNPDFVFEVVTLFFEDSEKIINNLAATLQQ 67

Query: 79  EHLDFRTAISTAEMIRSAAARVGGSRVASACIALQEHLNNNNLNGSKEAYKKLSWEYYVI 138
           + +DF+   S     + +++ VG  RV +ACIA +      NL G  +  + +  EY+++
Sbjct: 68  QVVDFKQVDSHVHQFKGSSSSVGAQRVTNACIAFRNFCEQKNLEGCVQCLQHVKHEYFLV 127

Query: 139 RDSFHHMLQAEKTV 147
           ++    +L+ E+ +
Sbjct: 128 KNKLETLLRLEQQI 141

[Close]

BLAST of Csa1G153540 vs. NCBI nr
Match: gi|566167419|ref|XP_006384636.1| (hypothetical protein POPTR_0004s19690g [Populus trichocarpa])

HSP 1 Score: 61.2 bits (147), Expect = 1.7e-06
Identity = 34/127 (26.77%), Postives = 65/127 (51.18%), Query Frame = 1


Query: 25  FIDALRQQGFLDDDFNNRRTAPGH-----LDSLVTFCVESEPKLEIIQKSLEGEHLDFRT 84
           F+ +L +QG LD  F+     P       +D + TFC ++E  +  + + L    +++  
Sbjct: 13  FVKSLHEQGILDSHFDEILDLPRESPQFVIDLVSTFCSDAENAIAALIRYLNEPDINYSR 72

Query: 85  AISTAEMIRSAAARVGGSRVASACIALQEHLNNNNLNGSKEAYKKLSWEYYVIRDSFHHM 144
            I     IR A++ +GG R+A AC  L+    + + +    A+ K   EY ++++ F+ +
Sbjct: 73  VIDQVHQIRGASSCIGGHRMALACRELRYACEDKDKDRCLAAFGKTKDEYQILKEKFNII 132

Query: 145 LQAEKTV 147
           LQ E+T+
Sbjct: 133 LQMERTM 139

The following BLAST results are available for this feature:

BLAST of Csa1G153540 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVC3_CUCSA	3.8e-77	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G153540 PE=4 SV=1	[more]
U5GFZ5_POPTR	1.2e-06	26.77	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s19690g PE=4 SV=1	[more]

BLAST of Csa1G153540 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G39340.1	3.1e-06	22.96	histidine-containing phosphotransmitter 3	[more]

BLAST of Csa1G153540 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209813\|gb\|KGN64909.1\|	5.5e-77	100.00	hypothetical protein Csa_1G153540 [Cucumis sativus]	[more]
gi\|659071740\|ref\|XP_008461693.1\|	1.6e-73	94.59	PREDICTED: histidine-containing phosphotransfer protein 5-like [Cucumis melo]	[more]
gi\|698531048\|ref\|XP_009762355.1\|	1.6e-07	26.87	PREDICTED: histidine-containing phosphotransfer protein 1-like [Nicotiana sylves...	[more]
gi\|697106705\|ref\|XP_009607172.1\|	7.8e-07	26.87	PREDICTED: histidine-containing phosphotransfer protein 1-like [Nicotiana toment...	[more]
gi\|566167419\|ref\|XP_006384636.1\|	1.7e-06	26.77	hypothetical protein POPTR_0004s19690g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008207	Sig_transdc_His_kin_Hpt_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0000160	phosphorelay signal transduction system

Vocabulary: **Molecular Function**
Term	Definition
GO:0004871	signal transducer activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000160	phosphorelay signal transduction system
cellular_component	GO:0044424	intracellular part
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005622	intracellular
molecular_function	GO:0004871	signal transducer activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G153540.1	Csa1G153540.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008207	Signal transduction histidine kinase, phosphotransfer (Hpt) domain	GENE3D	G3DSA:1.20.120.160		coord: 52..140 score: 8.
IPR008207	Signal transduction histidine kinase, phosphotransfer (Hpt) domain	unknown	SSF47226	Histidine-containing phosphotransfer domain, HPT domain	coord: 49..145 score: 1.62

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G153540	Cla003561	Watermelon (97103) v1	cuwmB042
Csa1G153540	MELO3C004751	Melon (DHL92) v3.5.1	cumeB015
Csa1G153540	ClCG01G012480	Watermelon (Charleston Gray)	cuwcgB024
Csa1G153540	Lsi03G001060	Bottle gourd (USVL1VR-Ls)	culsiB044
Csa1G153540	MELO3C004751.2	Melon (DHL92) v3.6.1	cumedB010
Csa1G153540	Cla97C01G011710	Watermelon (97103) v2	cuwmbB009
Csa1G153540	Bhi08G000063	Wax gourd	cuwgoB049
Csa1G153540	CSPI01G14470	Wild cucumber (PI 183967)	cpicuB000
Csa1G153540	CmaCh13G002880	Cucurbita maxima (Rimu)	cmacuB203
Csa1G153540	CmaCh12G007850	Cucurbita maxima (Rimu)	cmacuB163
Csa1G153540	CmoCh13G003160	Cucurbita moschata (Rifu)	cmocuB188
Csa1G153540	Cp4.1LG20g07030	Cucurbita pepo (Zucchini)	cpecuB516
Csa1G153540	CsGy1G014400	Cucumber (Gy14) v2	cgybcuB001

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G153540	Watermelon (97103) v2	cuwmbB026
Csa1G153540	Cucumber (Gy14) v1	cgycuB305
Csa1G153540	Cucurbita maxima (Rimu)	cmacuB579
Csa1G153540	Cucurbita moschata (Rifu)	cmocuB148
Csa1G153540	Cucurbita moschata (Rifu)	cmocuB569
Csa1G153540	Watermelon (Charleston Gray)	cuwcgB028
Csa1G153540	Watermelon (97103) v1	cuwmB065
Csa1G153540	Cucurbita pepo (Zucchini)	cpecuB848
Csa1G153540	Bottle gourd (USVL1VR-Ls)	culsiB005
Csa1G153540	Bottle gourd (USVL1VR-Ls)	culsiB021
Csa1G153540	Melon (DHL92) v3.6.1	cumedB078
Csa1G153540	Silver-seed gourd	carcuB0931