MELO3C003827 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C003827
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionMyb family transcription factor family protein
Locationchr4 : 5177035 .. 5177683 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TACCATCCCTCAACTTCTTCCTTCTTTCCCCTCTTATTGAGACATACTTTTCCCCAACCTTCTTTGTCAACTACCAGCATACATTCCCCTTTTTCAGTGCCAAACTAACTGAAAATAATGGCGTCAAGCTCTGTCACATCGACACATGGCTTTTACTCATCCTGGACCAAAAAGGAAAACAAGAAATTTGAGGAGGCATTGGCCTTCTTTGACGAGGACACACCAGACCGTTTTGAGAAAGTAGCGAGGGCTGTTGGTGGTGGGAAAACCGCTGAGGAAGCAAGAAGGCTTTATGAGTTACTAGTACGAGATGTCAGAAAAATAGAAGCTGGTCAAGTCCAAATACCCCTTTACAAGAACGCTGGATGTAATGGCAGAGGGTATGCTGACCAGCAGAGGTAATATCCAACTTGCTGAACATTTCCTCTCCGAAATCACTCCAAACCCTGTGTCCTATCTCAGTAATCTTCTCCTTTCTACTAGTACATTAGAATAAATGTCCTTCACAAGAAACTTATGTCCTATAATTCCTATAGAAATATATTGAGCCAATTTTATAGCTAGCTCGTCGTTAAATTATGGTTTAGTGCAGAAATGTATTAACGGATGACTGACTTTTCATTTCAGCAATCTATATAACATGACACTT

mRNA sequence

TACCATCCCTCAACTTCTTCCTTCTTTCCCCTCTTATTGAGACATACTTTTCCCCAACCTTCTTTGTCAACTACCAGCATACATTCCCCTTTTTCAGTGCCAAACTAACTGAAAATAATGGCGTCAAGCTCTGTCACATCGACACATGGCTTTTACTCATCCTGGACCAAAAAGGAAAACAAGAAATTTGAGGAGGCATTGGCCTTCTTTGACGAGGACACACCAGACCGTTTTGAGAAAGTAGCGAGGGCTGTTGGTGGTGGGAAAACCGCTGAGGAAGCAAGAAGGCTTTATGAGTTACTAGTACGAGATGTCAGAAAAATAGAAGCTGGTCAAGTCCAAATACCCCTTTACAAGAACGCTGGATGTAATGGCAGAGGGTATGCTGACCAGCAGAGGTAATATCCAACTTGCTGAACATTTCCTCTCCGAAATCACTCCAAACCCTGTGTCCTATCTCAGTAATCTTCTCCTTTCTACTAGTACATTAGAATAAATGTCCTTCACAAGAAACTTATGTCCTATAATTCCTATAGAAATATATTGAGCCAATTTTATAGCTAGCTCGTCGTTAAATTATGGTTTAGTGCAGAAATGTATTAACGGATGACTGACTTTTCATTTCAGCAATCTATATAACATGACACTT

Coding sequence (CDS)

ATGGCGTCAAGCTCTGTCACATCGACACATGGCTTTTACTCATCCTGGACCAAAAAGGAAAACAAGAAATTTGAGGAGGCATTGGCCTTCTTTGACGAGGACACACCAGACCGTTTTGAGAAAGTAGCGAGGGCTGTTGGTGGTGGGAAAACCGCTGAGGAAGCAAGAAGGCTTTATGAGTTACTAGTACGAGATGTCAGAAAAATAGAAGCTGGTCAAGTCCAAATACCCCTTTACAAGAACGCTGGATGTAATGGCAGAGGGTATGCTGACCAGCAGAGGTAA

Protein sequence

MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR*
Homology
[Close]
BLAST of MELO3C003827 vs. Swiss-Prot
Match: RADL3_ARATH (Protein RADIALIS-like 3 OS=Arabidopsis thaliana GN=RL3 PE=2 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 9.6e-19
Identity = 50/85 (58.82%), Postives = 63/85 (74.12%), Query Frame = 1 

