Carg17151-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg17151-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	protein RADIALIS-like 4
Location	Cucurbita_argyrosperma_scaffold_110 : 151053 .. 151373 (-)
Sequence length	321

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCAAGCTCTCGCACGACGGCACATGGCTTTTACTCATCCTGGACAATAAGGGAAAACAAAAAATTTGAGGAGGCATTAGCCTTCTATGACCAGGACACACCAGACCGCTTTGAGAACGTGGCGAGGGCTGTTGGTGGTGGGAAAACAGCTGAGGAAGTAAGAAGGCTCTATGAGTTACTGGTGCGAGATGTCAACAAAATCGAAGCTGGTCAAGTTCAAATACCCCTCTACAAGAACGTTGGATATAATGGCGGACCACCAGAGGCAATATCCTACTTGCTGAATATTTCCTCTACGAAATCATTCCAGGTCTGA

mRNA sequence

ATGGCCTCAAGCTCTCGCACGACGGCACATGGCTTTTACTCATCCTGGACAATAAGGGAAAACAAAAAATTTGAGGAGGCATTAGCCTTCTATGACCAGGACACACCAGACCGCTTTGAGAACGTGGCGAGGGCTGTTGGTGGTGGGAAAACAGCTGAGGAAGTAAGAAGGCTCTATGAGTTACTGGTGCGAGATGTCAACAAAATCGAAGCTGGTCAAGTTCAAATACCCCTCTACAAGAACGTTGGATATAATGGCGGACCACCAGAGGCAATATCCTACTTGCTGAATATTTCCTCTACGAAATCATTCCAGGTCTGA

Coding sequence (CDS)

ATGGCCTCAAGCTCTCGCACGACGGCACATGGCTTTTACTCATCCTGGACAATAAGGGAAAACAAAAAATTTGAGGAGGCATTAGCCTTCTATGACCAGGACACACCAGACCGCTTTGAGAACGTGGCGAGGGCTGTTGGTGGTGGGAAAACAGCTGAGGAAGTAAGAAGGCTCTATGAGTTACTGGTGCGAGATGTCAACAAAATCGAAGCTGGTCAAGTTCAAATACCCCTCTACAAGAACGTTGGATATAATGGCGGACCACCAGAGGCAATATCCTACTTGCTGAATATTTCCTCTACGAAATCATTCCAGGTCTGA

Protein sequence

MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVGYNGGPPEAISYLLNISSTKSFQV

Homology

[Close]

BLAST of Carg17151-RA vs. NCBI nr
Match: XP_023525025.1 (protein RADIALIS-like 4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 211.1 bits (536), Expect = 1.9e-51
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYE 60
           MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYE
Sbjct: 1   MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYE 60

Query: 61  LLVRDVNKIEAGQVQIPLYKNVGYNGGPPEAISYLLNISSTKSFQ 106
           LLVRDVNKIEAGQVQIPLYKNVGYNGGPPEAISYLLNISSTKSFQ
Sbjct: 61  LLVRDVNKIEAGQVQIPLYKNVGYNGGPPEAISYLLNISSTKSFQ 105

[Close]

BLAST of Carg17151-RA vs. NCBI nr
Match: XP_022981879.1 (protein RADIALIS-like 4 [Cucurbita maxima])

HSP 1 Score: 209.5 bits (532), Expect = 5.4e-51
Identity = 104/105 (99.05%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYE 60
           MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYE
Sbjct: 1   MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYE 60

Query: 61  LLVRDVNKIEAGQVQIPLYKNVGYNGGPPEAISYLLNISSTKSFQ 106
           LLVRDVN+IEAGQVQIPLYKNVGYNGGPPEAISYLLNISSTKSFQ
Sbjct: 61  LLVRDVNQIEAGQVQIPLYKNVGYNGGPPEAISYLLNISSTKSFQ 105

[Close]

BLAST of Carg17151-RA vs. NCBI nr
Match: XP_022940511.1 (protein RADIALIS-like 3 [Cucurbita moschata])

HSP 1 Score: 208.4 bits (529), Expect = 1.2e-50
Identity = 104/105 (99.05%), Postives = 104/105 (99.05%), Query Frame = 0


Query: 1   MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYE 60
           MASSSRTTAHGFYSSWT RENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYE
Sbjct: 1   MASSSRTTAHGFYSSWTKRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYE 60

