CmaCh01G019150 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh01G019150
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionTranscription factor radialis-like protein
LocationCma_Chr01 : 12483805 .. 12484125 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTCAAGCTCTCGCACGACGGCACATGGCTTTTACTCATCCTGGACAATAAGGGAAAACAAGAAATTTGAGGAGGCATTAGCCTTCTATGACCAGGACACACCAGACCGCTTTGAGAACGTGGCGAGGGCTGTTGGTGGTGGGAAAACAGCGGAGGAAGTAAGAAGGCTCTATGAGTTACTGGTGCGAGATGTCAACCAAATCGAAGCTGGTCAAGTACAAATACCCCTCTACAAGAACGTTGGATATAATGGCGGACCACCAGAGGCAATATCCTACTTGCTGAATATCTCCTCTACGAAATCATTCCAGGTCTGA

mRNA sequence

ATGGCCTCAAGCTCTCGCACGACGGCACATGGCTTTTACTCATCCTGGACAATAAGGGAAAACAAGAAATTTGAGGAGGCATTAGCCTTCTATGACCAGGACACACCAGACCGCTTTGAGAACGTGGCGAGGGCTGTTGGTGGTGGGAAAACAGCGGAGGAAGTAAGAAGGCTCTATGAGTTACTGGTGCGAGATGTCAACCAAATCGAAGCTGGTCAAGTACAAATACCCCTCTACAAGAACGTTGGATATAATGGCGGACCACCAGAGGCAATATCCTACTTGCTGAATATCTCCTCTACGAAATCATTCCAGGTCTGA

Coding sequence (CDS)

ATGGCCTCAAGCTCTCGCACGACGGCACATGGCTTTTACTCATCCTGGACAATAAGGGAAAACAAGAAATTTGAGGAGGCATTAGCCTTCTATGACCAGGACACACCAGACCGCTTTGAGAACGTGGCGAGGGCTGTTGGTGGTGGGAAAACAGCGGAGGAAGTAAGAAGGCTCTATGAGTTACTGGTGCGAGATGTCAACCAAATCGAAGCTGGTCAAGTACAAATACCCCTCTACAAGAACGTTGGATATAATGGCGGACCACCAGAGGCAATATCCTACTTGCTGAATATCTCCTCTACGAAATCATTCCAGGTCTGA

Protein sequence

MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNQIEAGQVQIPLYKNVGYNGGPPEAISYLLNISSTKSFQV
Homology
[Close]
BLAST of CmaCh01G019150 vs. Swiss-Prot
Match: RADL3_ARATH (Protein RADIALIS-like 3 OS=Arabidopsis thaliana GN=RL3 PE=2 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.2e-19
Identity = 53/85 (62.35%), Postives = 66/85 (77.65%), Query Frame = 1 

Query: 1  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYE 60
          MAS+S +++    +SWT +ENK FE ALA YDQDTPDR+ NVARAV GGK+AEEVRR YE
Sbjct: 1  MASNSMSSS----ASWTRKENKLFERALATYDQDTPDRWHNVARAV-GGKSAEEVRRHYE 60

Query: 61 LLVRDVNQIEAGQVQIPLYKNVGYN 86
          LL+RDVN IE+G+   P Y++ G N
Sbjct: 61 LLIRDVNDIESGRYPHPNYRSNGNN 80

[Close]
BLAST of CmaCh01G019150 vs. Swiss-Prot
Match: RADL1_ARATH (Protein RADIALIS-like 1 OS=Arabidopsis thaliana GN=RL1 PE=2 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 7.0e-18
Identity = 48/83 (57.83%), Postives = 61/83 (73.49%), Query Frame = 1 

Query: 1  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYE 60
          MASSS ++      SWT ++NK FE+ALA YDQDTP+R++NVA+ V GGKT EEV+R YE
Sbjct: 1  MASSSMSSQSS--GSWTAKQNKAFEQALATYDQDTPNRWQNVAKVV-GGKTTEEVKRHYE 60

