CsGy3G044420 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy3G044420
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	ECA1 gametogenesis related family protein
Location	Chr3 : 41146891 .. 41147262 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGAAATCTGTTCGATTTTTCGGATTCTTCCTCTGTGTCCTAGCAACTTCATCGTCGTTTCACTCGGCTTTCGCTGTTAGAAAAATTGCGGAGGCGGTTTATTCATCCGATTGTTGGGACGCGATAAACGCGGTGAAAGGATGTCAGAATGAAATCGACACGGCCATGAAGAGTAATGAGATCGAGGTGAGTTACGATTGTTGTAAAGTGATTTTGCATGGAATGCCGGAGAAATGCGCCGCCGTGGTTTTTTCGTCTGGTGGAGAGTTTTCCCCGGATGTTAGCGGTGCGGTTAACGAATATTGCGACGGAATGGGAATTACTCCGCCGGTGCTTGAAACGGAGGATACTAAAGTGGAAGAAAATTGA

mRNA sequence

ATGTCGAAATCTGTTCGATTTTTCGGATTCTTCCTCTGTGTCCTAGCAACTTCATCGTCGTTTCACTCGGCTTTCGCTGTTAGAAAAATTGCGGAGGCGGTTTATTCATCCGATTGTTGGGACGCGATAAACGCGGTGAAAGGATGTCAGAATGAAATCGACACGGCCATGAAGAGTAATGAGATCGAGGTGAGTTACGATTGTTGTAAAGTGATTTTGCATGGAATGCCGGAGAAATGCGCCGCCGTGGTTTTTTCGTCTGGTGGAGAGTTTTCCCCGGATGTTAGCGGTGCGGTTAACGAATATTGCGACGGAATGGGAATTACTCCGCCGGTGCTTGAAACGGAGGATACTAAAGTGGAAGAAAATTGA

Coding sequence (CDS)

ATGTCGAAATCTGTTCGATTTTTCGGATTCTTCCTCTGTGTCCTAGCAACTTCATCGTCGTTTCACTCGGCTTTCGCTGTTAGAAAAATTGCGGAGGCGGTTTATTCATCCGATTGTTGGGACGCGATAAACGCGGTGAAAGGATGTCAGAATGAAATCGACACGGCCATGAAGAGTAATGAGATCGAGGTGAGTTACGATTGTTGTAAAGTGATTTTGCATGGAATGCCGGAGAAATGCGCCGCCGTGGTTTTTTCGTCTGGTGGAGAGTTTTCCCCGGATGTTAGCGGTGCGGTTAACGAATATTGCGACGGAATGGGAATTACTCCGCCGGTGCTTGAAACGGAGGATACTAAAGTGGAAGAAAATTGA

Protein sequence

MSKSVRFFGFFLCVLATSSSFHSAFAVRKIAEAVYSSDCWDAINAVKGCQNEIDTAMKSNEIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGAVNEYCDGMGITPPVLETEDTKVEEN

Homology

[Close]

BLAST of CsGy3G044420 vs. NCBI nr
Match: KGN60420.1 (hypothetical protein Csa_3G904090 [Cucumis sativus])

HSP 1 Score: 251.1 bits (640), Expect = 1.9e-63
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MSKSVRFFGFFLCVLATSSSFHSAFAVRKIAEAVYSSDCWDAINAVKGCQNEIDTAMKSN 60
           MSKSVRFFGFFLCVLATSSSFHSAFAVRKIAEAVYSSDCWDAINAVKGCQNEIDTAMKSN
Sbjct: 1   MSKSVRFFGFFLCVLATSSSFHSAFAVRKIAEAVYSSDCWDAINAVKGCQNEIDTAMKSN 60

Query: 61  EIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGAVNEYCDGMGITPPVLETEDTKV 120
           EIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGAVNEYCDGMGITPPVLETEDTKV
Sbjct: 61  EIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGAVNEYCDGMGITPPVLETEDTKV 120

Query: 121 EEN 124
           EEN
Sbjct: 121 EEN 123

[Close]

BLAST of CsGy3G044420 vs. NCBI nr
Match: XP_022931003.1 (uncharacterized protein LOC111437329 [Cucurbita moschata])

HSP 1 Score: 166.4 bits (420), Expect = 6.1e-38
Identity = 85/123 (69.11%), Postives = 99/123 (80.49%), Query Frame = 0


