MELO3C003380.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C003380.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	egg cell-secreted protein 1.2-like
Location	chr04 : 716320 .. 716929 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAATCAATCATTCAACCAATCAAAGGAAAAGGGAGTGAAGAAGAAGAAGAAGATCAAACGAACCTGACAATGTCTAAATCTTTTCGATTTTTCGGATTCTTCCTCTGTGCCCTAGCAATTTCATCGTCGTTTCAATCGGCTTTCGCTGTTAGAAAAATTGCGGAGGCGGTTTATTCAGCCGATTGTTGGGACGCGATAAACGCGGTGGAAGGATGCCAGAATCAAATCGACACGGCGATGAAGAGTAATGAGATCGAGGTGAGTTACGATTGTTGTAAAGTGATTTTACATGGAATGCCGGAGAAATGCGCTGCCGTGGTTTTTTCGTCTGGTGGAGAGTTTTCGCCGGAGGTTAGCGGTGCGGTTAACGAGTATTGCGACGGAATGGGAATCACCCCGCCGGTGCTTGAAACGGAGGATACTAAAGTAGACGAAAATTGAAGGGTTAAATAGTAAAATCTCACCGTTTATTCGGATGGTTTTCGATTTCGCTAAATTTTACTTTTTCTTTCTTACTAAATAAAACGGATTTTGTGATATAAAGTATTACTCTAATACTTTATTTCATTTCAAGCCAATATATATTGGTAAAATAATTTAATACAATAA

mRNA sequence

AGAATCAATCATTCAACCAATCAAAGGAAAAGGGAGTGAAGAAGAAGAAGAAGATCAAACGAACCTGACAATGTCTAAATCTTTTCGATTTTTCGGATTCTTCCTCTGTGCCCTAGCAATTTCATCGTCGTTTCAATCGGCTTTCGCTGTTAGAAAAATTGCGGAGGCGGTTTATTCAGCCGATTGTTGGGACGCGATAAACGCGGTGGAAGGATGCCAGAATCAAATCGACACGGCGATGAAGAGTAATGAGATCGAGGTGAGTTACGATTGTTGTAAAGTGATTTTACATGGAATGCCGGAGAAATGCGCTGCCGTGGTTTTTTCGTCTGGTGGAGAGTTTTCGCCGGAGGTTAGCGGTGCGGTTAACGAGTATTGCGACGGAATGGGAATCACCCCGCCGGTGCTTGAAACGGAGGATACTAAAGTAGACGAAAATTGAAGGGTTAAATAGTAAAATCTCACCGTTTATTCGGATGGTTTTCGATTTCGCTAAATTTTACTTTTTCTTTCTTACTAAATAAAACGGATTTTGTGATATAAAGTATTACTCTAATACTTTATTTCATTTCAAGCCAATATATATTGGTAAAATAATTTAATACAATAA

Coding sequence (CDS)

ATGTCTAAATCTTTTCGATTTTTCGGATTCTTCCTCTGTGCCCTAGCAATTTCATCGTCGTTTCAATCGGCTTTCGCTGTTAGAAAAATTGCGGAGGCGGTTTATTCAGCCGATTGTTGGGACGCGATAAACGCGGTGGAAGGATGCCAGAATCAAATCGACACGGCGATGAAGAGTAATGAGATCGAGGTGAGTTACGATTGTTGTAAAGTGATTTTACATGGAATGCCGGAGAAATGCGCTGCCGTGGTTTTTTCGTCTGGTGGAGAGTTTTCGCCGGAGGTTAGCGGTGCGGTTAACGAGTATTGCGACGGAATGGGAATCACCCCGCCGGTGCTTGAAACGGAGGATACTAAAGTAGACGAAAATTGA

Protein sequence

MSKSFRFFGFFLCALAISSSFQSAFAVRKIAEAVYSADCWDAINAVEGCQNQIDTAMKSNEIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPEVSGAVNEYCDGMGITPPVLETEDTKVDEN

Homology

[Close]

BLAST of MELO3C003380.2 vs. NCBI nr
Match: KGN60420.1 (hypothetical protein Csa_3G904090 [Cucumis sativus])

HSP 1 Score: 233.8 bits (595), Expect = 3.1e-58
Identity = 114/123 (92.68%), Postives = 119/123 (96.75%), Query Frame = 0