Query: 61 LLVRDVNQIEAGQVQIPLYKNVG 84
          LLV+D+N IE G V  P Y+  G
Sbjct: 61 LLVQDINSIENGHVPFPNYRTSG 80

[Close]
BLAST of CmaCh01G019150 vs. Swiss-Prot
Match: RADL4_ARATH (Protein RADIALIS-like 4 OS=Arabidopsis thaliana GN=RL4 PE=2 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 9.1e-18
Identity = 49/81 (60.49%), Postives = 63/81 (77.78%), Query Frame = 1 

Query: 1  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYE 60
          MASSS +T     SSWT RE+K+FE ALA +D+DTPDR++ +ARAV GGK+ EEV+R YE
Sbjct: 1  MASSSMST-----SSWTAREDKQFEMALAKFDKDTPDRWQKIARAV-GGKSTEEVKRHYE 60

Query: 61 LLVRDVNQIEAGQVQIPLYKN 82
          LL+RDVN IE+G+   P Y+N
Sbjct: 61 LLLRDVNDIESGRYPQPRYRN 75

[Close]
BLAST of CmaCh01G019150 vs. Swiss-Prot
Match: RADL2_ARATH (Protein RADIALIS-like 2 OS=Arabidopsis thaliana GN=RL2 PE=2 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.0e-17
Identity = 49/85 (57.65%), Postives = 58/85 (68.24%), Query Frame = 1 

Query: 1  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYE 60
          MAS S ++      SWT+++NK FE ALA YDQDTPDR+ NVARAV GGKT EE +R Y+
Sbjct: 1  MASGSMSSYGS--GSWTVKQNKAFERALAVYDQDTPDRWHNVARAV-GGKTPEEAKRQYD 60

Query: 61 LLVRDVNQIEAGQVQIPLYKNVGYN 86
          LLVRD+  IE G V  P YK    N
Sbjct: 61 LLVRDIESIENGHVPFPDYKTTTGN 82

[Close]
BLAST of CmaCh01G019150 vs. Swiss-Prot
Match: RADL6_ARATH (Protein RADIALIS-like 6 OS=Arabidopsis thaliana GN=RL6 PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.7e-16
Identity = 47/85 (55.29%), Postives = 60/85 (70.59%), Query Frame = 1 

Query: 1  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYE 60
          MAS+SR++     S WT  +NK FE ALA YD+DTPDR+ NVA+AV GGKT EEV+R Y+
Sbjct: 1  MASNSRSSI----SPWTFSQNKMFERALAVYDKDTPDRWHNVAKAV-GGKTVEEVKRHYD 60

Query: 61 LLVRDVNQIEAGQVQIPLYKNVGYN 86
          +LV D+  IE G+V +P YK    N
Sbjct: 61 ILVEDLINIETGRVPLPNYKTFESN 80

[Close]
BLAST of CmaCh01G019150 vs. TrEMBL
Match: A0A0A0LGL4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G857080 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 4.1e-33
Identity = 73/86 (84.88%), Postives = 78/86 (90.70%), Query Frame = 1 

Query: 1  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYE 60
          MASSS T+ HGFYSSWT +ENKKFEEALAF+D+DTPDRFE VARAVGGGKTAEE RRLYE
Sbjct: 1  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYE 60

Query: 61 LLVRDVNQIEAGQVQIPLYKNVGYNG 87
          LLVRDV +IEAGQVQIPLYKN G NG
Sbjct: 61 LLVRDVRKIEAGQVQIPLYKNAGCNG 86

[Close]
BLAST of CmaCh01G019150 vs. TrEMBL
Match: A0A103YCJ7_CYNCS (Homeodomain-like protein (Fragment) OS=Cynara cardunculus var. scolymus GN=Ccrd_015085 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.3e-20
Identity = 52/86 (60.47%), Postives = 71/86 (82.56%), Query Frame = 1 

Query: 1   MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYE 60
           MASSS T++    SSWT R+NK+FEEALA+Y++D+PDR+ N+ARAV GGK+ EEV+R YE
Sbjct: 115 MASSSMTSSRSSGSSWTPRQNKQFEEALAYYNKDSPDRWHNIARAV-GGKSVEEVKRHYE 174

