CmoCh09G001500 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh09G001500
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description(DNA binding protein) (MYB-related transcription factor)
LocationCmo_Chr09 : 676769 .. 677056 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATCAAGCTCTGTCACGTCGGCGGCACGTGGGTTTTACTCATCCTGGACAAAAAAAGAAAACAAGAAATTTGAGGAGGCATTAGCCTACTATGACCAGGACACACCAGACCGTTTTGAGAAGGTAGCGAGGGCTGTTGGTGGTGGGAAAACAGCTGAGGAAGCAAGAAGACTCTATGAGCTACTCGTGCGAGATGTCAAGAAAATAGAAGCTGGTCAAGTCCAAATACCCCTCTACAAGAACGTGGGTTGTAATGGCAGAGGGTATGCTGACCAGAAGAGGTAA

mRNA sequence

ATGGCATCAAGCTCTGTCACGTCGGCGGCACGTGGGTTTTACTCATCCTGGACAAAAAAAGAAAACAAGAAATTTGAGGAGGCATTAGCCTACTATGACCAGGACACACCAGACCGTTTTGAGAAGGTAGCGAGGGCTGTTGGTGGTGGGAAAACAGCTGAGGAAGCAAGAAGACTCTATGAGCTACTCGTGCGAGATGTCAAGAAAATAGAAGCTGGTCAAGTCCAAATACCCCTCTACAAGAACGTGGGTTGTAATGGCAGAGGGTATGCTGACCAGAAGAGGTAA

Coding sequence (CDS)

ATGGCATCAAGCTCTGTCACGTCGGCGGCACGTGGGTTTTACTCATCCTGGACAAAAAAAGAAAACAAGAAATTTGAGGAGGCATTAGCCTACTATGACCAGGACACACCAGACCGTTTTGAGAAGGTAGCGAGGGCTGTTGGTGGTGGGAAAACAGCTGAGGAAGCAAGAAGACTCTATGAGCTACTCGTGCGAGATGTCAAGAAAATAGAAGCTGGTCAAGTCCAAATACCCCTCTACAAGAACGTGGGTTGTAATGGCAGAGGGTATGCTGACCAGAAGAGGTAA
Homology
[Close]
BLAST of CmoCh09G001500 vs. Swiss-Prot
Match: RADL3_ARATH (Protein RADIALIS-like 3 OS=Arabidopsis thaliana GN=RL3 PE=2 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.3e-18
Identity = 53/86 (61.63%), Postives = 65/86 (75.58%), Query Frame = 1 

Query: 1  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLY 60
          MAS+S++S+A     SWT+KENK FE ALA YDQDTPDR+  VARAV GGK+AEE RR Y
Sbjct: 1  MASNSMSSSA-----SWTRKENKLFERALATYDQDTPDRWHNVARAV-GGKSAEEVRRHY 60

Query: 61 ELLVRDVKKIEAGQVQIPLYKNVGCN 87
          ELL+RDV  IE+G+   P Y++ G N
Sbjct: 61 ELLIRDVNDIESGRYPHPNYRSNGNN 80

[Close]
BLAST of CmoCh09G001500 vs. Swiss-Prot
Match: RADL2_ARATH (Protein RADIALIS-like 2 OS=Arabidopsis thaliana GN=RL2 PE=2 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 3.7e-18
Identity = 56/98 (57.14%), Postives = 66/98 (67.35%), Query Frame = 1 

Query: 1  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLY 60
          MAS S++S   G   SWT K+NK FE ALA YDQDTPDR+  VARAV GGKT EEA+R Y
Sbjct: 1  MASGSMSSYGSG---SWTVKQNKAFERALAVYDQDTPDRWHNVARAV-GGKTPEEAKRQY 60

Query: 61 ELLVRDVKKIEAGQVQIPLYKNVGCN---GRGYADQKR 96
          +LLVRD++ IE G V  P YK    N   GR   ++KR
Sbjct: 61 DLLVRDIESIENGHVPFPDYKTTTGNSNRGRLRDEEKR 94

