CsaV3_2G028790 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_2G028790
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	protein RADIALIS-like 4
Location	chr2 : 18880855 .. 18882611 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CATTTTCACACCAAACCTTGACTTGGTCCTCTTCTTAAACGGGATCCTTAAGTCTCTTTCTTACGGCCATTATTTCTTCGGCTTTCTTTACAGTATCTTCACCTACTTATTCTCCTGTGTATTGTAAGACAAACAATATATCTTCACCCTTTCAAAACTTTTCATCCAAACTTCCTTTATATAATGGCATCAAGCTCTTTTAAATCTTCAGGCAATTCTAGCTCCTCATGGACTCTTAAGCAAAACAAAAAATTTGAGGACGCTCTGGTTTTATATCCTGAGGACACGCCAGATAGATGGCAAAAGGTGGCCAGGGCAGTGGGTGGAAAAACACCTGAGGAAGTAAAAAGGCATTATGATATCCTGTTGCAAGATCTCATGCATATAGAATCTGGAAAAGTTCCTCTTCCTAACTACAAGCCCATTGCTCCCAACGGTTCAATGTATGATGATGAGCAGAGGTAACGTTCTTAATACTCTTAAGCGTGTTTTTTATGTCATGTATCTCTATCCTATAGTTTCATTCTCGGAAAATCATTCAAAACCTTCGAGTATTCAGTTCTTAATGAAAAAAGACCTTCAAAATAACACGATTCTTACTAGTGTCCCTAGAAAAACAACTTATAAGAGAAAAGGTATCCATCTTTATTAGGTGAACCAACCTCCCATGTTTCTTCAAAGGCATACTATTATCCAATTTTGGAATTTAAATCCATAAGACTTTGTTTTTAGTTTCATTCAAAAATCTCATACCGATAGCAATAACGTCCTTAGTTATTTATATAACATGGATCTTCTCTTTTCGAGTGAATGTTAGACTACACGTATATGTTTCTTTCCCAACCATCCTCAGACTAAAATTTCAATTTCCTTTTCATCATTTACCCAATGGAAGTTCAAATGGCTGCAAGGCTATATAAAAGGAAATAATCAATCTCAACTGAATTTCTATAAACAGTATGTGTAGAGGAGAGAAAGAAGATGATATTATTTTATGTCCATGTATCCTTACGTACCACGTTCTCCCTTTTCCTACTCGATTAGCAACAACTTAAATCCCAACACCGACAACTCTCTTTTCTACAAAGACTTCATGCTATTCCTATTCTATTCATGCATTCCCTCTTCCTCTTTCTAAGAAAAAGACCACGTGAAATCTAATCTCCCATGCTTTAAATTACTTTGCACGTGATCCTGTATTTCTGACTTTAGACATCTACGTATTTAATTATAAATCCCTTCTTTGAAACTTAGATCTACTTCAGTATTTGGCCACAAAAGTACTAATTAAAAAAAAAAATTAAGCTAACATGGGTTGCGTTAATTGAACATCGTTGCCTCCTTGAACTATTGCACGCTTATGAAAAATTCCAGTTTAAGTTTAACTAATCTTTTTAATTATCATTCTCTCTTCAAACTATTGCAGGCTCATGAAGAATCTAAAGCTCCAATAAGGCAAGGTATTATACCAACGATAAAATAAGAGCTGTAGAAGCGTTGTTCTCGATAATTTCAAGAATATAGCTTGGTGTCGGTATTTCTCTACTTTCCCGCTCTGTTTGTCTTTTCTACCATATATTGCTAAACTATTGTAACCTGTGAAGCGAACTATAATCTATTGTAAGTTGTAATCTGATTGTTCATGTACCCGATTTCTCTGCTTTTGTGTACTTCTATCATTACTGTTTCATTCGCGCTTTCCAATCATTAAAGAAAAGAAAAGAAAGGAATACCATGTAATATATTCGTTTGCCTTT

mRNA sequence

ATGGCATCAAGCTCTTTTAAATCTTCAGGCAATTCTAGCTCCTCATGGACTCTTAAGCAAAACAAAAAATTTGAGGACGCTCTGGTTTTATATCCTGAGGACACGCCAGATAGATGGCAAAAGGTGGCCAGGGCAGTGGGTGGAAAAACACCTGAGGAAGTAAAAAGGCATTATGATATCCTGTTGCAAGATCTCATGCATATAGAATCTGGAAAAGTTCCTCTTCCTAACTACAAGCCCATTGCTCCCAACGGTTCAATGTATGATGATGAGCAGAGGCTCATGAAGAATCTAAAGCTCCAATAA