Query: 61  LLVRDVNQIEAGQVQIPLYKNVGYNG 87
           +LVRD+ QIE+ QV +P Y+++G NG
Sbjct: 175 ILVRDIMQIESDQVPLPNYRDIGSNG 199

[Close]
BLAST of CmaCh01G019150 vs. TrEMBL
Match: A0A162A4Z7_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_019534 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.2e-19
Identity = 52/86 (60.47%), Postives = 69/86 (80.23%), Query Frame = 1 

Query: 1  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYE 60
          MAS+S T++    S+WT R+NK+FEEALA YD+DTPDR+ N+ARAV GGK+ EEV+R Y+
Sbjct: 1  MASNSITSSRNCGSTWTQRQNKQFEEALATYDRDTPDRWHNIARAV-GGKSTEEVKRHYD 60

Query: 61 LLVRDVNQIEAGQVQIPLYKNVGYNG 87
          +LV+D+ QIE+ QV +P YKN G NG
Sbjct: 61 ILVKDIMQIESDQVPLPNYKNTGGNG 85

[Close]
BLAST of CmaCh01G019150 vs. TrEMBL
Match: A0A068UIQ1_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00024780001 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 5.7e-19
Identity = 51/86 (59.30%), Postives = 68/86 (79.07%), Query Frame = 1 

Query: 1  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYE 60
          MASSS T++     SWT ++NK+FEEALA YD+DTPDR+ N+ARAV GGK+ EEVRR YE
Sbjct: 1  MASSSMTSSRSSSQSWTAKQNKQFEEALATYDKDTPDRWYNIARAV-GGKSEEEVRRHYE 60

Query: 61 LLVRDVNQIEAGQVQIPLYKNVGYNG 87
          +LV+D+ QIE+ QV +P Y+++  NG
Sbjct: 61 VLVKDIMQIESDQVPLPNYRSMASNG 85

[Close]
BLAST of CmaCh01G019150 vs. TrEMBL
Match: A0A067E8G3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034427mg PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 7.5e-19
Identity = 49/81 (60.49%), Postives = 65/81 (80.25%), Query Frame = 1 

Query: 14 SSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNQIEAGQ 73
          S+WT +ENK FE+ALA YD++TPDR++N+A+AVGGGKT EEV++ YE+LV D+N+IEAG+
Sbjct: 8  STWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLNRIEAGR 67

Query: 74 VQIPLYKNVG--YNGGPPEAI 93
          V IP YK+ G  YN    E I
Sbjct: 68 VPIPNYKSPGSSYNAANEERI 88

[Close]
BLAST of CmaCh01G019150 vs. TAIR10
Match: AT4G39250.1 (AT4G39250.1 RAD-like 1)

HSP 1 Score: 91.3 bits (225), Expect = 3.9e-19
Identity = 48/83 (57.83%), Postives = 61/83 (73.49%), Query Frame = 1 

Query: 1  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYE 60
          MASSS ++      SWT ++NK FE+ALA YDQDTP+R++NVA+ V GGKT EEV+R YE
Sbjct: 1  MASSSMSSQSS--GSWTAKQNKAFEQALATYDQDTPNRWQNVAKVV-GGKTTEEVKRHYE 60

Query: 61 LLVRDVNQIEAGQVQIPLYKNVG 84
          LLV+D+N IE G V  P Y+  G
Sbjct: 61 LLVQDINSIENGHVPFPNYRTSG 80

[Close]
BLAST of CmaCh01G019150 vs. TAIR10
Match: AT2G18328.1 (AT2G18328.1 RAD-like 4)

HSP 1 Score: 90.9 bits (224), Expect = 5.1e-19
Identity = 49/81 (60.49%), Postives = 63/81 (77.78%), Query Frame = 1 

Query: 1  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYE 60
          MASSS +T     SSWT RE+K+FE ALA +D+DTPDR++ +ARAV GGK+ EEV+R YE
Sbjct: 1  MASSSMST-----SSWTAREDKQFEMALAKFDKDTPDRWQKIARAV-GGKSTEEVKRHYE 60