Query: 1   MSKSFRFFGFFLCALAISSSFQSAFAVRKIAEAVYSADCWDAINAVEGCQNQIDTAMKSN 60
           MSKS RFFGFFLC LA SSSF SAFAVRKIAEAVYS+DCWDAINAV+GCQN+IDTAMKSN
Sbjct: 1   MSKSVRFFGFFLCVLATSSSFHSAFAVRKIAEAVYSSDCWDAINAVKGCQNEIDTAMKSN 60

Query: 61  EIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPEVSGAVNEYCDGMGITPPVLETEDTKV 120
           EIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSP+VSGAVNEYCDGMGITPPVLETEDTKV
Sbjct: 61  EIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGAVNEYCDGMGITPPVLETEDTKV 120

Query: 121 DEN 124
           +EN
Sbjct: 121 EEN 123

[Close]

BLAST of MELO3C003380.2 vs. NCBI nr
Match: XP_022931003.1 (uncharacterized protein LOC111437329 [Cucurbita moschata])

HSP 1 Score: 171.0 bits (432), Expect = 2.5e-39
Identity = 92/124 (74.19%), Postives = 102/124 (82.26%), Query Frame = 0


Query: 1   MSKSFRFFGFFLCALAISSSFQ--SAFAVRKIAEAVYSAD-----CWDAINAVEGCQNQI 60
           M KS RF GF L ALAISSS Q  SAFA+R I EA+ SAD     CWDAI AVEGCQ++I
Sbjct: 1   MLKSVRFVGFLL-ALAISSSIQSESAFALRNIPEALNSADWSAATCWDAITAVEGCQDEI 60

Query: 61  DTAMKSNEIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPEVSGAVNEYCDGMGITPPVL 118
           D AMKSNEIEVS DCC+ ILHG+P+KCAA VFSSGGEFS E+SGAVNEYCDGMGITPPVL
Sbjct: 61  DMAMKSNEIEVSRDCCRAILHGLPDKCAAEVFSSGGEFSAEISGAVNEYCDGMGITPPVL 120

[Close]

BLAST of MELO3C003380.2 vs. NCBI nr
Match: PPR81469.1 (hypothetical protein GOBAR_AA39249 [Gossypium barbadense])

HSP 1 Score: 60.8 bits (146), Expect = 3.6e-06
Identity = 27/73 (36.99%), Postives = 42/73 (57.53%), Query Frame = 0


Query: 39  CWDAINAVEGCQNQIDTAMKSNEIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPEVSGA 98
           CW  IN   GC+++I  ++   +I++SY CC+ +  GM  KC   +F+  G FSPE    
Sbjct: 36  CWAQINKANGCEHEIYASLVKKKIKLSYGCCEAV-QGMSSKCKNWMFNH-GRFSPEFGDQ 95

Query: 99  VNEYCDGMGITPP 112
           +  YC  +G+T P
Sbjct: 96  IKGYCATLGVTLP 106

[Close]

BLAST of MELO3C003380.2 vs. NCBI nr
Match: KJB37695.1 (hypothetical protein B456_006G215900 [Gossypium raimondii])

HSP 1 Score: 58.2 bits (139), Expect = 2.4e-05
Identity = 26/73 (35.62%), Postives = 41/73 (56.16%), Query Frame = 0


Query: 39  CWDAINAVEGCQNQIDTAMKSNEIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPEVSGA 98
           CW  IN  +GC+++I   +   +I++SY CC+ +  GM  KC   +F+  G  SPE    
Sbjct: 46  CWAQINKADGCEHEIYAPLVKKKIKLSYACCEAV-QGMSSKCKNWMFNH-GRLSPEFGDQ 105

Query: 99  VNEYCDGMGITPP 112
           +  YC  +G+T P
Sbjct: 106 IKGYCATLGVTLP 116

[Close]

BLAST of MELO3C003380.2 vs. NCBI nr
Match: PPD78589.1 (hypothetical protein GOBAR_DD24507 [Gossypium barbadense])

HSP 1 Score: 57.4 bits (137), Expect = 4.0e-05
Identity = 26/73 (35.62%), Postives = 41/73 (56.16%), Query Frame = 0


Query: 39  CWDAINAVEGCQNQIDTAMKSNEIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPEVSGA 98
           CW  IN  +GC+++I   +   +I++SY CC+ +  GM  KC   +F+  G  SPE    
Sbjct: 44  CWAQINKADGCEHEIYAPLVKKKIKLSYACCEAV-QGMLSKCKNWMFNH-GRLSPEFGDQ 103