Query: 1  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYE 60
          MAS+S++S+    +SWT+KENK FE ALA +D+DTPDR+  VARAV GGK+AEE RR YE
Sbjct: 1  MASNSMSSS----ASWTRKENKLFERALATYDQDTPDRWHNVARAV-GGKSAEEVRRHYE 60

Query: 61 LLVRDVRKIEAGQVQIPLYKNAGCN 86
          LL+RDV  IE+G+   P Y++ G N
Sbjct: 61 LLIRDVNDIESGRYPHPNYRSNGNN 80

[Close]
BLAST of MELO3C003827 vs. Swiss-Prot
Match: RADL1_ARATH (Protein RADIALIS-like 1 OS=Arabidopsis thaliana GN=RL1 PE=2 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.1e-17
Identity = 49/96 (51.04%), Postives = 65/96 (67.71%), Query Frame = 1 

Query: 1  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYE 60
          MASSS++S      SWT K+NK FE+ALA +D+DTP+R++ VA+ V GGKT EE +R YE
Sbjct: 1  MASSSMSSQSS--GSWTAKQNKAFEQALATYDQDTPNRWQNVAKVV-GGKTTEEVKRHYE 60

Query: 61 LLVRDVRKIEAGQVQIPLYKNAG--CNGRGYADQQR 95
          LLV+D+  IE G V  P Y+ +G   NGR   +++R
Sbjct: 61 LLVQDINSIENGHVPFPNYRTSGGCTNGRLSQEEKR 93

[Close]
BLAST of MELO3C003827 vs. Swiss-Prot
Match: RADL2_ARATH (Protein RADIALIS-like 2 OS=Arabidopsis thaliana GN=RL2 PE=2 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.4e-17
Identity = 51/89 (57.30%), Postives = 59/89 (66.29%), Query Frame = 1 

Query: 1  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYE 60
          MAS S++S      SWT K+NK FE ALA +D+DTPDR+  VARAV GGKT EEA+R Y+
Sbjct: 1  MASGSMSSYGS--GSWTVKQNKAFERALAVYDQDTPDRWHNVARAV-GGKTPEEAKRQYD 60

Query: 61 LLVRDVRKIEAGQVQIPLYK-NAGCNGRG 89
          LLVRD+  IE G V  P YK   G + RG
Sbjct: 61 LLVRDIESIENGHVPFPDYKTTTGNSNRG 86

[Close]
BLAST of MELO3C003827 vs. Swiss-Prot
Match: RADL4_ARATH (Protein RADIALIS-like 4 OS=Arabidopsis thaliana GN=RL4 PE=2 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.4e-17
Identity = 47/81 (58.02%), Postives = 61/81 (75.31%), Query Frame = 1 

Query: 1  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYE 60
          MASSS+++     SSWT +E+K+FE ALA FD+DTPDR++K+ARAV GGK+ EE +R YE
Sbjct: 1  MASSSMST-----SSWTAREDKQFEMALAKFDKDTPDRWQKIARAV-GGKSTEEVKRHYE 60

Query: 61 LLVRDVRKIEAGQVQIPLYKN 82
          LL+RDV  IE+G+   P Y+N
Sbjct: 61 LLLRDVNDIESGRYPQPRYRN 75

[Close]
BLAST of MELO3C003827 vs. Swiss-Prot
Match: RADL5_ARATH (Protein RADIALIS-like 5 OS=Arabidopsis thaliana GN=RL5 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.5e-16
Identity = 48/93 (51.61%), Postives = 62/93 (66.67%), Query Frame = 1 

Query: 1  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYE 60
          MASSS++S+    SSWT K+NK FE ALA +D+DTPDR++ VA+AV G K+AEE +R Y+
Sbjct: 1  MASSSMSSS----SSWTSKQNKMFERALAVYDKDTPDRWQNVAKAV-GSKSAEEVKRHYD 60