Query: 61 LLVRDVNQIEAGQVQIPLYKN 82
          LL+RDVN IE+G+   P Y+N
Sbjct: 61 LLLRDVNDIESGRYPQPRYRN 75

[Close]
BLAST of CmaCh01G019150 vs. TAIR10
Match: AT2G21650.1 (AT2G21650.1 Homeodomain-like superfamily protein)

HSP 1 Score: 89.7 bits (221), Expect = 1.1e-18
Identity = 49/85 (57.65%), Postives = 58/85 (68.24%), Query Frame = 1 

Query: 1  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYE 60
          MAS S ++      SWT+++NK FE ALA YDQDTPDR+ NVARAV GGKT EE +R Y+
Sbjct: 1  MASGSMSSYGS--GSWTVKQNKAFERALAVYDQDTPDRWHNVARAV-GGKTPEEAKRQYD 60

Query: 61 LLVRDVNQIEAGQVQIPLYKNVGYN 86
          LLVRD+  IE G V  P YK    N
Sbjct: 61 LLVRDIESIENGHVPFPDYKTTTGN 82

[Close]
BLAST of CmaCh01G019150 vs. TAIR10
Match: AT1G75250.1 (AT1G75250.1 RAD-like 6)

HSP 1 Score: 86.7 bits (213), Expect = 9.7e-18
Identity = 47/85 (55.29%), Postives = 60/85 (70.59%), Query Frame = 1 

Query: 1  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYE 60
          MAS+SR++     S WT  +NK FE ALA YD+DTPDR+ NVA+AV GGKT EEV+R Y+
Sbjct: 1  MASNSRSSI----SPWTFSQNKMFERALAVYDKDTPDRWHNVAKAV-GGKTVEEVKRHYD 60

Query: 61 LLVRDVNQIEAGQVQIPLYKNVGYN 86
          +LV D+  IE G+V +P YK    N
Sbjct: 61 ILVEDLINIETGRVPLPNYKTFESN 80

[Close]
BLAST of CmaCh01G019150 vs. TAIR10
Match: AT1G19510.1 (AT1G19510.1 RAD-like 5)

HSP 1 Score: 85.1 bits (209), Expect = 2.8e-17
Identity = 46/82 (56.10%), Postives = 61/82 (74.39%), Query Frame = 1 

Query: 1  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYE 60
          MASSS +++    SSWT ++NK FE ALA YD+DTPDR++NVA+AV G K+AEEV+R Y+
Sbjct: 1  MASSSMSSS----SSWTSKQNKMFERALAVYDKDTPDRWQNVAKAV-GSKSAEEVKRHYD 60

Query: 61 LLVRDVNQIEAGQVQIPLYKNV 83
          +LV D+  IE   V +P YK V
Sbjct: 61 ILVEDLMNIEQDLVPLPKYKTV 77

[Close]
BLAST of CmaCh01G019150 vs. NCBI nr
Match: gi|659133100|ref|XP_008466554.1| (PREDICTED: protein RADIALIS-like 4 [Cucumis melo])

HSP 1 Score: 148.7 bits (374), Expect = 5.9e-33
Identity = 73/86 (84.88%), Postives = 78/86 (90.70%), Query Frame = 1 

Query: 1  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYE 60
          MASSS T+ HGFYSSWT +ENKKFEEALAF+D+DTPDRFE VARAVGGGKTAEE RRLYE
Sbjct: 1  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYE 60

Query: 61 LLVRDVNQIEAGQVQIPLYKNVGYNG 87
          LLVRDV +IEAGQVQIPLYKN G NG
Sbjct: 61 LLVRDVRKIEAGQVQIPLYKNAGCNG 86

[Close]
BLAST of CmaCh01G019150 vs. NCBI nr
Match: gi|747073426|ref|XP_011083673.1| (PREDICTED: protein RADIALIS-like 3 [Sesamum indicum])