Query: 1   MSKSVRFFGFFLCVLATSS-SFHSAFAVRKIAEAVYSSD-----CWDAINAVKGCQNEID 60
           M KSVRF GF L +  +SS    SAFA+R I EA+ S+D     CWDAI AV+GCQ+EID
Sbjct: 1   MLKSVRFVGFLLALAISSSIQSESAFALRNIPEALNSADWSAATCWDAITAVEGCQDEID 60

Query: 61  TAMKSNEIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGAVNEYCDGMGITPPVLE 118
            AMKSNEIEVS DCC+ ILHG+P+KCAA VFSSGGEFS ++SGAVNEYCDGMGITPPVLE
Sbjct: 61  MAMKSNEIEVSRDCCRAILHGLPDKCAAEVFSSGGEFSAEISGAVNEYCDGMGITPPVLE 120

[Close]

BLAST of CsGy3G044420 vs. NCBI nr
Match: PPR81469.1 (hypothetical protein GOBAR_AA39249 [Gossypium barbadense])

HSP 1 Score: 60.8 bits (146), Expect = 3.6e-06
Identity = 27/73 (36.99%), Postives = 42/73 (57.53%), Query Frame = 0


Query: 39  CWDAINAVKGCQNEIDTAMKSNEIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGA 98
           CW  IN   GC++EI  ++   +I++SY CC+ +  GM  KC   +F+  G FSP+    
Sbjct: 36  CWAQINKANGCEHEIYASLVKKKIKLSYGCCEAV-QGMSSKCKNWMFNH-GRFSPEFGDQ 95

Query: 99  VNEYCDGMGITPP 112
           +  YC  +G+T P
Sbjct: 96  IKGYCATLGVTLP 106

[Close]

BLAST of CsGy3G044420 vs. NCBI nr
Match: KJB37695.1 (hypothetical protein B456_006G215900 [Gossypium raimondii])

HSP 1 Score: 57.0 bits (136), Expect = 5.2e-05
Identity = 26/73 (35.62%), Postives = 40/73 (54.79%), Query Frame = 0


Query: 39  CWDAINAVKGCQNEIDTAMKSNEIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGA 98
           CW  IN   GC++EI   +   +I++SY CC+ +  GM  KC   +F+  G  SP+    
Sbjct: 46  CWAQINKADGCEHEIYAPLVKKKIKLSYACCEAV-QGMSSKCKNWMFNH-GRLSPEFGDQ 105

Query: 99  VNEYCDGMGITPP 112
           +  YC  +G+T P
Sbjct: 106 IKGYCATLGVTLP 116

[Close]

BLAST of CsGy3G044420 vs. NCBI nr
Match: PPD78589.1 (hypothetical protein GOBAR_DD24507 [Gossypium barbadense])

HSP 1 Score: 56.2 bits (134), Expect = 8.9e-05
Identity = 26/73 (35.62%), Postives = 40/73 (54.79%), Query Frame = 0


Query: 39  CWDAINAVKGCQNEIDTAMKSNEIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGA 98
           CW  IN   GC++EI   +   +I++SY CC+ +  GM  KC   +F+  G  SP+    
Sbjct: 44  CWAQINKADGCEHEIYAPLVKKKIKLSYACCEAV-QGMLSKCKNWMFNH-GRLSPEFGDQ 103

Query: 99  VNEYCDGMGITPP 112
           +  YC  +G+T P
Sbjct: 104 IKGYCATLGVTLP 114

[Close]

BLAST of CsGy3G044420 vs. TrEMBL
Match: tr|A0A0A0LEG0|A0A0A0LEG0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G904090 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 1.3e-63
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MSKSVRFFGFFLCVLATSSSFHSAFAVRKIAEAVYSSDCWDAINAVKGCQNEIDTAMKSN 60
           MSKSVRFFGFFLCVLATSSSFHSAFAVRKIAEAVYSSDCWDAINAVKGCQNEIDTAMKSN
Sbjct: 1   MSKSVRFFGFFLCVLATSSSFHSAFAVRKIAEAVYSSDCWDAINAVKGCQNEIDTAMKSN 60