Query: 61 LLVRDVRKIEAGQVQIPLYK--NAGCNGRGYAD 92
          +LV D+  IE   V +P YK  + G   RG  D
Sbjct: 61 ILVEDLMNIEQDLVPLPKYKTVDVGSKSRGIDD 88

[Close]
BLAST of MELO3C003827 vs. TrEMBL
Match: A0A0A0LGL4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G857080 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.9e-46
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1 

Query: 1  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYE 60
          MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYE
Sbjct: 1  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYE 60

Query: 61 LLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR 95
          LLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR
Sbjct: 61 LLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR 94

[Close]
BLAST of MELO3C003827 vs. TrEMBL
Match: A0A103YCJ7_CYNCS (Homeodomain-like protein (Fragment) OS=Cynara cardunculus var. scolymus GN=Ccrd_015085 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.0e-22
Identity = 53/94 (56.38%), Postives = 77/94 (81.91%), Query Frame = 1 

Query: 1   MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYE 60
           MASSS+TS+    SSWT ++NK+FEEALA++++D+PDR+  +ARAV GGK+ EE +R YE
Sbjct: 115 MASSSMTSSRSSGSSWTPRQNKQFEEALAYYNKDSPDRWHNIARAV-GGKSVEEVKRHYE 174

Query: 61  LLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR 95
           +LVRD+ +IE+ QV +P Y++ G NGRG+A++QR
Sbjct: 175 ILVRDIMQIESDQVPLPNYRDIGSNGRGFANEQR 207

[Close]
BLAST of MELO3C003827 vs. TrEMBL
Match: A0A068UIQ1_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00024780001 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.7e-22
Identity = 55/94 (58.51%), Postives = 74/94 (78.72%), Query Frame = 1 

Query: 1  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYE 60
          MASSS+TS+     SWT K+NK+FEEALA +D+DTPDR+  +ARAV GGK+ EE RR YE
Sbjct: 1  MASSSMTSSRSSSQSWTAKQNKQFEEALATYDKDTPDRWYNIARAV-GGKSEEEVRRHYE 60

Query: 61 LLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR 95
          +LV+D+ +IE+ QV +P Y++   NGRGYA++QR
Sbjct: 61 VLVKDIMQIESDQVPLPNYRSMASNGRGYANEQR 93

[Close]
BLAST of MELO3C003827 vs. TrEMBL
Match: A0A162A4Z7_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_019534 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 2.9e-22
Identity = 52/94 (55.32%), Postives = 75/94 (79.79%), Query Frame = 1 

Query: 1  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYE 60
          MAS+S+TS+    S+WT+++NK+FEEALA +D DTPDR+  +ARAV GGK+ EE +R Y+
Sbjct: 1  MASNSITSSRNCGSTWTQRQNKQFEEALATYDRDTPDRWHNIARAV-GGKSTEEVKRHYD 60

Query: 61 LLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR 95
          +LV+D+ +IE+ QV +P YKN G NGRG+ ++QR
Sbjct: 61 ILVKDIMQIESDQVPLPNYKNTGGNGRGFNNEQR 93

[Close]
BLAST of MELO3C003827 vs. TrEMBL
Match: M1B929_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400015461 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.6e-20
Identity = 51/81 (62.96%), Postives = 64/81 (79.01%), Query Frame = 1 

Query: 14 SSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQ 73
          ++WTK +NKKFEEALA FD+DTPDR+  +AR VGG K+AEE +R YELLV+DV KIE  Q
Sbjct: 2  ANWTKNQNKKFEEALALFDKDTPDRWHNIARCVGG-KSAEEVKRHYELLVKDVMKIENDQ 61