[Close]
BLAST of CmoCh09G001500 vs. Swiss-Prot
Match: RADL1_ARATH (Protein RADIALIS-like 1 OS=Arabidopsis thaliana GN=RL1 PE=2 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 3.7e-18
Identity = 53/97 (54.64%), Postives = 68/97 (70.10%), Query Frame = 1 

Query: 1  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLY 60
          MASSS++S + G   SWT K+NK FE+ALA YDQDTP+R++ VA+ V GGKT EE +R Y
Sbjct: 1  MASSSMSSQSSG---SWTAKQNKAFEQALATYDQDTPNRWQNVAKVV-GGKTTEEVKRHY 60

Query: 61 ELLVRDVKKIEAGQVQIPLYKNVG--CNGRGYADQKR 96
          ELLV+D+  IE G V  P Y+  G   NGR   ++KR
Sbjct: 61 ELLVQDINSIENGHVPFPNYRTSGGCTNGRLSQEEKR 93

[Close]
BLAST of CmoCh09G001500 vs. Swiss-Prot
Match: RADL5_ARATH (Protein RADIALIS-like 5 OS=Arabidopsis thaliana GN=RL5 PE=3 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.6e-16
Identity = 50/94 (53.19%), Postives = 65/94 (69.15%), Query Frame = 1 

Query: 1  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLY 60
          MASSS++S+     SSWT K+NK FE ALA YD+DTPDR++ VA+AV G K+AEE +R Y
Sbjct: 1  MASSSMSSS-----SSWTSKQNKMFERALAVYDKDTPDRWQNVAKAV-GSKSAEEVKRHY 60

Query: 61 ELLVRDVKKIEAGQVQIPLYK--NVGCNGRGYAD 93
          ++LV D+  IE   V +P YK  +VG   RG  D
Sbjct: 61 DILVEDLMNIEQDLVPLPKYKTVDVGSKSRGIDD 88

[Close]
BLAST of CmoCh09G001500 vs. Swiss-Prot
Match: RADL4_ARATH (Protein RADIALIS-like 4 OS=Arabidopsis thaliana GN=RL4 PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 7.6e-16
Identity = 46/82 (56.10%), Postives = 63/82 (76.83%), Query Frame = 1 

Query: 1  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLY 60
          MASSS+++      SSWT +E+K+FE ALA +D+DTPDR++K+ARAV GGK+ EE +R Y
Sbjct: 1  MASSSMST------SSWTAREDKQFEMALAKFDKDTPDRWQKIARAV-GGKSTEEVKRHY 60

Query: 61 ELLVRDVKKIEAGQVQIPLYKN 83
          ELL+RDV  IE+G+   P Y+N
Sbjct: 61 ELLLRDVNDIESGRYPQPRYRN 75

[Close]
BLAST of CmoCh09G001500 vs. TrEMBL
Match: A0A0A0LGL4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G857080 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 6.9e-40
Identity = 86/95 (90.53%), Postives = 91/95 (95.79%), Query Frame = 1 

Query: 1  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLY 60
          MASSSVTS   GFYSSWTKKENKKFEEALA++D+DTPDRFEKVARAVGGGKTAEEARRLY
Sbjct: 1  MASSSVTST-HGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLY 60

Query: 61 ELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQKR 96
          ELLVRDV+KIEAGQVQIPLYKN GCNGRGYADQ+R
Sbjct: 61 ELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR 94

[Close]
BLAST of CmoCh09G001500 vs. TrEMBL
Match: A0A103YCJ7_CYNCS (Homeodomain-like protein (Fragment) OS=Cynara cardunculus var. scolymus GN=Ccrd_015085 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.1e-21
Identity = 55/95 (57.89%), Postives = 79/95 (83.16%), Query Frame = 1 