Query: 99  VNEYCDGMGITPP 112
           +  YC  +G+T P
Sbjct: 104 IKGYCATLGVTLP 114

[Close]

BLAST of MELO3C003380.2 vs. TrEMBL
Match: tr|A0A0A0LEG0|A0A0A0LEG0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G904090 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 2.1e-58
Identity = 114/123 (92.68%), Postives = 119/123 (96.75%), Query Frame = 0


Query: 1   MSKSFRFFGFFLCALAISSSFQSAFAVRKIAEAVYSADCWDAINAVEGCQNQIDTAMKSN 60
           MSKS RFFGFFLC LA SSSF SAFAVRKIAEAVYS+DCWDAINAV+GCQN+IDTAMKSN
Sbjct: 1   MSKSVRFFGFFLCVLATSSSFHSAFAVRKIAEAVYSSDCWDAINAVKGCQNEIDTAMKSN 60

Query: 61  EIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPEVSGAVNEYCDGMGITPPVLETEDTKV 120
           EIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSP+VSGAVNEYCDGMGITPPVLETEDTKV
Sbjct: 61  EIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGAVNEYCDGMGITPPVLETEDTKV 120

Query: 121 DEN 124
           +EN
Sbjct: 121 EEN 123

[Close]

BLAST of MELO3C003380.2 vs. TrEMBL
Match: tr|A0A2P5VRJ4|A0A2P5VRJ4_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA39249 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.4e-06
Identity = 27/73 (36.99%), Postives = 42/73 (57.53%), Query Frame = 0


Query: 39  CWDAINAVEGCQNQIDTAMKSNEIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPEVSGA 98
           CW  IN   GC+++I  ++   +I++SY CC+ +  GM  KC   +F+  G FSPE    
Sbjct: 36  CWAQINKANGCEHEIYASLVKKKIKLSYGCCEAV-QGMSSKCKNWMFNH-GRFSPEFGDQ 95

Query: 99  VNEYCDGMGITPP 112
           +  YC  +G+T P
Sbjct: 96  IKGYCATLGVTLP 106

[Close]

BLAST of MELO3C003380.2 vs. TrEMBL
Match: tr|A0A0D2T279|A0A0D2T279_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_006G215900 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.6e-05
Identity = 26/73 (35.62%), Postives = 41/73 (56.16%), Query Frame = 0


Query: 39  CWDAINAVEGCQNQIDTAMKSNEIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPEVSGA 98
           CW  IN  +GC+++I   +   +I++SY CC+ +  GM  KC   +F+  G  SPE    
Sbjct: 46  CWAQINKADGCEHEIYAPLVKKKIKLSYACCEAV-QGMSSKCKNWMFNH-GRLSPEFGDQ 105

Query: 99  VNEYCDGMGITPP 112
           +  YC  +G+T P
Sbjct: 106 IKGYCATLGVTLP 116

[Close]

BLAST of MELO3C003380.2 vs. TrEMBL
Match: tr|A0A2P5QVM7|A0A2P5QVM7_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD24507 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.7e-05
Identity = 26/73 (35.62%), Postives = 41/73 (56.16%), Query Frame = 0


Query: 39  CWDAINAVEGCQNQIDTAMKSNEIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPEVSGA 98
           CW  IN  +GC+++I   +   +I++SY CC+ +  GM  KC   +F+  G  SPE    
Sbjct: 44  CWAQINKADGCEHEIYAPLVKKKIKLSYACCEAV-QGMLSKCKNWMFNH-GRLSPEFGDQ 103

Query: 99  VNEYCDGMGITPP 112
           +  YC  +G+T P
Sbjct: 104 IKGYCATLGVTLP 114

The following BLAST results are available for this feature:

BLAST of MELO3C003380.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN60420.1	3.1e-58	92.68	hypothetical protein Csa_3G904090 [Cucumis sativus]	[more]
XP_022931003.1	2.5e-39	74.19	uncharacterized protein LOC111437329 [Cucurbita moschata]	[more]
PPR81469.1	3.6e-06	36.99	hypothetical protein GOBAR_AA39249 [Gossypium barbadense]	[more]
KJB37695.1	2.4e-05	35.62	hypothetical protein B456_006G215900 [Gossypium raimondii]	[more]
PPD78589.1	4.0e-05	35.62	hypothetical protein GOBAR_DD24507 [Gossypium barbadense]	[more]