Query: 74 VQIPLYKNAGCNGRGYADQQR 95
          V +P Y+ A  NGR YA++QR
Sbjct: 62 VPLPNYRGASSNGRSYANEQR 81

[Close]
BLAST of MELO3C003827 vs. TAIR10
Match: AT4G39250.1 (AT4G39250.1 RAD-like 1)

HSP 1 Score: 90.5 bits (223), Expect = 6.0e-19
Identity = 49/96 (51.04%), Postives = 65/96 (67.71%), Query Frame = 1 

Query: 1  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYE 60
          MASSS++S      SWT K+NK FE+ALA +D+DTP+R++ VA+ V GGKT EE +R YE
Sbjct: 1  MASSSMSSQSS--GSWTAKQNKAFEQALATYDQDTPNRWQNVAKVV-GGKTTEEVKRHYE 60

Query: 61 LLVRDVRKIEAGQVQIPLYKNAG--CNGRGYADQQR 95
          LLV+D+  IE G V  P Y+ +G   NGR   +++R
Sbjct: 61 LLVQDINSIENGHVPFPNYRTSGGCTNGRLSQEEKR 93

[Close]
BLAST of MELO3C003827 vs. TAIR10
Match: AT2G21650.1 (AT2G21650.1 Homeodomain-like superfamily protein)

HSP 1 Score: 90.1 bits (222), Expect = 7.8e-19
Identity = 51/89 (57.30%), Postives = 59/89 (66.29%), Query Frame = 1 

Query: 1  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYE 60
          MAS S++S      SWT K+NK FE ALA +D+DTPDR+  VARAV GGKT EEA+R Y+
Sbjct: 1  MASGSMSSYGS--GSWTVKQNKAFERALAVYDQDTPDRWHNVARAV-GGKTPEEAKRQYD 60

Query: 61 LLVRDVRKIEAGQVQIPLYK-NAGCNGRG 89
          LLVRD+  IE G V  P YK   G + RG
Sbjct: 61 LLVRDIESIENGHVPFPDYKTTTGNSNRG 86

[Close]
BLAST of MELO3C003827 vs. TAIR10
Match: AT2G18328.1 (AT2G18328.1 RAD-like 4)

HSP 1 Score: 89.4 bits (220), Expect = 1.3e-18
Identity = 47/81 (58.02%), Postives = 61/81 (75.31%), Query Frame = 1 

Query: 1  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYE 60
          MASSS+++     SSWT +E+K+FE ALA FD+DTPDR++K+ARAV GGK+ EE +R YE
Sbjct: 1  MASSSMST-----SSWTAREDKQFEMALAKFDKDTPDRWQKIARAV-GGKSTEEVKRHYE 60

Query: 61 LLVRDVRKIEAGQVQIPLYKN 82
          LL+RDV  IE+G+   P Y+N
Sbjct: 61 LLLRDVNDIESGRYPQPRYRN 75

[Close]
BLAST of MELO3C003827 vs. TAIR10
Match: AT1G19510.1 (AT1G19510.1 RAD-like 5)

HSP 1 Score: 86.7 bits (213), Expect = 8.7e-18
Identity = 48/93 (51.61%), Postives = 62/93 (66.67%), Query Frame = 1 

Query: 1  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYE 60
          MASSS++S+    SSWT K+NK FE ALA +D+DTPDR++ VA+AV G K+AEE +R Y+
Sbjct: 1  MASSSMSSS----SSWTSKQNKMFERALAVYDKDTPDRWQNVAKAV-GSKSAEEVKRHYD 60

Query: 61 LLVRDVRKIEAGQVQIPLYK--NAGCNGRGYAD 92
          +LV D+  IE   V +P YK  + G   RG  D
Sbjct: 61 ILVEDLMNIEQDLVPLPKYKTVDVGSKSRGIDD 88

[Close]
BLAST of MELO3C003827 vs. TAIR10
Match: AT1G75250.1 (AT1G75250.1 RAD-like 6)