Coding sequence (CDS)

ATGGCATCAAGCTCTTTTAAATCTTCAGGCAATTCTAGCTCCTCATGGACTCTTAAGCAAAACAAAAAATTTGAGGACGCTCTGGTTTTATATCCTGAGGACACGCCAGATAGATGGCAAAAGGTGGCCAGGGCAGTGGGTGGAAAAACACCTGAGGAAGTAAAAAGGCATTATGATATCCTGTTGCAAGATCTCATGCATATAGAATCTGGAAAAGTTCCTCTTCCTAACTACAAGCCCATTGCTCCCAACGGTTCAATGTATGATGATGAGCAGAGGCTCATGAAGAATCTAAAGCTCCAATAA

Protein sequence

MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDILLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKLQ

Homology

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BLAST of CsaV3_2G028790 vs. NCBI nr
Match: XP_004152694.1 (PREDICTED: protein RADIALIS-like 4 [Cucumis sativus] >KGN62607.1 hypothetical protein Csa_2G361710 [Cucumis sativus])

HSP 1 Score: 207.2 bits (526), Expect = 2.6e-50
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDI 60
           MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDI
Sbjct: 1   MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDI 60

Query: 61  LLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKLQ 102
           LLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKLQ
Sbjct: 61  LLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKLQ 101

[Close]

BLAST of CsaV3_2G028790 vs. NCBI nr
Match: XP_008444724.1 (PREDICTED: protein RADIALIS-like 4 [Cucumis melo])

HSP 1 Score: 202.2 bits (513), Expect = 8.4e-49
Identity = 98/101 (97.03%), Postives = 99/101 (98.02%), Query Frame = 0


Query: 1   MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDI 60
           MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKT EEVKRHYDI
Sbjct: 1   MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60

Query: 61  LLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKLQ 102
           LLQDLMHIESGKVPLPNYKP+ PNGSMYDDEQRLMKNLKLQ
Sbjct: 61  LLQDLMHIESGKVPLPNYKPVVPNGSMYDDEQRLMKNLKLQ 101

[Close]

BLAST of CsaV3_2G028790 vs. NCBI nr
Match: XP_022961874.1 (protein RADIALIS-like 4 [Cucurbita moschata] >XP_022996692.1 protein RADIALIS-like 4 [Cucurbita maxima] >XP_023545905.1 protein RADIALIS-like 4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 181.8 bits (460), Expect = 1.2e-42
Identity = 87/101 (86.14%), Postives = 93/101 (92.08%), Query Frame = 0


Query: 1   MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDI 60
           MA+S FKSSG+SSSSWT KQNKKFEDAL LYPEDTPDRWQKVAR VGGKT EEVKRHYDI
Sbjct: 1   MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDI 60

Query: 61  LLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKLQ 102
           L+QDLMHIESGK+PLPNYKPI  NG++Y DEQRLMKNLKLQ
Sbjct: 61  LVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQRLMKNLKLQ 101

[Close]

BLAST of CsaV3_2G028790 vs. NCBI nr
Match: XP_022951683.1 (protein RADIALIS-like 4 [Cucurbita moschata])

HSP 1 Score: 172.2 bits (435), Expect = 9.3e-40
Identity = 84/101 (83.17%), Postives = 90/101 (89.11%), Query Frame = 0


Query: 1   MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDI 60
           MAS++F+SSG+SSSSWT KQNKKFEDAL  YPEDTPDRWQKVARAVGGKT EEVKRHYDI
Sbjct: 1   MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60

Query: 61  LLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKLQ 102
           L+ DLMHIESGKVPLP YKPIA N  +  DEQRLMKNLKLQ
Sbjct: 61  LVHDLMHIESGKVPLPKYKPIASNSIVCGDEQRLMKNLKLQ 101

[Close]