BLAST of MELO3C003380.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C003380.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C003380.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LEG0\|A0A0A0LEG0_CUCSA	2.1e-58	92.68	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G904090 PE=4 SV=1	[more]
tr\|A0A2P5VRJ4\|A0A2P5VRJ4_GOSBA	2.4e-06	36.99	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA39249 PE=4 SV...	[more]
tr\|A0A0D2T279\|A0A0D2T279_GOSRA	1.6e-05	35.62	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_006G215900 PE=4 ...	[more]
tr\|A0A2P5QVM7\|A0A2P5QVM7_GOSBA	2.7e-05	35.62	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD24507 PE=4 SV...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008502	Prolamin-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C003380.2.1	MELO3C003380.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008502	Prolamin-like domain	PFAM	PF05617	Prolamin_like	coord: 38..103 e-value: 5.2E-8 score: 32.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C003380.2	Csa3G904090	Cucumber (Chinese Long) v2	cumedB208
MELO3C003380.2	CSPI03G47030	Wild cucumber (PI 183967)	cpimedB209
MELO3C003380.2	CmaCh19G004470	Cucurbita maxima (Rimu)	cmamedB543
MELO3C003380.2	CmoCh19G004590	Cucurbita moschata (Rifu)	cmomedB529
MELO3C003380.2	CmoCh02G016380	Cucurbita moschata (Rifu)	cmomedB635
MELO3C003380.2	Lsi05G000590	Bottle gourd (USVL1VR-Ls)	lsimedB366
MELO3C003380.2	Cp4.1LG05g02100	Cucurbita pepo (Zucchini)	cpemedB821
MELO3C003380.2	Cp4.1LG15g03470	Cucurbita pepo (Zucchini)	cpemedB267
MELO3C003380.2	CsGy3G044420	Cucumber (Gy14) v2	cgybmedB186
MELO3C003380.2	Cla016155	Watermelon (97103) v1	medwmB340
MELO3C003380.2	Cla97C09G175120	Watermelon (97103) v2	medwmbB354
MELO3C003380.2	CsaV3_1G016960	Cucumber (Chinese Long) v3	cucmedB067

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C003380.2	Cucumber (Gy14) v2	cgybmedB189
MELO3C003380.2	Cucumber (Gy14) v1	cgymedB517
MELO3C003380.2	Cucumber (Gy14) v1	cgymedB532
MELO3C003380.2	Cucurbita maxima (Rimu)	cmamedB334
MELO3C003380.2	Cucurbita maxima (Rimu)	cmamedB647
MELO3C003380.2	Cucurbita moschata (Rifu)	cmomedB320
MELO3C003380.2	Cucurbita moschata (Rifu)	cmomedB848
MELO3C003380.2	Cucurbita pepo (Zucchini)	cpemedB222
MELO3C003380.2	Wild cucumber (PI 183967)	cpimedB213
MELO3C003380.2	Cucumber (Chinese Long) v2	cumedB212
MELO3C003380.2	Melon (DHL92) v3.6.1	medmedB137
MELO3C003380.2	Melon (DHL92) v3.6.1	medmedB138
MELO3C003380.2	Bottle gourd (USVL1VR-Ls)	lsimedB458
MELO3C003380.2	Watermelon (Charleston Gray)	medwcgB305
MELO3C003380.2	Watermelon (Charleston Gray)	medwcgB312
MELO3C003380.2	Watermelon (97103) v1	medwmB345
MELO3C003380.2	Silver-seed gourd	carmedB0096
MELO3C003380.2	Silver-seed gourd	carmedB0575
MELO3C003380.2	Silver-seed gourd	carmedB0715
MELO3C003380.2	Silver-seed gourd	carmedB0784
MELO3C003380.2	Cucumber (Chinese Long) v3	cucmedB212
MELO3C003380.2	Cucumber (Chinese Long) v3	cucmedB215
MELO3C003380.2	Cucumber (Chinese Long) v3	cucmedB220
MELO3C003380.2	Watermelon (97103) v2	medwmbB307
MELO3C003380.2	Watermelon (97103) v2	medwmbB327
MELO3C003380.2	Wax gourd	medwgoB379
MELO3C003380.2	Wax gourd	medwgoB401
MELO3C003380.2	Wax gourd	medwgoB403
MELO3C003380.2	Wax gourd	medwgoB431