Query: 61  LLVRDVNKIEAGQVQIPLYKNVGYNGGPPEAISYLLNISSTKSFQ 106
           LLVRDVNKIEAGQVQIPLYKNVGYNGGPPEAISYLLNISSTKSFQ
Sbjct: 61  LLVRDVNKIEAGQVQIPLYKNVGYNGGPPEAISYLLNISSTKSFQ 105

[Close]

BLAST of Carg17151-RA vs. NCBI nr
Match: XP_022155868.1 (protein RADIALIS-like 4 [Momordica charantia])

HSP 1 Score: 153.7 bits (387), Expect = 3.5e-34
Identity = 77/86 (89.53%), Postives = 78/86 (90.70%), Query Frame = 0


Query: 1  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYE 60
          MASSS T+A GFYSSWT RENKKFEEALAFYDQDTPDRFE VARAVGGGKTAEE RRLYE
Sbjct: 1  MASSSVTSARGFYSSWTKRENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYE 60

Query: 61 LLVRDVNKIEAGQVQIPLYKNVGYNG 87
          LL RDV KIEAGQVQIPLYKN GYNG
Sbjct: 61 LLERDVKKIEAGQVQIPLYKNTGYNG 86

[Close]

BLAST of Carg17151-RA vs. NCBI nr
Match: XP_008466554.1 (PREDICTED: protein RADIALIS-like 4 [Cucumis melo] >KGN59967.1 hypothetical protein Csa_3G857080 [Cucumis sativus])

HSP 1 Score: 150.2 bits (378), Expect = 3.9e-33
Identity = 74/86 (86.05%), Postives = 78/86 (90.70%), Query Frame = 0


Query: 1  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYE 60
          MASSS T+ HGFYSSWT +ENKKFEEALAF+D+DTPDRFE VARAVGGGKTAEE RRLYE
Sbjct: 1  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYE 60

Query: 61 LLVRDVNKIEAGQVQIPLYKNVGYNG 87
          LLVRDV KIEAGQVQIPLYKN G NG
Sbjct: 61 LLVRDVRKIEAGQVQIPLYKNAGCNG 86

[Close]

BLAST of Carg17151-RA vs. TAIR10
Match: AT4G39250.1 (RAD-like 1)

HSP 1 Score: 91.3 bits (225), Expect = 3.9e-19
Identity = 48/83 (57.83%), Postives = 61/83 (73.49%), Query Frame = 0


Query: 1  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYE 60
          MASSS ++      SWT ++NK FE+ALA YDQDTP+R++NVA+ V GGKT EEV+R YE
Sbjct: 1  MASSSMSSQSS--GSWTAKQNKAFEQALATYDQDTPNRWQNVAKVV-GGKTTEEVKRHYE 60

Query: 61 LLVRDVNKIEAGQVQIPLYKNVG 84
          LLV+D+N IE G V  P Y+  G
Sbjct: 61 LLVQDINSIENGHVPFPNYRTSG 80

[Close]

BLAST of Carg17151-RA vs. TAIR10
Match: AT2G18328.1 (RAD-like 4)

HSP 1 Score: 90.5 bits (223), Expect = 6.7e-19
Identity = 49/81 (60.49%), Postives = 63/81 (77.78%), Query Frame = 0


Query: 1  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYE 60
          MASSS +T     SSWT RE+K+FE ALA +D+DTPDR++ +ARAV GGK+ EEV+R YE
Sbjct: 1  MASSSMST-----SSWTAREDKQFEMALAKFDKDTPDRWQKIARAV-GGKSTEEVKRHYE 60

Query: 61 LLVRDVNKIEAGQVQIPLYKN 82
          LL+RDVN IE+G+   P Y+N
Sbjct: 61 LLLRDVNDIESGRYPQPRYRN 75

[Close]

BLAST of Carg17151-RA vs. TAIR10
Match: AT2G21650.1 (Homeodomain-like superfamily protein)

HSP 1 Score: 90.1 bits (222), Expect = 8.7e-19
Identity = 49/85 (57.65%), Postives = 58/85 (68.24%), Query Frame = 0


Query: 1  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYE 60
          MAS S ++      SWT+++NK FE ALA YDQDTPDR+ NVARAV GGKT EE +R Y+
Sbjct: 1  MASGSMSSYGS--GSWTVKQNKAFERALAVYDQDTPDRWHNVARAV-GGKTPEEAKRQYD 60

Query: 61 LLVRDVNKIEAGQVQIPLYKNVGYN 86
          LLVRD+  IE G V  P YK    N
Sbjct: 61 LLVRDIESIENGHVPFPDYKTTTGN 82

[Close]

