Carg17151 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg17151
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	protein RADIALIS-like 4
Location	Cucurbita_argyrosperma_scaffold_110 : 151053 .. 151373 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCAAGCTCTCGCACGACGGCACATGGCTTTTACTCATCCTGGACAATAAGGGAAAACAAAAAATTTGAGGAGGCATTAGCCTTCTATGACCAGGACACACCAGACCGCTTTGAGAACGTGGCGAGGGCTGTTGGTGGTGGGAAAACAGCTGAGGAAGTAAGAAGGCTCTATGAGTTACTGGTGCGAGATGTCAACAAAATCGAAGCTGGTCAAGTTCAAATACCCCTCTACAAGAACGTTGGATATAATGGCGGACCACCAGAGGCAATATCCTACTTGCTGAATATTTCCTCTACGAAATCATTCCAGGTCTGA

mRNA sequence

ATGGCCTCAAGCTCTCGCACGACGGCACATGGCTTTTACTCATCCTGGACAATAAGGGAAAACAAAAAATTTGAGGAGGCATTAGCCTTCTATGACCAGGACACACCAGACCGCTTTGAGAACGTGGCGAGGGCTGTTGGTGGTGGGAAAACAGCTGAGGAAGTAAGAAGGCTCTATGAGTTACTGGTGCGAGATGTCAACAAAATCGAAGCTGGTCAAGTTCAAATACCCCTCTACAAGAACGTTGGATATAATGGCGGACCACCAGAGGCAATATCCTACTTGCTGAATATTTCCTCTACGAAATCATTCCAGGTCTGA

Coding sequence (CDS)

ATGGCCTCAAGCTCTCGCACGACGGCACATGGCTTTTACTCATCCTGGACAATAAGGGAAAACAAAAAATTTGAGGAGGCATTAGCCTTCTATGACCAGGACACACCAGACCGCTTTGAGAACGTGGCGAGGGCTGTTGGTGGTGGGAAAACAGCTGAGGAAGTAAGAAGGCTCTATGAGTTACTGGTGCGAGATGTCAACAAAATCGAAGCTGGTCAAGTTCAAATACCCCTCTACAAGAACGTTGGATATAATGGCGGACCACCAGAGGCAATATCCTACTTGCTGAATATTTCCTCTACGAAATCATTCCAGGTCTGA

Protein sequence

MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVGYNGGPPEAISYLLNISSTKSFQV

Homology

[Close]

BLAST of Carg17151 vs. NCBI nr
Match: XP_023525025.1 (protein RADIALIS-like 4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 211.1 bits (536), Expect = 1.9e-51
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYE 60
           MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYE
Sbjct: 1   MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYE 60

Query: 61  LLVRDVNKIEAGQVQIPLYKNVGYNGGPPEAISYLLNISSTKSFQ 106
           LLVRDVNKIEAGQVQIPLYKNVGYNGGPPEAISYLLNISSTKSFQ
Sbjct: 61  LLVRDVNKIEAGQVQIPLYKNVGYNGGPPEAISYLLNISSTKSFQ 105

[Close]

BLAST of Carg17151 vs. NCBI nr
Match: XP_022981879.1 (protein RADIALIS-like 4 [Cucurbita maxima])

HSP 1 Score: 209.5 bits (532), Expect = 5.4e-51
Identity = 104/105 (99.05%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYE 60
           MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYE
Sbjct: 1   MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYE 60

Query: 61  LLVRDVNKIEAGQVQIPLYKNVGYNGGPPEAISYLLNISSTKSFQ 106
           LLVRDVN+IEAGQVQIPLYKNVGYNGGPPEAISYLLNISSTKSFQ
Sbjct: 61  LLVRDVNQIEAGQVQIPLYKNVGYNGGPPEAISYLLNISSTKSFQ 105

[Close]

BLAST of Carg17151 vs. NCBI nr
Match: XP_022940511.1 (protein RADIALIS-like 3 [Cucurbita moschata])

HSP 1 Score: 208.4 bits (529), Expect = 1.2e-50
Identity = 104/105 (99.05%), Postives = 104/105 (99.05%), Query Frame = 0


Query: 1   MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYE 60
           MASSSRTTAHGFYSSWT RENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYE
Sbjct: 1   MASSSRTTAHGFYSSWTKRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYE 60