Query: 1   MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLY 60
           MASSS+TS+ R   SSWT ++NK+FEEALAYY++D+PDR+  +ARAV GGK+ EE +R Y
Sbjct: 115 MASSSMTSS-RSSGSSWTPRQNKQFEEALAYYNKDSPDRWHNIARAV-GGKSVEEVKRHY 174

Query: 61  ELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQKR 96
           E+LVRD+ +IE+ QV +P Y+++G NGRG+A+++R
Sbjct: 175 EILVRDIMQIESDQVPLPNYRDIGSNGRGFANEQR 207

[Close]
BLAST of CmoCh09G001500 vs. TrEMBL
Match: A0A068UIQ1_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00024780001 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 9.4e-21
Identity = 56/95 (58.95%), Postives = 76/95 (80.00%), Query Frame = 1 

Query: 1  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLY 60
          MASSS+TS+ R    SWT K+NK+FEEALA YD+DTPDR+  +ARAV GGK+ EE RR Y
Sbjct: 1  MASSSMTSS-RSSSQSWTAKQNKQFEEALATYDKDTPDRWYNIARAV-GGKSEEEVRRHY 60

Query: 61 ELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQKR 96
          E+LV+D+ +IE+ QV +P Y+++  NGRGYA+++R
Sbjct: 61 EVLVKDIMQIESDQVPLPNYRSMASNGRGYANEQR 93

[Close]
BLAST of CmoCh09G001500 vs. TrEMBL
Match: A0A162A4Z7_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_019534 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.1e-20
Identity = 53/95 (55.79%), Postives = 77/95 (81.05%), Query Frame = 1 

Query: 1  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLY 60
          MAS+S+TS+ R   S+WT+++NK+FEEALA YD+DTPDR+  +ARAV GGK+ EE +R Y
Sbjct: 1  MASNSITSS-RNCGSTWTQRQNKQFEEALATYDRDTPDRWHNIARAV-GGKSTEEVKRHY 60

Query: 61 ELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQKR 96
          ++LV+D+ +IE+ QV +P YKN G NGRG+ +++R
Sbjct: 61 DILVKDIMQIESDQVPLPNYKNTGGNGRGFNNEQR 93

[Close]
BLAST of CmoCh09G001500 vs. TrEMBL
Match: A0A022R1R6_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a016932mg PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.5e-18
Identity = 53/95 (55.79%), Postives = 71/95 (74.74%), Query Frame = 1 

Query: 1  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLY 60
          MASSS++S++R   SSWT K+NK+FEEA+A +D+DTPDR+  +AR V  GK+AEE RR Y
Sbjct: 1  MASSSMSSSSRNSASSWTAKQNKQFEEAIAMFDRDTPDRWHNIARQV-SGKSAEEVRRHY 60

Query: 61 ELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQKR 96
          E L +D+ KIE  QV IP YK++  N RGY++  R
Sbjct: 61 EALEKDIMKIETDQVPIPNYKSIS-NARGYSNDHR 93

[Close]
BLAST of CmoCh09G001500 vs. TAIR10
Match: AT4G39250.1 (AT4G39250.1 RAD-like 1)

HSP 1 Score: 92.0 bits (227), Expect = 2.1e-19
Identity = 53/97 (54.64%), Postives = 68/97 (70.10%), Query Frame = 1 

Query: 1  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLY 60
          MASSS++S + G   SWT K+NK FE+ALA YDQDTP+R++ VA+ V GGKT EE +R Y
Sbjct: 1  MASSSMSSQSSG---SWTAKQNKAFEQALATYDQDTPNRWQNVAKVV-GGKTTEEVKRHY 60

Query: 61 ELLVRDVKKIEAGQVQIPLYKNVG--CNGRGYADQKR 96
          ELLV+D+  IE G V  P Y+  G   NGR   ++KR
Sbjct: 61 ELLVQDINSIENGHVPFPNYRTSGGCTNGRLSQEEKR 93

[Close]
BLAST of CmoCh09G001500 vs. TAIR10
Match: AT2G21650.1 (AT2G21650.1 Homeodomain-like superfamily protein)