HSP 1 Score: 108.2 bits (269), Expect = 8.8e-21
Identity = 55/85 (64.71%), Postives = 69/85 (81.18%), Query Frame = 1 

Query: 1  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYE 60
          MASSS T+A G  S+WT ++NK+FEEALA YD+DTPDR+ N+ARAV GGK+AEEVRR YE
Sbjct: 1  MASSSMTSARGSASAWTSKQNKQFEEALAMYDKDTPDRWHNIARAV-GGKSAEEVRRHYE 60

Query: 61 LLVRDVNQIEAGQVQIPLYKNVGYN 86
          +LV+D+ QIE  QV IP Y+ +G N
Sbjct: 61 ILVKDIMQIETDQVPIPNYRAMGSN 84

[Close]
BLAST of CmaCh01G019150 vs. NCBI nr
Match: gi|976921930|gb|KVI06567.1| (Homeodomain-like protein, partial [Cynara cardunculus var. scolymus])

HSP 1 Score: 106.3 bits (264), Expect = 3.3e-20
Identity = 52/86 (60.47%), Postives = 71/86 (82.56%), Query Frame = 1 

Query: 1   MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYE 60
           MASSS T++    SSWT R+NK+FEEALA+Y++D+PDR+ N+ARAV GGK+ EEV+R YE
Sbjct: 115 MASSSMTSSRSSGSSWTPRQNKQFEEALAYYNKDSPDRWHNIARAV-GGKSVEEVKRHYE 174

Query: 61  LLVRDVNQIEAGQVQIPLYKNVGYNG 87
           +LVRD+ QIE+ QV +P Y+++G NG
Sbjct: 175 ILVRDIMQIESDQVPLPNYRDIGSNG 199

[Close]
BLAST of CmaCh01G019150 vs. NCBI nr
Match: gi|1021038509|gb|KZM96292.1| (hypothetical protein DCAR_019534 [Daucus carota subsp. sativus])

HSP 1 Score: 104.0 bits (258), Expect = 1.7e-19
Identity = 52/86 (60.47%), Postives = 69/86 (80.23%), Query Frame = 1 

Query: 1  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYE 60
          MAS+S T++    S+WT R+NK+FEEALA YD+DTPDR+ N+ARAV GGK+ EEV+R Y+
Sbjct: 1  MASNSITSSRNCGSTWTQRQNKQFEEALATYDRDTPDRWHNIARAV-GGKSTEEVKRHYD 60

Query: 61 LLVRDVNQIEAGQVQIPLYKNVGYNG 87
          +LV+D+ QIE+ QV +P YKN G NG
Sbjct: 61 ILVKDIMQIESDQVPLPNYKNTGGNG 85

[Close]
BLAST of CmaCh01G019150 vs. NCBI nr
Match: gi|661889060|emb|CDP07503.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 101.7 bits (252), Expect = 8.2e-19
Identity = 51/86 (59.30%), Postives = 68/86 (79.07%), Query Frame = 1 

Query: 1  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYE 60
          MASSS T++     SWT ++NK+FEEALA YD+DTPDR+ N+ARAV GGK+ EEVRR YE
Sbjct: 1  MASSSMTSSRSSSQSWTAKQNKQFEEALATYDKDTPDRWYNIARAV-GGKSEEEVRRHYE 60