BLAST of CsaV3_2G028790 vs. NCBI nr
Match: XP_023538249.1 (protein RADIALIS-like 4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 171.0 bits (432), Expect = 2.1e-39
Identity = 83/101 (82.18%), Postives = 90/101 (89.11%), Query Frame = 0


Query: 1   MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDI 60
           MAS++F+SSG+SSS+WT KQNKKFEDAL  YPEDTPDRWQKVARAVGGKT EEVKRHYDI
Sbjct: 1   MASNTFRSSGSSSSTWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60

Query: 61  LLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKLQ 102
           L+ DLMHIESGKVPLP YKPIA N  +  DEQRLMKNLKLQ
Sbjct: 61  LVHDLMHIESGKVPLPKYKPIASNSIVCGDEQRLMKNLKLQ 101

[Close]

BLAST of CsaV3_2G028790 vs. TAIR10
Match: AT1G19510.1 (RAD-like 5)

HSP 1 Score: 116.7 bits (291), Expect = 8.4e-27
Identity = 61/104 (58.65%), Postives = 77/104 (74.04%), Query Frame = 0


Query: 1   MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDI 60
           MASSS     +SSSSWT KQNK FE AL +Y +DTPDRWQ VA+AVG K+ EEVKRHYDI
Sbjct: 1   MASSSM----SSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDI 60

Query: 61  LLQDLMHIESGKVPLPNYKPI---APNGSMYDDEQRLMKNLKLQ 102
           L++DLM+IE   VPLP YK +   + +  + D + RLMKN+++Q
Sbjct: 61  LVEDLMNIEQDLVPLPKYKTVDVGSKSRGIDDFDLRLMKNMRIQ 100

[Close]

BLAST of CsaV3_2G028790 vs. TAIR10
Match: AT2G21650.1 (Homeodomain-like superfamily protein)

HSP 1 Score: 114.8 bits (286), Expect = 3.2e-26
Identity = 60/104 (57.69%), Postives = 75/104 (72.12%), Query Frame = 0


Query: 1   MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDI 60
           MAS S  S G  S SWT+KQNK FE AL +Y +DTPDRW  VARAVGGKTPEE KR YD+
Sbjct: 1   MASGSMSSYG--SGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDL 60

Query: 61  LLQDLMHIESGKVPLPNYKPIAPN---GSMYDDEQRLMKNLKLQ 102
           L++D+  IE+G VP P+YK    N   G + D+E+R M+++KLQ
Sbjct: 61  LVRDIESIENGHVPFPDYKTTTGNSNRGRLRDEEKR-MRSMKLQ 101

[Close]

BLAST of CsaV3_2G028790 vs. TAIR10
Match: AT4G39250.1 (RAD-like 1)

HSP 1 Score: 114.0 bits (284), Expect = 5.4e-26
Identity = 59/103 (57.28%), Postives = 74/103 (71.84%), Query Frame = 0


Query: 1   MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDI 60
           MASSS   S  SS SWT KQNK FE AL  Y +DTP+RWQ VA+ VGGKT EEVKRHY++
Sbjct: 1   MASSSM--SSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYEL 60

Query: 61  LLQDLMHIESGKVPLPNYKPI--APNGSMYDDEQRLMKNLKLQ 102
           L+QD+  IE+G VP PNY+      NG +  +E+R M+N++LQ
Sbjct: 61  LVQDINSIENGHVPFPNYRTSGGCTNGRLSQEEKR-MRNMRLQ 100

[Close]

BLAST of CsaV3_2G028790 vs. TAIR10
Match: AT1G75250.1 (RAD-like 6)

HSP 1 Score: 110.9 bits (276), Expect = 4.6e-25
Identity = 51/83 (61.45%), Postives = 63/83 (75.90%), Query Frame = 0


Query: 8  SSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDILLQDLMH 67
          +S +S S WT  QNK FE AL +Y +DTPDRW  VA+AVGGKT EEVKRHYDIL++DL++
Sbjct: 4  NSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLIN 63

Query: 68 IESGKVPLPNYKPIAPNGSMYDD 91
          IE+G+VPLPNYK    N    +D
Sbjct: 64 IETGRVPLPNYKTFESNSRSIND 86

[Close]