HSP 1 Score: 83.6 bits (205), Expect = 7.3e-17
Identity = 46/91 (50.55%), Postives = 57/91 (62.64%), Query Frame = 1 

Query: 1  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYE 60
          MAS+S +S     S WT  +NK FE ALA +D+DTPDR+  VA+AV GGKT EE +R Y+
Sbjct: 1  MASNSRSSI----SPWTFSQNKMFERALAVYDKDTPDRWHNVAKAV-GGKTVEEVKRHYD 60

Query: 61 LLVRDVRKIEAGQVQIPLYKNAGCNGRGYAD 92
          +LV D+  IE G+V +P YK    N R   D
Sbjct: 61 ILVEDLINIETGRVPLPNYKTFESNSRSIND 86

[Close]
BLAST of MELO3C003827 vs. NCBI nr
Match: gi|659133100|ref|XP_008466554.1| (PREDICTED: protein RADIALIS-like 4 [Cucumis melo])

HSP 1 Score: 192.2 bits (487), Expect = 4.1e-46
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1 

Query: 1  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYE 60
          MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYE
Sbjct: 1  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYE 60

Query: 61 LLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR 95
          LLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR
Sbjct: 61 LLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR 94

[Close]
BLAST of MELO3C003827 vs. NCBI nr
Match: gi|747073426|ref|XP_011083673.1| (PREDICTED: protein RADIALIS-like 3 [Sesamum indicum])

HSP 1 Score: 117.5 bits (293), Expect = 1.3e-23
Identity = 57/94 (60.64%), Postives = 73/94 (77.66%), Query Frame = 1 

Query: 1  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYE 60
          MASSS+TS  G  S+WT K+NK+FEEALA +D+DTPDR+  +ARAV GGK+AEE RR YE
Sbjct: 1  MASSSMTSARGSASAWTSKQNKQFEEALAMYDKDTPDRWHNIARAV-GGKSAEEVRRHYE 60

Query: 61 LLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR 95
          +LV+D+ +IE  QV IP Y+  G N RGY ++QR
Sbjct: 61 ILVKDIMQIETDQVPIPNYRAMGSNSRGYGNEQR 93

[Close]
BLAST of MELO3C003827 vs. NCBI nr
Match: gi|976921930|gb|KVI06567.1| (Homeodomain-like protein, partial [Cynara cardunculus var. scolymus])

HSP 1 Score: 114.0 bits (284), Expect = 1.4e-22
Identity = 53/94 (56.38%), Postives = 77/94 (81.91%), Query Frame = 1 

Query: 1   MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYE 60
           MASSS+TS+    SSWT ++NK+FEEALA++++D+PDR+  +ARAV GGK+ EE +R YE
Sbjct: 115 MASSSMTSSRSSGSSWTPRQNKQFEEALAYYNKDSPDRWHNIARAV-GGKSVEEVKRHYE 174

Query: 61  LLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR 95
           +LVRD+ +IE+ QV +P Y++ G NGRG+A++QR
Sbjct: 175 ILVRDIMQIESDQVPLPNYRDIGSNGRGFANEQR 207

[Close]
BLAST of MELO3C003827 vs. NCBI nr
Match: gi|661889060|emb|CDP07503.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 113.2 bits (282), Expect = 2.4e-22
Identity = 55/94 (58.51%), Postives = 74/94 (78.72%), Query Frame = 1 

Query: 1  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYE 60
          MASSS+TS+     SWT K+NK+FEEALA +D+DTPDR+  +ARAV GGK+ EE RR YE
Sbjct: 1  MASSSMTSSRSSSQSWTAKQNKQFEEALATYDKDTPDRWYNIARAV-GGKSEEEVRRHYE 60

Query: 61 LLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR 95
          +LV+D+ +IE+ QV +P Y++   NGRGYA++QR
Sbjct: 61 VLVKDIMQIESDQVPLPNYRSMASNGRGYANEQR 93