Query: 61  EIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGAVNEYCDGMGITPPVLETEDTKV 120
           EIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGAVNEYCDGMGITPPVLETEDTKV
Sbjct: 61  EIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGAVNEYCDGMGITPPVLETEDTKV 120

Query: 121 EEN 124
           EEN
Sbjct: 121 EEN 123

[Close]

BLAST of CsGy3G044420 vs. TrEMBL
Match: tr|A0A2P5VRJ4|A0A2P5VRJ4_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA39249 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.4e-06
Identity = 27/73 (36.99%), Postives = 42/73 (57.53%), Query Frame = 0


Query: 39  CWDAINAVKGCQNEIDTAMKSNEIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGA 98
           CW  IN   GC++EI  ++   +I++SY CC+ +  GM  KC   +F+  G FSP+    
Sbjct: 36  CWAQINKANGCEHEIYASLVKKKIKLSYGCCEAV-QGMSSKCKNWMFNH-GRFSPEFGDQ 95

Query: 99  VNEYCDGMGITPP 112
           +  YC  +G+T P
Sbjct: 96  IKGYCATLGVTLP 106

[Close]

BLAST of CsGy3G044420 vs. TrEMBL
Match: tr|A0A0D2T279|A0A0D2T279_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_006G215900 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.5e-05
Identity = 26/73 (35.62%), Postives = 40/73 (54.79%), Query Frame = 0


Query: 39  CWDAINAVKGCQNEIDTAMKSNEIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGA 98
           CW  IN   GC++EI   +   +I++SY CC+ +  GM  KC   +F+  G  SP+    
Sbjct: 46  CWAQINKADGCEHEIYAPLVKKKIKLSYACCEAV-QGMSSKCKNWMFNH-GRLSPEFGDQ 105

Query: 99  VNEYCDGMGITPP 112
           +  YC  +G+T P
Sbjct: 106 IKGYCATLGVTLP 116

[Close]

BLAST of CsGy3G044420 vs. TrEMBL
Match: tr|A0A2P5QVM7|A0A2P5QVM7_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD24507 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 5.9e-05
Identity = 26/73 (35.62%), Postives = 40/73 (54.79%), Query Frame = 0


Query: 39  CWDAINAVKGCQNEIDTAMKSNEIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGA 98
           CW  IN   GC++EI   +   +I++SY CC+ +  GM  KC   +F+  G  SP+    
Sbjct: 44  CWAQINKADGCEHEIYAPLVKKKIKLSYACCEAV-QGMLSKCKNWMFNH-GRLSPEFGDQ 103

Query: 99  VNEYCDGMGITPP 112
           +  YC  +G+T P
Sbjct: 104 IKGYCATLGVTLP 114

The following BLAST results are available for this feature:

BLAST of CsGy3G044420 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN60420.1	1.9e-63	100.00	hypothetical protein Csa_3G904090 [Cucumis sativus]	[more]
XP_022931003.1	6.1e-38	69.11	uncharacterized protein LOC111437329 [Cucurbita moschata]	[more]
PPR81469.1	3.6e-06	36.99	hypothetical protein GOBAR_AA39249 [Gossypium barbadense]	[more]
KJB37695.1	5.2e-05	35.62	hypothetical protein B456_006G215900 [Gossypium raimondii]	[more]
PPD78589.1	8.9e-05	35.62	hypothetical protein GOBAR_DD24507 [Gossypium barbadense]	[more]