Query: 61  LLVRDVNKIEAGQVQIPLYKNVGYNGGPPEAISYLLNISSTKSFQ 106
           LLVRDVNKIEAGQVQIPLYKNVGYNGGPPEAISYLLNISSTKSFQ
Sbjct: 61  LLVRDVNKIEAGQVQIPLYKNVGYNGGPPEAISYLLNISSTKSFQ 105

[Close]

BLAST of Carg17151 vs. NCBI nr
Match: XP_022155868.1 (protein RADIALIS-like 4 [Momordica charantia])

HSP 1 Score: 153.7 bits (387), Expect = 3.5e-34
Identity = 77/86 (89.53%), Postives = 78/86 (90.70%), Query Frame = 0


Query: 1  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYE 60
          MASSS T+A GFYSSWT RENKKFEEALAFYDQDTPDRFE VARAVGGGKTAEE RRLYE
Sbjct: 1  MASSSVTSARGFYSSWTKRENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYE 60

Query: 61 LLVRDVNKIEAGQVQIPLYKNVGYNG 87
          LL RDV KIEAGQVQIPLYKN GYNG
Sbjct: 61 LLERDVKKIEAGQVQIPLYKNTGYNG 86

[Close]

BLAST of Carg17151 vs. NCBI nr
Match: XP_008466554.1 (PREDICTED: protein RADIALIS-like 4 [Cucumis melo] >KGN59967.1 hypothetical protein Csa_3G857080 [Cucumis sativus])

HSP 1 Score: 150.2 bits (378), Expect = 3.9e-33
Identity = 74/86 (86.05%), Postives = 78/86 (90.70%), Query Frame = 0


Query: 1  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYE 60
          MASSS T+ HGFYSSWT +ENKKFEEALAF+D+DTPDRFE VARAVGGGKTAEE RRLYE
Sbjct: 1  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYE 60

Query: 61 LLVRDVNKIEAGQVQIPLYKNVGYNG 87
          LLVRDV KIEAGQVQIPLYKN G NG
Sbjct: 61 LLVRDVRKIEAGQVQIPLYKNAGCNG 86

[Close]

BLAST of Carg17151 vs. TAIR10
Match: AT4G39250.1 (RAD-like 1)

HSP 1 Score: 91.3 bits (225), Expect = 3.9e-19
Identity = 48/83 (57.83%), Postives = 61/83 (73.49%), Query Frame = 0


Query: 1  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYE 60
          MASSS ++      SWT ++NK FE+ALA YDQDTP+R++NVA+ V GGKT EEV+R YE
Sbjct: 1  MASSSMSSQSS--GSWTAKQNKAFEQALATYDQDTPNRWQNVAKVV-GGKTTEEVKRHYE 60

Query: 61 LLVRDVNKIEAGQVQIPLYKNVG 84
          LLV+D+N IE G V  P Y+  G
Sbjct: 61 LLVQDINSIENGHVPFPNYRTSG 80

[Close]

BLAST of Carg17151 vs. TAIR10
Match: AT2G18328.1 (RAD-like 4)

HSP 1 Score: 90.5 bits (223), Expect = 6.7e-19
Identity = 49/81 (60.49%), Postives = 63/81 (77.78%), Query Frame = 0


Query: 1  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYE 60
          MASSS +T     SSWT RE+K+FE ALA +D+DTPDR++ +ARAV GGK+ EEV+R YE
Sbjct: 1  MASSSMST-----SSWTAREDKQFEMALAKFDKDTPDRWQKIARAV-GGKSTEEVKRHYE 60

Query: 61 LLVRDVNKIEAGQVQIPLYKN 82
          LL+RDVN IE+G+   P Y+N
Sbjct: 61 LLLRDVNDIESGRYPQPRYRN 75

[Close]

BLAST of Carg17151 vs. TAIR10
Match: AT2G21650.1 (Homeodomain-like superfamily protein)

HSP 1 Score: 90.1 bits (222), Expect = 8.7e-19
Identity = 49/85 (57.65%), Postives = 58/85 (68.24%), Query Frame = 0


Query: 1  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYE 60
          MAS S ++      SWT+++NK FE ALA YDQDTPDR+ NVARAV GGKT EE +R Y+
Sbjct: 1  MASGSMSSYGS--GSWTVKQNKAFERALAVYDQDTPDRWHNVARAV-GGKTPEEAKRQYD 60

Query: 61 LLVRDVNKIEAGQVQIPLYKNVGYN 86
          LLVRD+  IE G V  P YK    N
Sbjct: 61 LLVRDIESIENGHVPFPDYKTTTGN 82

[Close]