BLAST of CsaV3_2G028790 vs. TAIR10
Match: AT2G18328.1 (RAD-like 4)

HSP 1 Score: 98.6 bits (244), Expect = 2.4e-21
Identity = 44/72 (61.11%), Postives = 59/72 (81.94%), Query Frame = 0


Query: 8  SSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDILLQDLMH 67
          SS  S+SSWT +++K+FE AL  + +DTPDRWQK+ARAVGGK+ EEVKRHY++LL+D+  
Sbjct: 3  SSSMSTSSWTAREDKQFEMALAKFDKDTPDRWQKIARAVGGKSTEEVKRHYELLLRDVND 62

Query: 68 IESGKVPLPNYK 80
          IESG+ P P Y+
Sbjct: 63 IESGRYPQPRYR 74

[Close]

BLAST of CsaV3_2G028790 vs. Swiss-Prot
Match: sp|Q1A173|RADL6_ARATH (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 3.0e-26
Identity = 58/94 (61.70%), Postives = 72/94 (76.60%), Query Frame = 0


Query: 8   SSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDILLQDLMH 67
           +S +S S WT  QNK FE AL +Y +DTPDRW  VA+AVGGKT EEVKRHYDIL++DL++
Sbjct: 4   NSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLIN 63

Query: 68  IESGKVPLPNYKPIAPNG-SMYDDEQRLMKNLKL 101
           IE+G+VPLPNYK    N  S+ D + R MKNLK+
Sbjct: 64  IETGRVPLPNYKTFESNSRSINDFDTRKMKNLKI 97

[Close]

BLAST of CsaV3_2G028790 vs. Swiss-Prot
Match: sp|Q8GW75|RADL5_ARATH (Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.5e-25
Identity = 61/104 (58.65%), Postives = 77/104 (74.04%), Query Frame = 0


Query: 1   MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDI 60
           MASSS     +SSSSWT KQNK FE AL +Y +DTPDRWQ VA+AVG K+ EEVKRHYDI
Sbjct: 1   MASSSM----SSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDI 60

Query: 61  LLQDLMHIESGKVPLPNYKPI---APNGSMYDDEQRLMKNLKLQ 102
           L++DLM+IE   VPLP YK +   + +  + D + RLMKN+++Q
Sbjct: 61  LVEDLMNIEQDLVPLPKYKTVDVGSKSRGIDDFDLRLMKNMRIQ 100

[Close]

BLAST of CsaV3_2G028790 vs. Swiss-Prot
Match: sp|Q9SIJ5|RADL2_ARATH (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 5.7e-25
Identity = 60/104 (57.69%), Postives = 75/104 (72.12%), Query Frame = 0


Query: 1   MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDI 60
           MAS S  S G  S SWT+KQNK FE AL +Y +DTPDRW  VARAVGGKTPEE KR YD+
Sbjct: 1   MASGSMSSYG--SGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDL 60

Query: 61  LLQDLMHIESGKVPLPNYKPIAPN---GSMYDDEQRLMKNLKLQ 102
           L++D+  IE+G VP P+YK    N   G + D+E+R M+++KLQ
Sbjct: 61  LVRDIESIENGHVPFPDYKTTTGNSNRGRLRDEEKR-MRSMKLQ 101

[Close]

BLAST of CsaV3_2G028790 vs. Swiss-Prot
Match: sp|F4JVB8|RADL1_ARATH (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 9.8e-25
Identity = 59/103 (57.28%), Postives = 74/103 (71.84%), Query Frame = 0


Query: 1   MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDI 60
           MASSS   S  SS SWT KQNK FE AL  Y +DTP+RWQ VA+ VGGKT EEVKRHY++
Sbjct: 1   MASSSM--SSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYEL 60

Query: 61  LLQDLMHIESGKVPLPNYKPI--APNGSMYDDEQRLMKNLKLQ 102
           L+QD+  IE+G VP PNY+      NG +  +E+R M+N++LQ
Sbjct: 61  LVQDINSIENGHVPFPNYRTSGGCTNGRLSQEEKR-MRNMRLQ 100

[Close]

BLAST of CsaV3_2G028790 vs. Swiss-Prot
Match: sp|Q58FS3|RAD_ANTMA (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 3.2e-23
Identity = 52/94 (55.32%), Postives = 70/94 (74.47%), Query Frame = 0