[Close]
BLAST of MELO3C003827 vs. NCBI nr
Match: gi|1021038509|gb|KZM96292.1| (hypothetical protein DCAR_019534 [Daucus carota subsp. sativus])

HSP 1 Score: 112.5 bits (280), Expect = 4.2e-22
Identity = 52/94 (55.32%), Postives = 75/94 (79.79%), Query Frame = 1 

Query: 1  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYE 60
          MAS+S+TS+    S+WT+++NK+FEEALA +D DTPDR+  +ARAV GGK+ EE +R Y+
Sbjct: 1  MASNSITSSRNCGSTWTQRQNKQFEEALATYDRDTPDRWHNIARAV-GGKSTEEVKRHYD 60

Query: 61 LLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR 95
          +LV+D+ +IE+ QV +P YKN G NGRG+ ++QR
Sbjct: 61 ILVKDIMQIESDQVPLPNYKNTGGNGRGFNNEQR 93

The following BLAST results are available for this feature:
BLAST of MELO3C003827 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RADL3_ARATH9.6e-1958.82Protein RADIALIS-like 3 OS=Arabidopsis thaliana GN=RL3 PE=2 SV=1[more]
RADL1_ARATH1.1e-1751.04Protein RADIALIS-like 1 OS=Arabidopsis thaliana GN=RL1 PE=2 SV=1[more]
RADL2_ARATH1.4e-1757.30Protein RADIALIS-like 2 OS=Arabidopsis thaliana GN=RL2 PE=2 SV=1[more]
RADL4_ARATH2.4e-1758.02Protein RADIALIS-like 4 OS=Arabidopsis thaliana GN=RL4 PE=2 SV=1[more]
RADL5_ARATH1.5e-1651.61Protein RADIALIS-like 5 OS=Arabidopsis thaliana GN=RL5 PE=3 SV=1[more]
BLAST of MELO3C003827 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LGL4_CUCSA2.9e-46100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G857080 PE=4 SV=1[more]
A0A103YCJ7_CYNCS1.0e-2256.38Homeodomain-like protein (Fragment) OS=Cynara cardunculus var. scolymus GN=Ccrd_... [more]
A0A068UIQ1_COFCA1.7e-2258.51Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00024780001 PE=4 SV=1[more]
A0A162A4Z7_DAUCA2.9e-2255.32Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_019534 PE=4 SV=1[more]
M1B929_SOLTU1.6e-2062.96Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400015461 PE=4 SV=1[more]
BLAST of MELO3C003827 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G39250.16.0e-1951.04 RAD-like 1[more]
AT2G21650.17.8e-1957.30 Homeodomain-like superfamily protein[more]
AT2G18328.11.3e-1858.02 RAD-like 4[more]
AT1G19510.18.7e-1851.61 RAD-like 5[more]
AT1G75250.17.3e-1750.55 RAD-like 6[more]
BLAST of MELO3C003827 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659133100|ref|XP_008466554.1|4.1e-46100.00PREDICTED: protein RADIALIS-like 4 [Cucumis melo][more]
gi|747073426|ref|XP_011083673.1|1.3e-2360.64PREDICTED: protein RADIALIS-like 3 [Sesamum indicum][more]
gi|976921930|gb|KVI06567.1|1.4e-2256.38Homeodomain-like protein, partial [Cynara cardunculus var. scolymus][more]
gi|661889060|emb|CDP07503.1|2.4e-2258.51unnamed protein product [Coffea canephora][more]
gi|1021038509|gb|KZM96292.1|4.2e-2255.32hypothetical protein DCAR_019534 [Daucus carota subsp. sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009057Homeobox-like_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU55398melon EST collection version 4.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C003827T1MELO3C003827T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU55398MU55398transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009057Homeodomain-likeunknownSSF46689Homeodomain-likecoord: 14..70
score: 1.