BLAST of Carg17151-RA vs. TAIR10
Match: AT1G75250.1 (RAD-like 6)

HSP 1 Score: 86.7 bits (213), Expect = 9.7e-18
Identity = 47/85 (55.29%), Postives = 60/85 (70.59%), Query Frame = 0


Query: 1  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYE 60
          MAS+SR++     S WT  +NK FE ALA YD+DTPDR+ NVA+AV GGKT EEV+R Y+
Sbjct: 1  MASNSRSS----ISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAV-GGKTVEEVKRHYD 60

Query: 61 LLVRDVNKIEAGQVQIPLYKNVGYN 86
          +LV D+  IE G+V +P YK    N
Sbjct: 61 ILVEDLINIETGRVPLPNYKTFESN 80

[Close]

BLAST of Carg17151-RA vs. TAIR10
Match: AT1G19510.1 (RAD-like 5)

HSP 1 Score: 85.1 bits (209), Expect = 2.8e-17
Identity = 46/82 (56.10%), Postives = 61/82 (74.39%), Query Frame = 0


Query: 1  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYE 60
          MASSS +++    SSWT ++NK FE ALA YD+DTPDR++NVA+AV G K+AEEV+R Y+
Sbjct: 1  MASSSMSSS----SSWTSKQNKMFERALAVYDKDTPDRWQNVAKAV-GSKSAEEVKRHYD 60

Query: 61 LLVRDVNKIEAGQVQIPLYKNV 83
          +LV D+  IE   V +P YK V
Sbjct: 61 ILVEDLMNIEQDLVPLPKYKTV 77

[Close]

BLAST of Carg17151-RA vs. Swiss-Prot
Match: sp|Q6NNN0|RADL3_ARATH (Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 2.9e-19
Identity = 53/85 (62.35%), Postives = 66/85 (77.65%), Query Frame = 0


Query: 1  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYE 60
          MAS+S +++    +SWT +ENK FE ALA YDQDTPDR+ NVARAV GGK+AEEVRR YE
Sbjct: 1  MASNSMSSS----ASWTRKENKLFERALATYDQDTPDRWHNVARAV-GGKSAEEVRRHYE 60

Query: 61 LLVRDVNKIEAGQVQIPLYKNVGYN 86
          LL+RDVN IE+G+   P Y++ G N
Sbjct: 61 LLIRDVNDIESGRYPHPNYRSNGNN 80

[Close]

BLAST of Carg17151-RA vs. Swiss-Prot
Match: sp|F4JVB8|RADL1_ARATH (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 7.1e-18
Identity = 48/83 (57.83%), Postives = 61/83 (73.49%), Query Frame = 0


Query: 1  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYE 60
          MASSS ++      SWT ++NK FE+ALA YDQDTP+R++NVA+ V GGKT EEV+R YE
Sbjct: 1  MASSSMSSQSS--GSWTAKQNKAFEQALATYDQDTPNRWQNVAKVV-GGKTTEEVKRHYE 60

Query: 61 LLVRDVNKIEAGQVQIPLYKNVG 84
          LLV+D+N IE G V  P Y+  G
Sbjct: 61 LLVQDINSIENGHVPFPNYRTSG 80

[Close]

BLAST of Carg17151-RA vs. Swiss-Prot
Match: sp|Q1G3C4|RADL4_ARATH (Protein RADIALIS-like 4 OS=Arabidopsis thaliana OX=3702 GN=RL4 PE=2 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.2e-17
Identity = 49/81 (60.49%), Postives = 63/81 (77.78%), Query Frame = 0


Query: 1  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYE 60
          MASSS +T     SSWT RE+K+FE ALA +D+DTPDR++ +ARAV GGK+ EEV+R YE
Sbjct: 1  MASSSMST-----SSWTAREDKQFEMALAKFDKDTPDRWQKIARAV-GGKSTEEVKRHYE 60

Query: 61 LLVRDVNKIEAGQVQIPLYKN 82
          LL+RDVN IE+G+   P Y+N
Sbjct: 61 LLLRDVNDIESGRYPQPRYRN 75

[Close]

BLAST of Carg17151-RA vs. Swiss-Prot
Match: sp|Q9SIJ5|RADL2_ARATH (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.6e-17
Identity = 49/85 (57.65%), Postives = 58/85 (68.24%), Query Frame = 0


Query: 1  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYE 60
          MAS S ++      SWT+++NK FE ALA YDQDTPDR+ NVARAV GGKT EE +R Y+
Sbjct: 1  MASGSMSSYGS--GSWTVKQNKAFERALAVYDQDTPDRWHNVARAV-GGKTPEEAKRQYD 60