HSP 1 Score: 92.0 bits (227), Expect = 2.1e-19
Identity = 56/98 (57.14%), Postives = 66/98 (67.35%), Query Frame = 1 

Query: 1  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLY 60
          MAS S++S   G   SWT K+NK FE ALA YDQDTPDR+  VARAV GGKT EEA+R Y
Sbjct: 1  MASGSMSSYGSG---SWTVKQNKAFERALAVYDQDTPDRWHNVARAV-GGKTPEEAKRQY 60

Query: 61 ELLVRDVKKIEAGQVQIPLYKNVGCN---GRGYADQKR 96
          +LLVRD++ IE G V  P YK    N   GR   ++KR
Sbjct: 61 DLLVRDIESIENGHVPFPDYKTTTGNSNRGRLRDEEKR 94

[Close]
BLAST of CmoCh09G001500 vs. TAIR10
Match: AT1G19510.1 (AT1G19510.1 RAD-like 5)

HSP 1 Score: 85.9 bits (211), Expect = 1.5e-17
Identity = 50/94 (53.19%), Postives = 65/94 (69.15%), Query Frame = 1 

Query: 1  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLY 60
          MASSS++S+     SSWT K+NK FE ALA YD+DTPDR++ VA+AV G K+AEE +R Y
Sbjct: 1  MASSSMSSS-----SSWTSKQNKMFERALAVYDKDTPDRWQNVAKAV-GSKSAEEVKRHY 60

Query: 61 ELLVRDVKKIEAGQVQIPLYK--NVGCNGRGYAD 93
          ++LV D+  IE   V +P YK  +VG   RG  D
Sbjct: 61 DILVEDLMNIEQDLVPLPKYKTVDVGSKSRGIDD 88

[Close]
BLAST of CmoCh09G001500 vs. TAIR10
Match: AT2G18328.1 (AT2G18328.1 RAD-like 4)

HSP 1 Score: 84.3 bits (207), Expect = 4.3e-17
Identity = 46/82 (56.10%), Postives = 63/82 (76.83%), Query Frame = 1 

Query: 1  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLY 60
          MASSS+++      SSWT +E+K+FE ALA +D+DTPDR++K+ARAV GGK+ EE +R Y
Sbjct: 1  MASSSMST------SSWTAREDKQFEMALAKFDKDTPDRWQKIARAV-GGKSTEEVKRHY 60

Query: 61 ELLVRDVKKIEAGQVQIPLYKN 83
          ELL+RDV  IE+G+   P Y+N
Sbjct: 61 ELLLRDVNDIESGRYPQPRYRN 75

[Close]
BLAST of CmoCh09G001500 vs. TAIR10
Match: AT1G75250.1 (AT1G75250.1 RAD-like 6)

HSP 1 Score: 83.2 bits (204), Expect = 9.6e-17
Identity = 44/87 (50.57%), Postives = 56/87 (64.37%), Query Frame = 1 

Query: 6  VTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVR 65
          + S +R   S WT  +NK FE ALA YD+DTPDR+  VA+AV GGKT EE +R Y++LV 
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAV-GGKTVEEVKRHYDILVE 60

Query: 66 DVKKIEAGQVQIPLYKNVGCNGRGYAD 93
          D+  IE G+V +P YK    N R   D
Sbjct: 61 DLINIETGRVPLPNYKTFESNSRSIND 86

[Close]
BLAST of CmoCh09G001500 vs. NCBI nr
Match: gi|659133100|ref|XP_008466554.1| (PREDICTED: protein RADIALIS-like 4 [Cucumis melo])

HSP 1 Score: 171.0 bits (432), Expect = 9.9e-40
Identity = 86/95 (90.53%), Postives = 91/95 (95.79%), Query Frame = 1 

Query: 1  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLY 60
          MASSSVTS   GFYSSWTKKENKKFEEALA++D+DTPDRFEKVARAVGGGKTAEEARRLY
Sbjct: 1  MASSSVTST-HGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLY 60