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C003827Csa2G361710Cucumber (Chinese Long) v2cumeB127
MELO3C003827Csa3G857080Cucumber (Chinese Long) v2cumeB222
MELO3C003827Cla020769Watermelon (97103) v1mewmB368
MELO3C003827Cla022488Watermelon (97103) v1mewmB351
MELO3C003827ClCG08G015000Watermelon (Charleston Gray)mewcgB352
MELO3C003827ClCG05G018910Watermelon (Charleston Gray)mewcgB331
MELO3C003827Cla97C05G100410Watermelon (97103) v2mewmbB332
MELO3C003827Cla97C08G158570Watermelon (97103) v2mewmbB354
MELO3C003827Bhi04G000152Wax gourdmewgoB413
MELO3C003827CSPI02G20120Wild cucumber (PI 183967)cpimeB129
MELO3C003827CmaCh09G001530Cucurbita maxima (Rimu)cmameB032
MELO3C003827CmaCh05G002500Cucurbita maxima (Rimu)cmameB731
MELO3C003827CmaCh01G019150Cucurbita maxima (Rimu)cmameB424
MELO3C003827CmaCh12G004690Cucurbita maxima (Rimu)cmameB167
MELO3C003827CmoCh05G002550Cucurbita moschata (Rifu)cmomeB721
MELO3C003827CmoCh01G019780Cucurbita moschata (Rifu)cmomeB414
MELO3C003827CmoCh12G004170Cucurbita moschata (Rifu)cmomeB156
MELO3C003827CmoCh09G001500Cucurbita moschata (Rifu)cmomeB021
MELO3C003827Cp4.1LG06g01000Cucurbita pepo (Zucchini)cpemeB726
MELO3C003827Cp4.1LG07g04060Cucurbita pepo (Zucchini)cpemeB766
MELO3C003827Cp4.1LG11g02130Cucurbita pepo (Zucchini)cpemeB095
MELO3C003827Cp4.1LG02g07540Cucurbita pepo (Zucchini)cpemeB516
MELO3C003827CsGy2G019890Cucumber (Gy14) v2cgybmeB111
MELO3C003827Carg04049Silver-seed gourdcarmeB0956
MELO3C003827Carg08719Silver-seed gourdcarmeB0106
MELO3C003827Carg17151Silver-seed gourdcarmeB0928
MELO3C003827CsaV3_2G028790Cucumber (Chinese Long) v3cucmeB131
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C003827Bottle gourd (USVL1VR-Ls)lsimeB311
MELO3C003827Bottle gourd (USVL1VR-Ls)lsimeB480
MELO3C003827Cucumber (Gy14) v2cgybmeB185
MELO3C003827Cucumber (Gy14) v2cgybmeB427
MELO3C003827Silver-seed gourdcarmeB0409
MELO3C003827Cucumber (Chinese Long) v3cucmeB219
MELO3C003827Cucumber (Chinese Long) v3cucmeB498
MELO3C003827Watermelon (97103) v2mewmbB315
MELO3C003827Wax gourdmewgoB425
MELO3C003827Melon (DHL92) v3.5.1memeB118
MELO3C003827Melon (DHL92) v3.5.1memeB145
MELO3C003827Cucumber (Gy14) v1cgymeB202
MELO3C003827Cucumber (Gy14) v1cgymeB390
MELO3C003827Cucumber (Gy14) v1cgymeB559
MELO3C003827Cucurbita maxima (Rimu)cmameB603
MELO3C003827Cucurbita moschata (Rifu)cmomeB592
MELO3C003827Wild cucumber (PI 183967)cpimeB215
MELO3C003827Wild cucumber (PI 183967)cpimeB488
MELO3C003827Cucumber (Chinese Long) v2cumeB485
MELO3C003827Watermelon (Charleston Gray)mewcgB326
MELO3C003827Watermelon (97103) v1mewmB378
MELO3C003827Cucurbita pepo (Zucchini)cpemeB056
MELO3C003827Bottle gourd (USVL1VR-Ls)lsimeB142