Query: 61 LLVRDVNKIEAGQVQIPLYKNVGYN 86
          LLVRD+  IE G V  P YK    N
Sbjct: 61 LLVRDIESIENGHVPFPDYKTTTGN 82

[Close]

BLAST of Carg17151-RA vs. Swiss-Prot
Match: sp|Q1A173|RADL6_ARATH (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.7e-16
Identity = 47/85 (55.29%), Postives = 60/85 (70.59%), Query Frame = 0


Query: 1  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYE 60
          MAS+SR++     S WT  +NK FE ALA YD+DTPDR+ NVA+AV GGKT EEV+R Y+
Sbjct: 1  MASNSRSS----ISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAV-GGKTVEEVKRHYD 60

Query: 61 LLVRDVNKIEAGQVQIPLYKNVGYN 86
          +LV D+  IE G+V +P YK    N
Sbjct: 61 ILVEDLINIETGRVPLPNYKTFESN 80

[Close]

BLAST of Carg17151-RA vs. TrEMBL
Match: tr|A0A1S3CRN8|A0A1S3CRN8_CUCME (protein RADIALIS-like 4 OS=Cucumis melo OX=3656 GN=LOC103503940 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 2.6e-33
Identity = 74/86 (86.05%), Postives = 78/86 (90.70%), Query Frame = 0


Query: 1  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYE 60
          MASSS T+ HGFYSSWT +ENKKFEEALAF+D+DTPDRFE VARAVGGGKTAEE RRLYE
Sbjct: 1  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYE 60

Query: 61 LLVRDVNKIEAGQVQIPLYKNVGYNG 87
          LLVRDV KIEAGQVQIPLYKN G NG
Sbjct: 61 LLVRDVRKIEAGQVQIPLYKNAGCNG 86

[Close]

BLAST of Carg17151-RA vs. TrEMBL
Match: tr|A0A0A0LGL4|A0A0A0LGL4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G857080 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 2.6e-33
Identity = 74/86 (86.05%), Postives = 78/86 (90.70%), Query Frame = 0


Query: 1  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYE 60
          MASSS T+ HGFYSSWT +ENKKFEEALAF+D+DTPDRFE VARAVGGGKTAEE RRLYE
Sbjct: 1  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYE 60

Query: 61 LLVRDVNKIEAGQVQIPLYKNVGYNG 87
          LLVRDV KIEAGQVQIPLYKN G NG
Sbjct: 61 LLVRDVRKIEAGQVQIPLYKNAGCNG 86

[Close]

BLAST of Carg17151-RA vs. TrEMBL
Match: tr|A0A2U1NXQ6|A0A2U1NXQ6_ARTAN (Protein RADIALIS-like 3 OS=Artemisia annua OX=35608 GN=CTI12_AA216430 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 4.3e-20
Identity = 50/86 (58.14%), Postives = 72/86 (83.72%), Query Frame = 0


Query: 1  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYE 60
          MAS+S T++    SSWT R+NK+FEEALA+Y++DTPDR+ N+ARAV GGK+ +EV+R YE
Sbjct: 1  MASNSMTSSRSSGSSWTSRQNKQFEEALAYYNKDTPDRWHNIARAV-GGKSVDEVKRHYE 60

Query: 61 LLVRDVNKIEAGQVQIPLYKNVGYNG 87
          +LVRD+ +IE+ QV +P+Y+++G NG
Sbjct: 61 ILVRDIMQIESDQVPLPIYRDIGSNG 85

[Close]

BLAST of Carg17151-RA vs. TrEMBL
Match: tr|A0A103YCJ7|A0A103YCJ7_CYNCS (Homeodomain-like protein (Fragment) OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_015085 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.2e-19
Identity = 51/86 (59.30%), Postives = 71/86 (82.56%), Query Frame = 0


Query: 1   MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYE 60
           MASSS T++    SSWT R+NK+FEEALA+Y++D+PDR+ N+ARAV GGK+ EEV+R YE
Sbjct: 115 MASSSMTSSRSSGSSWTPRQNKQFEEALAYYNKDSPDRWHNIARAV-GGKSVEEVKRHYE 174

Query: 61  LLVRDVNKIEAGQVQIPLYKNVGYNG 87
           +LVRD+ +IE+ QV +P Y+++G NG
Sbjct: 175 ILVRDIMQIESDQVPLPNYRDIGSNG 199

[Close]