Query: 61 ELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQKR 96
          ELLVRDV+KIEAGQVQIPLYKN GCNGRGYADQ+R
Sbjct: 61 ELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR 94

[Close]
BLAST of CmoCh09G001500 vs. NCBI nr
Match: gi|747073426|ref|XP_011083673.1| (PREDICTED: protein RADIALIS-like 3 [Sesamum indicum])

HSP 1 Score: 112.8 bits (281), Expect = 3.2e-22
Identity = 59/95 (62.11%), Postives = 76/95 (80.00%), Query Frame = 1 

Query: 1  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLY 60
          MASSS+TSA RG  S+WT K+NK+FEEALA YD+DTPDR+  +ARAV GGK+AEE RR Y
Sbjct: 1  MASSSMTSA-RGSASAWTSKQNKQFEEALAMYDKDTPDRWHNIARAV-GGKSAEEVRRHY 60

Query: 61 ELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQKR 96
          E+LV+D+ +IE  QV IP Y+ +G N RGY +++R
Sbjct: 61 EILVKDIMQIETDQVPIPNYRAMGSNSRGYGNEQR 93

[Close]
BLAST of CmoCh09G001500 vs. NCBI nr
Match: gi|976921930|gb|KVI06567.1| (Homeodomain-like protein, partial [Cynara cardunculus var. scolymus])

HSP 1 Score: 110.5 bits (275), Expect = 1.6e-21
Identity = 55/95 (57.89%), Postives = 79/95 (83.16%), Query Frame = 1 

Query: 1   MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLY 60
           MASSS+TS+ R   SSWT ++NK+FEEALAYY++D+PDR+  +ARAV GGK+ EE +R Y
Sbjct: 115 MASSSMTSS-RSSGSSWTPRQNKQFEEALAYYNKDSPDRWHNIARAV-GGKSVEEVKRHY 174

Query: 61  ELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQKR 96
           E+LVRD+ +IE+ QV +P Y+++G NGRG+A+++R
Sbjct: 175 EILVRDIMQIESDQVPLPNYRDIGSNGRGFANEQR 207

[Close]
BLAST of CmoCh09G001500 vs. NCBI nr
Match: gi|661889060|emb|CDP07503.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 107.5 bits (267), Expect = 1.3e-20
Identity = 56/95 (58.95%), Postives = 76/95 (80.00%), Query Frame = 1 

Query: 1  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLY 60
          MASSS+TS+ R    SWT K+NK+FEEALA YD+DTPDR+  +ARAV GGK+ EE RR Y
Sbjct: 1  MASSSMTSS-RSSSQSWTAKQNKQFEEALATYDKDTPDRWYNIARAV-GGKSEEEVRRHY 60

Query: 61 ELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQKR 96
          E+LV+D+ +IE+ QV +P Y+++  NGRGYA+++R
Sbjct: 61 EVLVKDIMQIESDQVPLPNYRSMASNGRGYANEQR 93

[Close]
BLAST of CmoCh09G001500 vs. NCBI nr
Match: gi|1021038509|gb|KZM96292.1| (hypothetical protein DCAR_019534 [Daucus carota subsp. sativus])

HSP 1 Score: 106.3 bits (264), Expect = 3.0e-20
Identity = 53/95 (55.79%), Postives = 77/95 (81.05%), Query Frame = 1 

Query: 1  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLY 60
          MAS+S+TS+ R   S+WT+++NK+FEEALA YD+DTPDR+  +ARAV GGK+ EE +R Y
Sbjct: 1  MASNSITSS-RNCGSTWTQRQNKQFEEALATYDRDTPDRWHNIARAV-GGKSTEEVKRHY 60

Query: 61 ELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQKR 96
          ++LV+D+ +IE+ QV +P YKN G NGRG+ +++R
Sbjct: 61 DILVKDIMQIESDQVPLPNYKNTGGNGRGFNNEQR 93