BLAST of Carg17151 vs. TAIR10
Match: AT1G75250.1 (RAD-like 6)

HSP 1 Score: 86.7 bits (213), Expect = 9.7e-18
Identity = 47/85 (55.29%), Postives = 60/85 (70.59%), Query Frame = 0


Query: 1  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYE 60
          MAS+SR++     S WT  +NK FE ALA YD+DTPDR+ NVA+AV GGKT EEV+R Y+
Sbjct: 1  MASNSRSS----ISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAV-GGKTVEEVKRHYD 60

Query: 61 LLVRDVNKIEAGQVQIPLYKNVGYN 86
          +LV D+  IE G+V +P YK    N
Sbjct: 61 ILVEDLINIETGRVPLPNYKTFESN 80

[Close]

BLAST of Carg17151 vs. TAIR10
Match: AT1G19510.1 (RAD-like 5)

HSP 1 Score: 85.1 bits (209), Expect = 2.8e-17
Identity = 46/82 (56.10%), Postives = 61/82 (74.39%), Query Frame = 0


Query: 1  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYE 60
          MASSS +++    SSWT ++NK FE ALA YD+DTPDR++NVA+AV G K+AEEV+R Y+
Sbjct: 1  MASSSMSSS----SSWTSKQNKMFERALAVYDKDTPDRWQNVAKAV-GSKSAEEVKRHYD 60

Query: 61 LLVRDVNKIEAGQVQIPLYKNV 83
          +LV D+  IE   V +P YK V
Sbjct: 61 ILVEDLMNIEQDLVPLPKYKTV 77

[Close]

BLAST of Carg17151 vs. Swiss-Prot
Match: sp|Q6NNN0|RADL3_ARATH (Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 2.9e-19
Identity = 53/85 (62.35%), Postives = 66/85 (77.65%), Query Frame = 0


Query: 1  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYE 60
          MAS+S +++    +SWT +ENK FE ALA YDQDTPDR+ NVARAV GGK+AEEVRR YE
Sbjct: 1  MASNSMSSS----ASWTRKENKLFERALATYDQDTPDRWHNVARAV-GGKSAEEVRRHYE 60

Query: 61 LLVRDVNKIEAGQVQIPLYKNVGYN 86
          LL+RDVN IE+G+   P Y++ G N
Sbjct: 61 LLIRDVNDIESGRYPHPNYRSNGNN 80

[Close]

BLAST of Carg17151 vs. Swiss-Prot
Match: sp|F4JVB8|RADL1_ARATH (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 7.1e-18
Identity = 48/83 (57.83%), Postives = 61/83 (73.49%), Query Frame = 0


Query: 1  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYE 60
          MASSS ++      SWT ++NK FE+ALA YDQDTP+R++NVA+ V GGKT EEV+R YE
Sbjct: 1  MASSSMSSQSS--GSWTAKQNKAFEQALATYDQDTPNRWQNVAKVV-GGKTTEEVKRHYE 60

Query: 61 LLVRDVNKIEAGQVQIPLYKNVG 84
          LLV+D+N IE G V  P Y+  G
Sbjct: 61 LLVQDINSIENGHVPFPNYRTSG 80

[Close]

BLAST of Carg17151 vs. Swiss-Prot
Match: sp|Q1G3C4|RADL4_ARATH (Protein RADIALIS-like 4 OS=Arabidopsis thaliana OX=3702 GN=RL4 PE=2 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.2e-17
Identity = 49/81 (60.49%), Postives = 63/81 (77.78%), Query Frame = 0


Query: 1  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYE 60
          MASSS +T     SSWT RE+K+FE ALA +D+DTPDR++ +ARAV GGK+ EEV+R YE
Sbjct: 1  MASSSMST-----SSWTAREDKQFEMALAKFDKDTPDRWQKIARAV-GGKSTEEVKRHYE 60

Query: 61 LLVRDVNKIEAGQVQIPLYKN 82
          LL+RDVN IE+G+   P Y+N
Sbjct: 61 LLLRDVNDIESGRYPQPRYRN 75

[Close]

BLAST of Carg17151 vs. Swiss-Prot
Match: sp|Q9SIJ5|RADL2_ARATH (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.6e-17
Identity = 49/85 (57.65%), Postives = 58/85 (68.24%), Query Frame = 0