BLAST of Carg17151-RA vs. TrEMBL
Match: tr|A0A1Y3BTL9|A0A1Y3BTL9_HELAN (Putative RAD-like 6 OS=Helianthus annuus OX=4232 GN=ATRL6 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.8e-19
Identity = 50/86 (58.14%), Postives = 71/86 (82.56%), Query Frame = 0


Query: 1  MASSSRTTAHGFYSSWTIRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYE 60
          MASSS T++    S+WT R+NK+FEEALA+Y++D+PDR+ N+ARAV GGK+ EEV+R YE
Sbjct: 1  MASSSMTSSRSSGSTWTQRQNKQFEEALAYYNKDSPDRWHNIARAV-GGKSVEEVKRHYE 60

Query: 61 LLVRDVNKIEAGQVQIPLYKNVGYNG 87
          +LVRD+ +IE+ QV +P Y+++G NG
Sbjct: 61 ILVRDIMQIESDQVPLPNYRSIGSNG 85

The following BLAST results are available for this feature:

BLAST of Carg17151-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023525025.1	1.9e-51	100.00	protein RADIALIS-like 4 [Cucurbita pepo subsp. pepo]	[more]
XP_022981879.1	5.4e-51	99.05	protein RADIALIS-like 4 [Cucurbita maxima]	[more]
XP_022940511.1	1.2e-50	99.05	protein RADIALIS-like 3 [Cucurbita moschata]	[more]
XP_022155868.1	3.5e-34	89.53	protein RADIALIS-like 4 [Momordica charantia]	[more]
XP_008466554.1	3.9e-33	86.05	PREDICTED: protein RADIALIS-like 4 [Cucumis melo] >KGN59967.1 hypothetical prote...	[more]

BLAST of Carg17151-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT4G39250.1	3.9e-19	57.83	RAD-like 1	[more]
AT2G18328.1	6.7e-19	60.49	RAD-like 4	[more]
AT2G21650.1	8.7e-19	57.65	Homeodomain-like superfamily protein	[more]
AT1G75250.1	9.7e-18	55.29	RAD-like 6	[more]
AT1G19510.1	2.8e-17	56.10	RAD-like 5	[more]

BLAST of Carg17151-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q6NNN0\|RADL3_ARATH	2.9e-19	62.35	Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1	[more]
sp\|F4JVB8\|RADL1_ARATH	7.1e-18	57.83	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]
sp\|Q1G3C4\|RADL4_ARATH	1.2e-17	60.49	Protein RADIALIS-like 4 OS=Arabidopsis thaliana OX=3702 GN=RL4 PE=2 SV=1	[more]
sp\|Q9SIJ5\|RADL2_ARATH	1.6e-17	57.65	Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1	[more]
sp\|Q1A173\|RADL6_ARATH	1.7e-16	55.29	Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1	[more]

BLAST of Carg17151-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CRN8\|A0A1S3CRN8_CUCME	2.6e-33	86.05	protein RADIALIS-like 4 OS=Cucumis melo OX=3656 GN=LOC103503940 PE=4 SV=1	[more]
tr\|A0A0A0LGL4\|A0A0A0LGL4_CUCSA	2.6e-33	86.05	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G857080 PE=4 SV=1	[more]
tr\|A0A2U1NXQ6\|A0A2U1NXQ6_ARTAN	4.3e-20	58.14	Protein RADIALIS-like 3 OS=Artemisia annua OX=35608 GN=CTI12_AA216430 PE=4 SV=1	[more]
tr\|A0A103YCJ7\|A0A103YCJ7_CYNCS	1.2e-19	59.30	Homeodomain-like protein (Fragment) OS=Cynara cardunculus var. scolymus OX=59895...	[more]
tr\|A0A1Y3BTL9\|A0A1Y3BTL9_HELAN	2.8e-19	58.14	Putative RAD-like 6 OS=Helianthus annuus OX=4232 GN=ATRL6 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR009057	Homeobox-like_sf
IPR001005	SANT/Myb

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg17151	Carg17151	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg17151-RA.CDS.1	Carg17151-RA.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg17151-RA.exon.1	Carg17151-RA.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg17151-RA	Carg17151-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 12..65 e-value: 0.0088 score: 25.2
None	No IPR available	GENE3D	G3DSA:1.10.10.60		coord: 12..76 e-value: 7.1E-16 score: 59.8
None	No IPR available	PANTHER	PTHR43952	FAMILY NOT NAMED	coord: 1..83
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	SSF46689	Homeodomain-like	coord: 14..70