The following BLAST results are available for this feature:
BLAST of CmoCh09G001500 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RADL3_ARATH1.3e-1861.63Protein RADIALIS-like 3 OS=Arabidopsis thaliana GN=RL3 PE=2 SV=1[more]
RADL2_ARATH3.7e-1857.14Protein RADIALIS-like 2 OS=Arabidopsis thaliana GN=RL2 PE=2 SV=1[more]
RADL1_ARATH3.7e-1854.64Protein RADIALIS-like 1 OS=Arabidopsis thaliana GN=RL1 PE=2 SV=1[more]
RADL5_ARATH2.6e-1653.19Protein RADIALIS-like 5 OS=Arabidopsis thaliana GN=RL5 PE=3 SV=1[more]
RADL4_ARATH7.6e-1656.10Protein RADIALIS-like 4 OS=Arabidopsis thaliana GN=RL4 PE=2 SV=1[more]
BLAST of CmoCh09G001500 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LGL4_CUCSA6.9e-4090.53Uncharacterized protein OS=Cucumis sativus GN=Csa_3G857080 PE=4 SV=1[more]
A0A103YCJ7_CYNCS1.1e-2157.89Homeodomain-like protein (Fragment) OS=Cynara cardunculus var. scolymus GN=Ccrd_... [more]
A0A068UIQ1_COFCA9.4e-2158.95Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00024780001 PE=4 SV=1[more]
A0A162A4Z7_DAUCA2.1e-2055.79Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_019534 PE=4 SV=1[more]
A0A022R1R6_ERYGU1.5e-1855.79Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a016932mg PE=4 SV=1[more]
BLAST of CmoCh09G001500 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G39250.12.1e-1954.64 RAD-like 1[more]
AT2G21650.12.1e-1957.14 Homeodomain-like superfamily protein[more]
AT1G19510.11.5e-1753.19 RAD-like 5[more]
AT2G18328.14.3e-1756.10 RAD-like 4[more]
AT1G75250.19.6e-1750.57 RAD-like 6[more]
BLAST of CmoCh09G001500 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659133100|ref|XP_008466554.1|9.9e-4090.53PREDICTED: protein RADIALIS-like 4 [Cucumis melo][more]
gi|747073426|ref|XP_011083673.1|3.2e-2262.11PREDICTED: protein RADIALIS-like 3 [Sesamum indicum][more]
gi|976921930|gb|KVI06567.1|1.6e-2157.89Homeodomain-like protein, partial [Cynara cardunculus var. scolymus][more]
gi|661889060|emb|CDP07503.1|1.3e-2058.95unnamed protein product [Coffea canephora][more]
gi|1021038509|gb|KZM96292.1|3.0e-2055.79hypothetical protein DCAR_019534 [Daucus carota subsp. sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009057Homeobox-like_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh09G001500.1CmoCh09G001500.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009057Homeodomain-likeGENE3DG3DSA:1.10.10.60coord: 14..70
score: 3.
IPR009057Homeodomain-likeunknownSSF46689Homeodomain-likecoord: 15..71
score: 8.78
NoneNo IPR availablePANTHERPTHR24078DNAJ HOMOLOG SUBFAMILY C MEMBERcoord: 17..90
score: 5.3
NoneNo IPR availablePANTHERPTHR24078:SF177PROTEIN DNJ-23-RELATEDcoord: 17..90
score: 5.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh09G001500Cucsa.342440Cucumber (Gy14) v1cgycmoB0920
CmoCh09G001500CmaCh09G001530Cucurbita maxima (Rimu)cmacmoB027