Query: 1  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYE 60
          MAS S ++      SWT+++NK FE ALA YDQDTPDR+ NVARAV GGKT EE +R Y+
Sbjct: 1  MASGSMSSYGS--GSWTVKQNKAFERALAVYDQDTPDRWHNVARAV-GGKTPEEAKRQYD 60

Query: 61 LLVRDVNKIEAGQVQIPLYKNVGYN 86
          LLVRD+  IE G V  P YK    N
Sbjct: 61 LLVRDIESIENGHVPFPDYKTTTGN 82

[Close]

BLAST of Carg17151 vs. Swiss-Prot
Match: sp|Q1A173|RADL6_ARATH (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.7e-16
Identity = 47/85 (55.29%), Postives = 60/85 (70.59%), Query Frame = 0


Query: 1  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYE 60
          MAS+SR++     S WT  +NK FE ALA YD+DTPDR+ NVA+AV GGKT EEV+R Y+
Sbjct: 1  MASNSRSS----ISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAV-GGKTVEEVKRHYD 60

Query: 61 LLVRDVNKIEAGQVQIPLYKNVGYN 86
          +LV D+  IE G+V +P YK    N
Sbjct: 61 ILVEDLINIETGRVPLPNYKTFESN 80

[Close]

BLAST of Carg17151 vs. TrEMBL
Match: tr|A0A1S3CRN8|A0A1S3CRN8_CUCME (protein RADIALIS-like 4 OS=Cucumis melo OX=3656 GN=LOC103503940 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 2.6e-33
Identity = 74/86 (86.05%), Postives = 78/86 (90.70%), Query Frame = 0


Query: 1  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYE 60
          MASSS T+ HGFYSSWT +ENKKFEEALAF+D+DTPDRFE VARAVGGGKTAEE RRLYE
Sbjct: 1  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYE 60

Query: 61 LLVRDVNKIEAGQVQIPLYKNVGYNG 87
          LLVRDV KIEAGQVQIPLYKN G NG
Sbjct: 61 LLVRDVRKIEAGQVQIPLYKNAGCNG 86

[Close]

BLAST of Carg17151 vs. TrEMBL
Match: tr|A0A0A0LGL4|A0A0A0LGL4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G857080 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 2.6e-33
Identity = 74/86 (86.05%), Postives = 78/86 (90.70%), Query Frame = 0


Query: 1  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYE 60
          MASSS T+ HGFYSSWT +ENKKFEEALAF+D+DTPDRFE VARAVGGGKTAEE RRLYE
Sbjct: 1  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYE 60

Query: 61 LLVRDVNKIEAGQVQIPLYKNVGYNG 87
          LLVRDV KIEAGQVQIPLYKN G NG
Sbjct: 61 LLVRDVRKIEAGQVQIPLYKNAGCNG 86

[Close]

BLAST of Carg17151 vs. TrEMBL
Match: tr|A0A2U1NXQ6|A0A2U1NXQ6_ARTAN (Protein RADIALIS-like 3 OS=Artemisia annua OX=35608 GN=CTI12_AA216430 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 4.3e-20
Identity = 50/86 (58.14%), Postives = 72/86 (83.72%), Query Frame = 0


Query: 1  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYE 60
          MAS+S T++    SSWT R+NK+FEEALA+Y++DTPDR+ N+ARAV GGK+ +EV+R YE
Sbjct: 1  MASNSMTSSRSSGSSWTSRQNKQFEEALAYYNKDTPDRWHNIARAV-GGKSVDEVKRHYE 60

Query: 61 LLVRDVNKIEAGQVQIPLYKNVGYNG 87
          +LVRD+ +IE+ QV +P+Y+++G NG
Sbjct: 61 ILVRDIMQIESDQVPLPIYRDIGSNG 85

[Close]

BLAST of Carg17151 vs. TrEMBL
Match: tr|A0A103YCJ7|A0A103YCJ7_CYNCS (Homeodomain-like protein (Fragment) OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_015085 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.2e-19
Identity = 51/86 (59.30%), Postives = 71/86 (82.56%), Query Frame = 0


Query: 1   MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYE 60
           MASSS T++    SSWT R+NK+FEEALA+Y++D+PDR+ N+ARAV GGK+ EEV+R YE
Sbjct: 115 MASSSMTSSRSSGSSWTPRQNKQFEEALAYYNKDSPDRWHNIARAV-GGKSVEEVKRHYE 174

Query: 61  LLVRDVNKIEAGQVQIPLYKNVGYNG 87
           +LVRD+ +IE+ QV +P Y+++G NG
Sbjct: 175 ILVRDIMQIESDQVPLPNYRDIGSNG 199

[Close]