BLAST of CsGy3G044420 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy3G044420 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy3G044420 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LEG0\|A0A0A0LEG0_CUCSA	1.3e-63	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G904090 PE=4 SV=1	[more]
tr\|A0A2P5VRJ4\|A0A2P5VRJ4_GOSBA	2.4e-06	36.99	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA39249 PE=4 SV...	[more]
tr\|A0A0D2T279\|A0A0D2T279_GOSRA	3.5e-05	35.62	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_006G215900 PE=4 ...	[more]
tr\|A0A2P5QVM7\|A0A2P5QVM7_GOSBA	5.9e-05	35.62	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD24507 PE=4 SV...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008502	Prolamin-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G044420.1	CsGy3G044420.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008502	Prolamin-like domain	PFAM	PF05617	Prolamin_like	coord: 38..103 e-value: 3.7E-8 score: 33.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy3G044420	Cla016155	Watermelon (97103) v1	cgybwmB170
CsGy3G044420	Csa3G904090	Cucumber (Chinese Long) v2	cgybcuB110
CsGy3G044420	MELO3C003380	Melon (DHL92) v3.5.1	cgybmeB185
CsGy3G044420	CSPI03G47030	Wild cucumber (PI 183967)	cgybcpiB111
CsGy3G044420	CmaCh19G004470	Cucurbita maxima (Rimu)	cgybcmaB382
CsGy3G044420	CmoCh02G016380	Cucurbita moschata (Rifu)	cgybcmoB369
CsGy3G044420	CmoCh19G004590	Cucurbita moschata (Rifu)	cgybcmoB354
CsGy3G044420	Lsi05G000590	Bottle gourd (USVL1VR-Ls)	cgyblsiB200
CsGy3G044420	Cp4.1LG05g02100	Cucurbita pepo (Zucchini)	cgybcpeB425
CsGy3G044420	Cp4.1LG15g03470	Cucurbita pepo (Zucchini)	cgybcpeB337
CsGy3G044420	MELO3C003380.2	Melon (DHL92) v3.6.1	cgybmedB186
CsGy3G044420	CsaV3_1G016960	Cucumber (Chinese Long) v3	cgybcucB103
CsGy3G044420	Cla97C09G175120	Watermelon (97103) v2	cgybwmbB242

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy3G044420	Cucurbita moschata (Rifu)	cgybcmoB414
CsGy3G044420	Cucumber (Gy14) v2	cgybcgybB080
CsGy3G044420	Cucumber (Gy14) v2	cgybcgybB081
CsGy3G044420	Cucurbita maxima (Rimu)	cgybcmaB335
CsGy3G044420	Cucurbita maxima (Rimu)	cgybcmaB397
CsGy3G044420	Cucurbita maxima (Rimu)	cgybcmaB447
CsGy3G044420	Cucurbita moschata (Rifu)	cgybcmoB306
CsGy3G044420	Cucurbita pepo (Zucchini)	cgybcpeB322
CsGy3G044420	Cucurbita pepo (Zucchini)	cgybcpeB412
CsGy3G044420	Cucumber (Chinese Long) v2	cgybcuB113
CsGy3G044420	Cucumber (Chinese Long) v2	cgybcuB114
CsGy3G044420	Bottle gourd (USVL1VR-Ls)	cgyblsiB210
CsGy3G044420	Bottle gourd (USVL1VR-Ls)	cgyblsiB218
CsGy3G044420	Melon (DHL92) v3.5.1	cgybmeB205
CsGy3G044420	Melon (DHL92) v3.5.1	cgybmeB214
CsGy3G044420	Melon (DHL92) v3.6.1	cgybmedB207
CsGy3G044420	Melon (DHL92) v3.6.1	cgybmedB212
CsGy3G044420	Watermelon (Charleston Gray)	cgybwcgB162
CsGy3G044420	Watermelon (Charleston Gray)	cgybwcgB176
CsGy3G044420	Watermelon (Charleston Gray)	cgybwcgB213
CsGy3G044420	Watermelon (97103) v1	cgybwmB191
CsGy3G044420	Watermelon (97103) v1	cgybwmB227
CsGy3G044420	Wild cucumber (PI 183967)	cgybcpiB113
CsGy3G044420	Wild cucumber (PI 183967)	cgybcpiB115
CsGy3G044420	Silver-seed gourd	carcgybB0100
CsGy3G044420	Silver-seed gourd	carcgybB0568
CsGy3G044420	Silver-seed gourd	carcgybB0705
CsGy3G044420	Silver-seed gourd	carcgybB0774
CsGy3G044420	Cucumber (Chinese Long) v3	cgybcucB117
CsGy3G044420	Cucumber (Chinese Long) v3	cgybcucB119
CsGy3G044420	Cucumber (Chinese Long) v3	cgybcucB121
CsGy3G044420	Watermelon (97103) v2	cgybwmbB176
CsGy3G044420	Watermelon (97103) v2	cgybwmbB204
CsGy3G044420	Wax gourd	cgybwgoB232
CsGy3G044420	Wax gourd	cgybwgoB270
CsGy3G044420	Wax gourd	cgybwgoB297
CsGy3G044420	Wax gourd	cgybwgoB328