Query: 8   SSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDILLQDLMH 67
           S+  S   W+ K+NK FE AL +Y +DTPDRW  VARAV G+TPEEVK+HY+IL++D+ +
Sbjct: 3   STRGSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKY 62

Query: 68  IESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKLQ 102
           IESGKVP PNY+     G+M  DE+R  +NLK++
Sbjct: 63  IESGKVPFPNYR--TTGGNMKTDEKR-FRNLKIR 93

[Close]

BLAST of CsaV3_2G028790 vs. TrEMBL
Match: tr|A0A0A0LPB1|A0A0A0LPB1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G361710 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 1.7e-50
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDI 60
           MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDI
Sbjct: 1   MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDI 60

Query: 61  LLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKLQ 102
           LLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKLQ
Sbjct: 61  LLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKLQ 101

[Close]

BLAST of CsaV3_2G028790 vs. TrEMBL
Match: tr|A0A1S3BBS2|A0A1S3BBS2_CUCME (protein RADIALIS-like 4 OS=Cucumis melo OX=3656 GN=LOC103487975 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 5.5e-49
Identity = 98/101 (97.03%), Postives = 99/101 (98.02%), Query Frame = 0


Query: 1   MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDI 60
           MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKT EEVKRHYDI
Sbjct: 1   MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60

Query: 61  LLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKLQ 102
           LLQDLMHIESGKVPLPNYKP+ PNGSMYDDEQRLMKNLKLQ
Sbjct: 61  LLQDLMHIESGKVPLPNYKPVVPNGSMYDDEQRLMKNLKLQ 101

[Close]

BLAST of CsaV3_2G028790 vs. TrEMBL
Match: tr|A0A068UIQ1|A0A068UIQ1_COFCA (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00024780001 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 2.6e-30
Identity = 66/101 (65.35%), Postives = 83/101 (82.18%), Query Frame = 0


Query: 1   MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDI 60
           MASSS  SS +SS SWT KQNK+FE+AL  Y +DTPDRW  +ARAVGGK+ EEV+RHY++
Sbjct: 1   MASSSMTSSRSSSQSWTAKQNKQFEEALATYDKDTPDRWYNIARAVGGKSEEEVRRHYEV 60

Query: 61  LLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKLQ 102
           L++D+M IES +VPLPNY+ +A NG  Y +EQRL+KNLKLQ
Sbjct: 61  LVKDIMQIESDQVPLPNYRSMASNGRGYANEQRLLKNLKLQ 101

[Close]

BLAST of CsaV3_2G028790 vs. TrEMBL
Match: tr|A0A2K2BCW9|A0A2K2BCW9_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G035000v3 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 3.7e-29
Identity = 66/98 (67.35%), Postives = 77/98 (78.57%), Query Frame = 0


Query: 4   SSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDILLQ 63
           S F SS  S SSWT KQNK FE AL +Y +DTPDRWQ VA+AVGGK+PEEVKRHYD L++
Sbjct: 2   SYFTSSTGSGSSWTAKQNKLFEKALAVYDKDTPDRWQNVAKAVGGKSPEEVKRHYDRLVE 61

Query: 64  DLMHIESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKLQ 102
           DL++IESG+ PLPNYKP   NG    +EQRL +NLKLQ
Sbjct: 62  DLVYIESGQAPLPNYKPSGSNGRGLVEEQRLTRNLKLQ 99

[Close]

BLAST of CsaV3_2G028790 vs. TrEMBL
Match: tr|A0A2C9U0P7|A0A2C9U0P7_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_18G023500 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 2.4e-28
Identity = 67/102 (65.69%), Postives = 80/102 (78.43%), Query Frame = 0


Query: 1   MASSSFKSSGN-SSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYD 60
           MAS  F SS + SSSSWT KQNK FE AL LY +DTPDRWQ VA+AVGGK+PEEVK HYD
Sbjct: 1   MASRHFSSSSHGSSSSWTPKQNKLFEKALALYDKDTPDRWQNVAKAVGGKSPEEVKIHYD 60