BLAST of Carg17151 vs. TrEMBL
Match: tr|A0A1Y3BTL9|A0A1Y3BTL9_HELAN (Putative RAD-like 6 OS=Helianthus annuus OX=4232 GN=ATRL6 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.8e-19
Identity = 50/86 (58.14%), Postives = 71/86 (82.56%), Query Frame = 0


Query: 1  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYE 60
          MASSS T++    S+WT R+NK+FEEALA+Y++D+PDR+ N+ARAV GGK+ EEV+R YE
Sbjct: 1  MASSSMTSSRSSGSTWTQRQNKQFEEALAYYNKDSPDRWHNIARAV-GGKSVEEVKRHYE 60

Query: 61 LLVRDVNKIEAGQVQIPLYKNVGYNG 87
          +LVRD+ +IE+ QV +P Y+++G NG
Sbjct: 61 ILVRDIMQIESDQVPLPNYRSIGSNG 85

The following BLAST results are available for this feature:

BLAST of Carg17151 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023525025.1	1.9e-51	100.00	protein RADIALIS-like 4 [Cucurbita pepo subsp. pepo]	[more]
XP_022981879.1	5.4e-51	99.05	protein RADIALIS-like 4 [Cucurbita maxima]	[more]
XP_022940511.1	1.2e-50	99.05	protein RADIALIS-like 3 [Cucurbita moschata]	[more]
XP_022155868.1	3.5e-34	89.53	protein RADIALIS-like 4 [Momordica charantia]	[more]
XP_008466554.1	3.9e-33	86.05	PREDICTED: protein RADIALIS-like 4 [Cucumis melo] >KGN59967.1 hypothetical prote...	[more]

BLAST of Carg17151 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G39250.1	3.9e-19	57.83	RAD-like 1	[more]
AT2G18328.1	6.7e-19	60.49	RAD-like 4	[more]
AT2G21650.1	8.7e-19	57.65	Homeodomain-like superfamily protein	[more]
AT1G75250.1	9.7e-18	55.29	RAD-like 6	[more]
AT1G19510.1	2.8e-17	56.10	RAD-like 5	[more]

BLAST of Carg17151 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q6NNN0\|RADL3_ARATH	2.9e-19	62.35	Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1	[more]
sp\|F4JVB8\|RADL1_ARATH	7.1e-18	57.83	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]
sp\|Q1G3C4\|RADL4_ARATH	1.2e-17	60.49	Protein RADIALIS-like 4 OS=Arabidopsis thaliana OX=3702 GN=RL4 PE=2 SV=1	[more]
sp\|Q9SIJ5\|RADL2_ARATH	1.6e-17	57.65	Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1	[more]
sp\|Q1A173\|RADL6_ARATH	1.7e-16	55.29	Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1	[more]

BLAST of Carg17151 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CRN8\|A0A1S3CRN8_CUCME	2.6e-33	86.05	protein RADIALIS-like 4 OS=Cucumis melo OX=3656 GN=LOC103503940 PE=4 SV=1	[more]
tr\|A0A0A0LGL4\|A0A0A0LGL4_CUCSA	2.6e-33	86.05	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G857080 PE=4 SV=1	[more]
tr\|A0A2U1NXQ6\|A0A2U1NXQ6_ARTAN	4.3e-20	58.14	Protein RADIALIS-like 3 OS=Artemisia annua OX=35608 GN=CTI12_AA216430 PE=4 SV=1	[more]
tr\|A0A103YCJ7\|A0A103YCJ7_CYNCS	1.2e-19	59.30	Homeodomain-like protein (Fragment) OS=Cynara cardunculus var. scolymus OX=59895...	[more]
tr\|A0A1Y3BTL9\|A0A1Y3BTL9_HELAN	2.8e-19	58.14	Putative RAD-like 6 OS=Helianthus annuus OX=4232 GN=ATRL6 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR009057	Homeobox-like_sf
IPR001005	SANT/Myb

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg17151-RA	Carg17151-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 12..65 e-value: 0.0088 score: 25.2
None	No IPR available	GENE3D	G3DSA:1.10.10.60		coord: 12..76 e-value: 7.1E-16 score: 59.8
None	No IPR available	PANTHER	PTHR43952	FAMILY NOT NAMED	coord: 1..83
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	SSF46689	Homeodomain-like	coord: 14..70