CmoCh09G001500CmaCh01G019150Cucurbita maxima (Rimu)cmacmoB435
CmoCh09G001500Cla020769Watermelon (97103) v1cmowmB018
CmoCh09G001500Cla022488Watermelon (97103) v1cmowmB007
CmoCh09G001500Csa3G857080Cucumber (Chinese Long) v2cmocuB008
CmoCh09G001500MELO3C003827Melon (DHL92) v3.5.1cmomeB021
CmoCh09G001500ClCG05G018910Watermelon (Charleston Gray)cmowcgB015
CmoCh09G001500ClCG08G015000Watermelon (Charleston Gray)cmowcgB023
CmoCh09G001500CSPI03G42770Wild cucumber (PI 183967)cmocpiB008
CmoCh09G001500Cp4.1LG11g02130Cucurbita pepo (Zucchini)cmocpeB006
CmoCh09G001500Cp4.1LG02g07540Cucurbita pepo (Zucchini)cmocpeB020
CmoCh09G001500Cp4.1LG06g01000Cucurbita pepo (Zucchini)cmocpeB034
CmoCh09G001500Cp4.1LG07g04060Cucurbita pepo (Zucchini)cmocpeB037
CmoCh09G001500MELO3C030327.2Melon (DHL92) v3.6.1cmomedB012
CmoCh09G001500MELO3C003827.2Melon (DHL92) v3.6.1cmomedB020
CmoCh09G001500CsaV3_2G028790Cucumber (Chinese Long) v3cmocucB0004
CmoCh09G001500Cla97C08G158570Watermelon (97103) v2cmowmbB023
CmoCh09G001500Cla97C05G100410Watermelon (97103) v2cmowmbB014
CmoCh09G001500Bhi04G000152Wax gourdcmowgoB0011
CmoCh09G001500CsGy2G019890Cucumber (Gy14) v2cgybcmoB138
CmoCh09G001500Carg04049Silver-seed gourdcarcmoB1307
CmoCh09G001500Carg08719Silver-seed gourdcarcmoB0144
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh09G001500CmoCh12G004170Cucurbita moschata (Rifu)cmocmoB004
CmoCh09G001500CmoCh01G019780Cucurbita moschata (Rifu)cmocmoB017
CmoCh09G001500CmoCh05G002550Cucurbita moschata (Rifu)cmocmoB033
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh09G001500Cucurbita pepo (Zucchini)cmocpeB003
CmoCh09G001500Cucurbita pepo (Zucchini)cmocpeB011
CmoCh09G001500Cucurbita pepo (Zucchini)cmocpeB018
CmoCh09G001500Bottle gourd (USVL1VR-Ls)cmolsiB001
CmoCh09G001500Bottle gourd (USVL1VR-Ls)cmolsiB012
CmoCh09G001500Bottle gourd (USVL1VR-Ls)cmolsiB020
CmoCh09G001500Cucumber (Gy14) v2cgybcmoB143
CmoCh09G001500Cucumber (Gy14) v2cgybcmoB260
CmoCh09G001500Cucumber (Gy14) v2cgybcmoB688
CmoCh09G001500Melon (DHL92) v3.6.1cmomedB039
CmoCh09G001500Silver-seed gourdcarcmoB0255
CmoCh09G001500Silver-seed gourdcarcmoB0541
CmoCh09G001500Silver-seed gourdcarcmoB1261
CmoCh09G001500Cucumber (Chinese Long) v3cmocucB0007
CmoCh09G001500Cucumber (Chinese Long) v3cmocucB0012
CmoCh09G001500Cucumber (Chinese Long) v3cmocucB0028
CmoCh09G001500Watermelon (97103) v2cmowmbB002
CmoCh09G001500Wax gourdcmowgoB0024
CmoCh09G001500Cucurbita moschata (Rifu)cmocmoB027
CmoCh09G001500Cucumber (Gy14) v1cgycmoB0640
CmoCh09G001500Cucurbita maxima (Rimu)cmacmoB165
CmoCh09G001500Cucurbita maxima (Rimu)cmacmoB755
CmoCh09G001500Wild cucumber (PI 183967)cmocpiB002
CmoCh09G001500Wild cucumber (PI 183967)cmocpiB026
CmoCh09G001500Cucumber (Chinese Long) v2cmocuB002
CmoCh09G001500Melon (DHL92) v3.5.1cmomeB012
CmoCh09G001500Watermelon (97103) v1cmowmB027