Query: 61  ILLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKLQ 102
            L++DL++IESG+ PLP YK    NG   D+E+RLMKNL++Q
Sbjct: 61  RLVEDLIYIESGQAPLPTYKATGSNGRGIDEEKRLMKNLRIQ 102

The following BLAST results are available for this feature:

BLAST of CsaV3_2G028790 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004152694.1	2.6e-50	100.00	PREDICTED: protein RADIALIS-like 4 [Cucumis sativus] >KGN62607.1 hypothetical pr...	[more]
XP_008444724.1	8.4e-49	97.03	PREDICTED: protein RADIALIS-like 4 [Cucumis melo]	[more]
XP_022961874.1	1.2e-42	86.14	protein RADIALIS-like 4 [Cucurbita moschata] >XP_022996692.1 protein RADIALIS-li...	[more]
XP_022951683.1	9.3e-40	83.17	protein RADIALIS-like 4 [Cucurbita moschata]	[more]
XP_023538249.1	2.1e-39	82.18	protein RADIALIS-like 4 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsaV3_2G028790 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G19510.1	8.4e-27	58.65	RAD-like 5	[more]
AT2G21650.1	3.2e-26	57.69	Homeodomain-like superfamily protein	[more]
AT4G39250.1	5.4e-26	57.28	RAD-like 1	[more]
AT1G75250.1	4.6e-25	61.45	RAD-like 6	[more]
AT2G18328.1	2.4e-21	61.11	RAD-like 4	[more]

BLAST of CsaV3_2G028790 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q1A173\|RADL6_ARATH	3.0e-26	61.70	Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1	[more]
sp\|Q8GW75\|RADL5_ARATH	1.5e-25	58.65	Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1	[more]
sp\|Q9SIJ5\|RADL2_ARATH	5.7e-25	57.69	Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1	[more]
sp\|F4JVB8\|RADL1_ARATH	9.8e-25	57.28	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]
sp\|Q58FS3\|RAD_ANTMA	3.2e-23	55.32	Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1	[more]

BLAST of CsaV3_2G028790 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LPB1\|A0A0A0LPB1_CUCSA	1.7e-50	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G361710 PE=4 SV=1	[more]
tr\|A0A1S3BBS2\|A0A1S3BBS2_CUCME	5.5e-49	97.03	protein RADIALIS-like 4 OS=Cucumis melo OX=3656 GN=LOC103487975 PE=4 SV=1	[more]
tr\|A0A068UIQ1\|A0A068UIQ1_COFCA	2.6e-30	65.35	Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00024780001 PE=4 ...	[more]
tr\|A0A2K2BCW9\|A0A2K2BCW9_POPTR	3.7e-29	67.35	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G035000v3 PE=...	[more]
tr\|A0A2C9U0P7\|A0A2C9U0P7_MANES	2.4e-28	65.69	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_18G023500 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR009057	Homeobox-like_sf
IPR001005	SANT/Myb

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G028790.1	CsaV3_2G028790.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 12..64 e-value: 2.1E-7 score: 40.6
IPR001005	SANT/Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 15..58 e-value: 4.2E-7 score: 29.9
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 16..58 e-value: 1.89895E-6 score: 39.8662
None	No IPR available	GENE3D	G3DSA:1.10.10.60		coord: 7..75 e-value: 8.4E-21 score: 75.6
None	No IPR available	PANTHER	PTHR43952	FAMILY NOT NAMED	coord: 13..101
None	No IPR available	PANTHER	PTHR43952:SF3	SUBFAMILY NOT NAMED	coord: 13..101
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	SSF46689	Homeodomain-like	coord: 14..70