Query: 61 LLVRDVNQIEAGQVQIPLYKNVGYNG 87
          +LV+D+ QIE+ QV +P Y+++  NG
Sbjct: 61 VLVKDIMQIESDQVPLPNYRSMASNG 85

The following BLAST results are available for this feature:
BLAST of CmaCh01G019150 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RADL3_ARATH2.2e-1962.35Protein RADIALIS-like 3 OS=Arabidopsis thaliana GN=RL3 PE=2 SV=1[more]
RADL1_ARATH7.0e-1857.83Protein RADIALIS-like 1 OS=Arabidopsis thaliana GN=RL1 PE=2 SV=1[more]
RADL4_ARATH9.1e-1860.49Protein RADIALIS-like 4 OS=Arabidopsis thaliana GN=RL4 PE=2 SV=1[more]
RADL2_ARATH2.0e-1757.65Protein RADIALIS-like 2 OS=Arabidopsis thaliana GN=RL2 PE=2 SV=1[more]
RADL6_ARATH1.7e-1655.29Protein RADIALIS-like 6 OS=Arabidopsis thaliana GN=RL6 PE=2 SV=1[more]
BLAST of CmaCh01G019150 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LGL4_CUCSA4.1e-3384.88Uncharacterized protein OS=Cucumis sativus GN=Csa_3G857080 PE=4 SV=1[more]
A0A103YCJ7_CYNCS2.3e-2060.47Homeodomain-like protein (Fragment) OS=Cynara cardunculus var. scolymus GN=Ccrd_... [more]
A0A162A4Z7_DAUCA1.2e-1960.47Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_019534 PE=4 SV=1[more]
A0A068UIQ1_COFCA5.7e-1959.30Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00024780001 PE=4 SV=1[more]
A0A067E8G3_CITSI7.5e-1960.49Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034427mg PE=4 SV=1[more]
BLAST of CmaCh01G019150 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G39250.13.9e-1957.83 RAD-like 1[more]
AT2G18328.15.1e-1960.49 RAD-like 4[more]
AT2G21650.11.1e-1857.65 Homeodomain-like superfamily protein[more]
AT1G75250.19.7e-1855.29 RAD-like 6[more]
AT1G19510.12.8e-1756.10 RAD-like 5[more]
BLAST of CmaCh01G019150 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659133100|ref|XP_008466554.1|5.9e-3384.88PREDICTED: protein RADIALIS-like 4 [Cucumis melo][more]
gi|747073426|ref|XP_011083673.1|8.8e-2164.71PREDICTED: protein RADIALIS-like 3 [Sesamum indicum][more]
gi|976921930|gb|KVI06567.1|3.3e-2060.47Homeodomain-like protein, partial [Cynara cardunculus var. scolymus][more]
gi|1021038509|gb|KZM96292.1|1.7e-1960.47hypothetical protein DCAR_019534 [Daucus carota subsp. sativus][more]
gi|661889060|emb|CDP07503.1|8.2e-1959.30unnamed protein product [Coffea canephora][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001005SANT/Myb
IPR009057Homeobox-like_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh01G019150.1CmaCh01G019150.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001005SANT/Myb domainSMARTSM00717santcoord: 12..65
score: 0.
IPR009057Homeodomain-likeGENE3DG3DSA:1.10.10.60coord: 13..69
score: 1.
IPR009057Homeodomain-likeunknownSSF46689Homeodomain-likecoord: 15..70
score: 5.3
NoneNo IPR availablePANTHERPTHR24078DNAJ HOMOLOG SUBFAMILY C MEMBERcoord: 16..76
score: 2.4
NoneNo IPR availablePANTHERPTHR24078:SF177PROTEIN DNJ-23-RELATEDcoord: 16..76
score: 2.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh01G019150Cucsa.342440Cucumber (Gy14) v1cgycmaB0934
CmaCh01G019150Csa3G857080Cucumber (Chinese Long) v2cmacuB444
CmaCh01G019150MELO3C003827Melon (DHL92) v3.5.1cmameB424