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg17151	Csa3G857080	Cucumber (Chinese Long) v2	carcuB0961
Carg17151	MELO3C003827	Melon (DHL92) v3.5.1	carmeB0928
Carg17151	CSPI03G42770	Wild cucumber (PI 183967)	carcpiB0984
Carg17151	Cucsa.342440	Cucumber (Gy14) v1	carcgyB1066
Carg17151	CmaCh01G019150	Cucurbita maxima (Rimu)	carcmaB1293
Carg17151	CmoCh01G019780	Cucurbita moschata (Rifu)	carcmoB1263
Carg17151	Lsi04G016700	Bottle gourd (USVL1VR-Ls)	carlsiB863
Carg17151	Cp4.1LG02g07540	Cucurbita pepo (Zucchini)	carcpeB1309
Carg17151	MELO3C003827.2	Melon (DHL92) v3.6.1	carmedB0934
Carg17151	CsaV3_3G045220	Cucumber (Chinese Long) v3	carcucB0989
Carg17151	Cla97C05G100410	Watermelon (97103) v2	carwmbB0994
Carg17151	Cla97C08G158570	Watermelon (97103) v2	carwmbB0996
Carg17151	Bhi04G000152	Wax gourd	carwgoB1091

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg17151	Silver-seed gourd	carcarB125
Carg17151	Silver-seed gourd	carcarB226
Carg17151	Silver-seed gourd	carcarB429
Carg17151	Silver-seed gourd	carcarB603
Carg17151	Silver-seed gourd	carcarB647
Carg17151	Cucumber (Gy14) v2	carcgybB0933
Carg17151	Cucumber (Gy14) v2	carcgybB0934
Carg17151	Cucumber (Gy14) v2	carcgybB0935
Carg17151	Cucumber (Gy14) v1	carcgyB1063
Carg17151	Cucumber (Gy14) v1	carcgyB1065
Carg17151	Cucurbita maxima (Rimu)	carcmaB1291
Carg17151	Cucurbita maxima (Rimu)	carcmaB1292
Carg17151	Cucurbita maxima (Rimu)	carcmaB1294
Carg17151	Cucurbita maxima (Rimu)	carcmaB1295
Carg17151	Cucurbita moschata (Rifu)	carcmoB1261
Carg17151	Cucurbita moschata (Rifu)	carcmoB1262
Carg17151	Cucurbita moschata (Rifu)	carcmoB1264
Carg17151	Cucurbita moschata (Rifu)	carcmoB1265
Carg17151	Cucurbita moschata (Rifu)	carcmoB1266
Carg17151	Cucurbita pepo (Zucchini)	carcpeB1306
Carg17151	Cucurbita pepo (Zucchini)	carcpeB1307
Carg17151	Cucurbita pepo (Zucchini)	carcpeB1308
Carg17151	Cucurbita pepo (Zucchini)	carcpeB1310
Carg17151	Cucurbita pepo (Zucchini)	carcpeB1311
Carg17151	Wild cucumber (PI 183967)	carcpiB0983
Carg17151	Wild cucumber (PI 183967)	carcpiB0985
Carg17151	Cucumber (Chinese Long) v2	carcuB0960
Carg17151	Cucumber (Chinese Long) v2	carcuB0962
Carg17151	Cucumber (Chinese Long) v3	carcucB0988
Carg17151	Cucumber (Chinese Long) v3	carcucB0990
Carg17151	Bottle gourd (USVL1VR-Ls)	carlsiB864
Carg17151	Bottle gourd (USVL1VR-Ls)	carlsiB862
Carg17151	Melon (DHL92) v3.5.1	carmeB0927
Carg17151	Melon (DHL92) v3.5.1	carmeB0929
Carg17151	Melon (DHL92) v3.6.1	carmedB0933
Carg17151	Melon (DHL92) v3.6.1	carmedB0935
Carg17151	Watermelon (Charleston Gray)	carwcgB0920
Carg17151	Watermelon (Charleston Gray)	carwcgB0919
Carg17151	Watermelon (Charleston Gray)	carwcgB0922
Carg17151	Watermelon (97103) v1	carwmB0944
Carg17151	Watermelon (97103) v1	carwmB0945
Carg17151	Watermelon (97103) v1	carwmB0947
Carg17151	Watermelon (97103) v2	carwmbB0992
Carg17151	Watermelon (97103) v2	carwmbB0993
Carg17151	Wax gourd	carwgoB1093
Carg17151	Wax gourd	carwgoB1094