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_2G028790	CSPI03G42770	Wild cucumber (PI 183967)	cpicucB135
CsaV3_2G028790	CSPI02G20120	Wild cucumber (PI 183967)	cpicucB081
CsaV3_2G028790	Cucsa.342440	Cucumber (Gy14) v1	cgycucB521
CsaV3_2G028790	CmaCh05G002500	Cucurbita maxima (Rimu)	cmacucB0926
CsaV3_2G028790	CmaCh09G001530	Cucurbita maxima (Rimu)	cmacucB0015
CsaV3_2G028790	CmaCh12G004690	Cucurbita maxima (Rimu)	cmacucB0203
CsaV3_2G028790	CmoCh09G001500	Cucurbita moschata (Rifu)	cmocucB0004
CsaV3_2G028790	CmoCh12G004170	Cucurbita moschata (Rifu)	cmocucB0186
CsaV3_2G028790	CmoCh05G002550	Cucurbita moschata (Rifu)	cmocucB0918
CsaV3_2G028790	Cp4.1LG07g04060	Cucurbita pepo (Zucchini)	cpecucB1013
CsaV3_2G028790	Cp4.1LG11g02130	Cucurbita pepo (Zucchini)	cpecucB0106
CsaV3_2G028790	Cp4.1LG02g07540	Cucurbita pepo (Zucchini)	cpecucB0675
CsaV3_2G028790	Cp4.1LG06g01000	Cucurbita pepo (Zucchini)	cpecucB0960
CsaV3_2G028790	CsGy2G019890	Cucumber (Gy14) v2	cgybcucB065
CsaV3_2G028790	Carg08719	Silver-seed gourd	carcucB0119
CsaV3_2G028790	Carg04049	Silver-seed gourd	carcucB1017
CsaV3_2G028790	Cla020769	Watermelon (97103) v1	cucwmB138
CsaV3_2G028790	Cla022488	Watermelon (97103) v1	cucwmB124
CsaV3_2G028790	MELO3C003827	Melon (DHL92) v3.5.1	cucmeB131
CsaV3_2G028790	ClCG08G015000	Watermelon (Charleston Gray)	cucwcgB176
CsaV3_2G028790	ClCG05G018910	Watermelon (Charleston Gray)	cucwcgB150
CsaV3_2G028790	Lsi04G016700	Bottle gourd (USVL1VR-Ls)	cuclsiB130
CsaV3_2G028790	MELO3C003827.2	Melon (DHL92) v3.6.1	cucmedB124
CsaV3_2G028790	MELO3C030327.2	Melon (DHL92) v3.6.1	cucmedB118
CsaV3_2G028790	Cla97C08G158570	Watermelon (97103) v2	cucwmbB164
CsaV3_2G028790	Bhi04G000152	Wax gourd	cucwgoB162

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_2G028790	Cucumber (Chinese Long) v3	cuccucB068
CsaV3_2G028790	Silver-seed gourd	carcucB0209
CsaV3_2G028790	Silver-seed gourd	carcucB0436
CsaV3_2G028790	Silver-seed gourd	carcucB0795
CsaV3_2G028790	Silver-seed gourd	carcucB0988
CsaV3_2G028790	Cucumber (Gy14) v2	cgybcucB110
CsaV3_2G028790	Cucumber (Gy14) v2	cgybcucB258
CsaV3_2G028790	Cucumber (Gy14) v1	cgycucB347
CsaV3_2G028790	Cucurbita maxima (Rimu)	cmacucB0524
CsaV3_2G028790	Cucurbita maxima (Rimu)	cmacucB0783
CsaV3_2G028790	Cucurbita maxima (Rimu)	cmacucB1010
CsaV3_2G028790	Cucurbita moschata (Rifu)	cmocucB0510
CsaV3_2G028790	Cucurbita moschata (Rifu)	cmocucB0766
CsaV3_2G028790	Cucurbita moschata (Rifu)	cmocucB0994
CsaV3_2G028790	Cucurbita pepo (Zucchini)	cpecucB0061
CsaV3_2G028790	Cucurbita pepo (Zucchini)	cpecucB0588
CsaV3_2G028790	Wild cucumber (PI 183967)	cpicucB322
CsaV3_2G028790	Bottle gourd (USVL1VR-Ls)	cuclsiB119
CsaV3_2G028790	Bottle gourd (USVL1VR-Ls)	cuclsiB155
CsaV3_2G028790	Melon (DHL92) v3.5.1	cucmeB124
CsaV3_2G028790	Melon (DHL92) v3.5.1	cucmeB153
CsaV3_2G028790	Melon (DHL92) v3.6.1	cucmedB145
CsaV3_2G028790	Watermelon (Charleston Gray)	cucwcgB124
CsaV3_2G028790	Watermelon (97103) v1	cucwmB144
CsaV3_2G028790	Watermelon (97103) v2	cucwmbB098
CsaV3_2G028790	Watermelon (97103) v2	cucwmbB137