CsaV3_1G016960 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G016960
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 11492229 .. 11492600 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGAAATCTGTTCGATTTTTCGGATTCTTCCTCTGTGTCCTAGCAACTTCATCGTCGTTTCACTCGGCTTTCGCTGTTAGAAAAATTGCGGAGGCGGTTTACTCATCCGATTGTTGGGACGCGATAAACGCGGTGAAAGGATGTCAGAATGAAATCGACACGCCATGAAGAGTAATGAGATCGAAGGTGAGTTACGATTGTTGTAAAGTGATTTTACATGGAATGCCGGAGAAATGCGCCGCCGTGGTTTTTTCGTCTGGTGGAGAGTTTTCCCCGGATGTTAGCGGTGCGGTTAACGAATATTGCGACGGAATGGGAATTACTCCGCCGGTGCTTGAAACGGAGGATACTAAAGTGGAAGAAAATTGA

mRNA sequence

AGAGTAATGAGATCGAAGGTGAGTTACGATTGTTGTAAAGTGATTTTACATGGAATGCCGGAGAAATGCGCCGCCGTGGTTTTTTCGTCTGGTGGAGAGTTTTCCCCGGATGTTAGCGGTGCGGTTAACGAATATTGCGACGGAATGGGAATTACTCCGCCGGTGCTTGAAACGGAGGATACTAAAGTGGAAGAAAATTGA

Coding sequence (CDS)

AGAGTAATGAGATCGAAGGTGAGTTACGATTGTTGTAAAGTGATTTTACATGGAATGCCGGAGAAATGCGCCGCCGTGGTTTTTTCGTCTGGTGGAGAGTTTTCCCCGGATGTTAGCGGTGCGGTTAACGAATATTGCGACGGAATGGGAATTACTCCGCCGGTGCTTGAAACGGAGGATACTAAAGTGGAAGAAAATTGA

Protein sequence

RVMRSKVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGAVNEYCDGMGITPPVLETEDTKVEEN
Homology
[Close]
BLAST of CsaV3_1G016960 vs. NCBI nr
Match: KGN60420.1 (hypothetical protein Csa_3G904090 [Cucumis sativus])

HSP 1 Score: 130.6 bits (327), Expect = 2.0e-27
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 6   KVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGAVNEYCDGMGITPPVLETEDTKVEE 65
           +VSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGAVNEYCDGMGITPPVLETEDTKVEE
Sbjct: 63  EVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGAVNEYCDGMGITPPVLETEDTKVEE 122

Query: 66  N 67
           N
Sbjct: 123 N 123

[Close]
BLAST of CsaV3_1G016960 vs. NCBI nr
Match: XP_022931003.1 (uncharacterized protein LOC111437329 [Cucurbita moschata])

HSP 1 Score: 100.5 bits (249), Expect = 2.3e-18
Identity = 43/55 (78.18%), Postives = 51/55 (92.73%), Query Frame = 0 

Query: 6   KVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGAVNEYCDGMGITPPVLETED 61
           +VS DCC+ ILHG+P+KCAA VFSSGGEFS ++SGAVNEYCDGMGITPPVLET++
Sbjct: 69  EVSRDCCRAILHGLPDKCAAEVFSSGGEFSAEISGAVNEYCDGMGITPPVLETDE 123

[Close]
BLAST of CsaV3_1G016960 vs. TrEMBL
Match: tr|A0A0A0LEG0|A0A0A0LEG0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G904090 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.3e-27
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 6   KVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGAVNEYCDGMGITPPVLETEDTKVEE 65
           +VSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGAVNEYCDGMGITPPVLETEDTKVEE
Sbjct: 63  EVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGAVNEYCDGMGITPPVLETEDTKVEE 122

Query: 66  N 67
           N
Sbjct: 123 N 123

The following BLAST results are available for this feature:
BLAST of CsaV3_1G016960 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN60420.12.0e-2798.36hypothetical protein Csa_3G904090 [Cucumis sativus][more]
XP_022931003.12.3e-1878.18uncharacterized protein LOC111437329 [Cucurbita moschata][more]
BLAST of CsaV3_1G016960 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G016960 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G016960 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LEG0|A0A0A0LEG0_CUCSA1.3e-2798.36Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G904090 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G016960.1CsaV3_1G016960.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G016960CSPI03G47030Wild cucumber (PI 183967)cpicucB127
CsaV3_1G016960CmaCh19G004470Cucurbita maxima (Rimu)cmacucB0603
CsaV3_1G016960CmoCh19G004590Cucurbita moschata (Rifu)cmocucB0589
CsaV3_1G016960CmoCh02G016380Cucurbita moschata (Rifu)cmocucB0679
CsaV3_1G016960Cp4.1LG15g03470Cucurbita pepo (Zucchini)cpecucB0288
CsaV3_1G016960Cp4.1LG05g02100Cucurbita pepo (Zucchini)cpecucB0876
CsaV3_1G016960CsGy3G044420Cucumber (Gy14) v2cgybcucB103
CsaV3_1G016960Cla016155Watermelon (97103) v1cucwmB002
CsaV3_1G016960MELO3C003380Melon (DHL92) v3.5.1cucmeB071
CsaV3_1G016960Lsi05G000590Bottle gourd (USVL1VR-Ls)cuclsiB066
CsaV3_1G016960MELO3C003380.2Melon (DHL92) v3.6.1cucmedB067
CsaV3_1G016960Cla97C09G175120Watermelon (97103) v2cucwmbB091
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G016960Cucumber (Chinese Long) v3cuccucB019
CsaV3_1G016960Cucumber (Chinese Long) v3cuccucB056
CsaV3_1G016960Silver-seed gourdcarcucB0056
CsaV3_1G016960Silver-seed gourdcarcucB1084
CsaV3_1G016960Cucumber (Gy14) v2cgybcucB002
CsaV3_1G016960Cucumber (Gy14) v1cgycucB290
CsaV3_1G016960Cucumber (Gy14) v1cgycucB482
CsaV3_1G016960Cucurbita maxima (Rimu)cmacucB0241
CsaV3_1G016960Cucurbita maxima (Rimu)cmacucB0255
CsaV3_1G016960Cucurbita maxima (Rimu)cmacucB0476
CsaV3_1G016960Cucurbita moschata (Rifu)cmocucB0228
CsaV3_1G016960Cucurbita moschata (Rifu)cmocucB0241
CsaV3_1G016960Cucurbita moschata (Rifu)cmocucB0459
CsaV3_1G016960Cucurbita pepo (Zucchini)cpecucB0021
CsaV3_1G016960Cucurbita pepo (Zucchini)cpecucB0629
CsaV3_1G016960Wild cucumber (PI 183967)cpicucB001
CsaV3_1G016960Bottle gourd (USVL1VR-Ls)cuclsiB033
CsaV3_1G016960Melon (DHL92) v3.5.1cucmeB014
CsaV3_1G016960Melon (DHL92) v3.6.1cucmedB025
CsaV3_1G016960Watermelon (Charleston Gray)cucwcgB001
CsaV3_1G016960Watermelon (Charleston Gray)cucwcgB024
CsaV3_1G016960Watermelon (97103) v1cucwmB057
CsaV3_1G016960Watermelon (97103) v2cucwmbB008
CsaV3_1G016960Wax gourdcucwgoB039
CsaV3_1G016960Wax gourdcucwgoB078