CmaCh01G019150CSPI03G42770Wild cucumber (PI 183967)cmacpiB447
CmaCh01G019150CmoCh01G019780Cucurbita moschata (Rifu)cmacmoB469
CmaCh01G019150CmoCh12G004170Cucurbita moschata (Rifu)cmacmoB453
CmaCh01G019150CmoCh09G001500Cucurbita moschata (Rifu)cmacmoB435
CmaCh01G019150Cp4.1LG06g01000Cucurbita pepo (Zucchini)cmacpeB507
CmaCh01G019150Cp4.1LG11g02130Cucurbita pepo (Zucchini)cmacpeB461
CmaCh01G019150Cp4.1LG02g07540Cucurbita pepo (Zucchini)cmacpeB490
CmaCh01G019150Cp4.1LG07g04060Cucurbita pepo (Zucchini)cmacpeB516
CmaCh01G019150MELO3C003827.2Melon (DHL92) v3.6.1cmamedB487
CmaCh01G019150Cla97C05G100410Watermelon (97103) v2cmawmbB479
CmaCh01G019150Cla97C08G158570Watermelon (97103) v2cmawmbB504
CmaCh01G019150Bhi04G000152Wax gourdcmawgoB0571
CmaCh01G019150Carg04049Silver-seed gourdcarcmaB1352
CmaCh01G019150Carg08719Silver-seed gourdcarcmaB0136
CmaCh01G019150Carg17151Silver-seed gourdcarcmaB1293
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh01G019150Cucurbita pepo (Zucchini)cmacpeB459
CmaCh01G019150Cucurbita pepo (Zucchini)cmacpeB481
CmaCh01G019150Bottle gourd (USVL1VR-Ls)cmalsiB407
CmaCh01G019150Bottle gourd (USVL1VR-Ls)cmalsiB424
CmaCh01G019150Bottle gourd (USVL1VR-Ls)cmalsiB456
CmaCh01G019150Cucumber (Gy14) v2cgybcmaB199
CmaCh01G019150Cucumber (Gy14) v2cgybcmaB200
CmaCh01G019150Cucumber (Gy14) v2cgybcmaB358
CmaCh01G019150Cucumber (Gy14) v2cgybcmaB773
CmaCh01G019150Melon (DHL92) v3.6.1cmamedB475
CmaCh01G019150Melon (DHL92) v3.6.1cmamedB518
CmaCh01G019150Silver-seed gourdcarcmaB0252
CmaCh01G019150Silver-seed gourdcarcmaB1054
CmaCh01G019150Cucumber (Chinese Long) v3cmacucB0524
CmaCh01G019150Cucumber (Chinese Long) v3cmacucB0527
CmaCh01G019150Cucumber (Chinese Long) v3cmacucB0536
CmaCh01G019150Cucumber (Chinese Long) v3cmacucB0577
CmaCh01G019150Watermelon (97103) v2cmawmbB440
CmaCh01G019150Watermelon (97103) v2cmawmbB457
CmaCh01G019150Wax gourdcmawgoB0584
CmaCh01G019150Cucurbita maxima (Rimu)cmacmaB051
CmaCh01G019150Cucurbita maxima (Rimu)cmacmaB182
CmaCh01G019150Cucurbita moschata (Rifu)cmacmoB483
CmaCh01G019150Cucurbita maxima (Rimu)cmacmaB422
CmaCh01G019150Cucurbita maxima (Rimu)cmacmaB427
CmaCh01G019150Cucurbita maxima (Rimu)cmacmaB437
CmaCh01G019150Cucumber (Gy14) v1cgycmaB0342
CmaCh01G019150Cucumber (Gy14) v1cgycmaB0639
CmaCh01G019150Cucurbita moschata (Rifu)cmacmoB479
CmaCh01G019150Cucurbita moschata (Rifu)cmacmoB489
CmaCh01G019150Wild cucumber (PI 183967)cmacpiB440
CmaCh01G019150Wild cucumber (PI 183967)cmacpiB441
CmaCh01G019150Wild cucumber (PI 183967)cmacpiB487
CmaCh01G019150Cucumber (Chinese Long) v2cmacuB436
CmaCh01G019150Cucumber (Chinese Long) v2cmacuB438
CmaCh01G019150Cucumber (Chinese Long) v2cmacuB484
CmaCh01G019150Melon (DHL92) v3.5.1cmameB412
CmaCh01G019150Melon (DHL92) v3.5.1cmameB450
CmaCh01G019150Watermelon (Charleston Gray)cmawcgB396
CmaCh01G019150Watermelon (Charleston Gray)cmawcgB411
CmaCh01G019150Watermelon (Charleston Gray)cmawcgB435
CmaCh01G019150Watermelon (97103) v1cmawmB423
CmaCh01G019150Watermelon (97103) v1cmawmB440
CmaCh01G019150Watermelon (97103) v1cmawmB449