Cp4.1LG05g02100 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG05g02100
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG05 : 1071114 .. 1071479 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGAAATCGGTTCGGTTTGTCGGCTTCCTCTTAGCTCTAGCGATTTCATCGTCGATTCCATCAGCATTCTCTCTCAGAAACATTCCGGAGTCGCTTTATTCAGCCGATTGGTCAGCGGCGACCTGTTGGGACGCGATAACCGCGGTGGAAGGATGCCAGGACGAGATCGACATGGCGATGAAGAGTAATGAGATCGAGGTGAGTCGCGATTGTTGCAGAGCGATATTACATGGACTGCCGGACAAATGCGCCGCCGAGGTTTTCTCGTCTGGCGGAGAATTTGTGGCGGAAATTAGCGGTGCGGTTAACGAATATTGCGACGGAATGGGAATAACTCCGCCGGTGATTGAGACTGATGAATAA

mRNA sequence

ATGTTGAAATCGGTTCGGTTTGTCGGCTTCCTCTTAGCTCTAGCGATTTCATCGTCGATTCCATCAGCATTCTCTCTCAGAAACATTCCGGAGTCGCTTTATTCAGCCGATTGGTCAGCGGCGACCTGTTGGGACGCGATAACCGCGGTGGAAGGATGCCAGGACGAGATCGACATGGCGATGAAGAGTAATGAGATCGAGGTGAGTCGCGATTGTTGCAGAGCGATATTACATGGACTGCCGGACAAATGCGCCGCCGAGGTTTTCTCGTCTGGCGGAGAATTTGTGGCGGAAATTAGCGGTGCGGTTAACGAATATTGCGACGGAATGGGAATAACTCCGCCGGTGATTGAGACTGATGAATAA

Coding sequence (CDS)

ATGTTGAAATCGGTTCGGTTTGTCGGCTTCCTCTTAGCTCTAGCGATTTCATCGTCGATTCCATCAGCATTCTCTCTCAGAAACATTCCGGAGTCGCTTTATTCAGCCGATTGGTCAGCGGCGACCTGTTGGGACGCGATAACCGCGGTGGAAGGATGCCAGGACGAGATCGACATGGCGATGAAGAGTAATGAGATCGAGGTGAGTCGCGATTGTTGCAGAGCGATATTACATGGACTGCCGGACAAATGCGCCGCCGAGGTTTTCTCGTCTGGCGGAGAATTTGTGGCGGAAATTAGCGGTGCGGTTAACGAATATTGCGACGGAATGGGAATAACTCCGCCGGTGATTGAGACTGATGAATAA

Protein sequence

MLKSVRFVGFLLALAISSSIPSAFSLRNIPESLYSADWSAATCWDAITAVEGCQDEIDMAMKSNEIEVSRDCCRAILHGLPDKCAAEVFSSGGEFVAEISGAVNEYCDGMGITPPVIETDE
Homology
[Close]
BLAST of Cp4.1LG05g02100 vs. TrEMBL
Match: A0A0A0LEG0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G904090 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 2.0e-39
Identity = 85/122 (69.67%), Postives = 100/122 (81.97%), Query Frame = 1 

Query: 1   MLKSVRFVGFLLA-LAISSSIPSAFSLRNIPESLYSADWSAATCWDAITAVEGCQDEIDM 60
           M KSVRF GF L  LA SSS  SAF++R I E++YS+D     CWDAI AV+GCQ+EID 
Sbjct: 1   MSKSVRFFGFFLCVLATSSSFHSAFAVRKIAEAVYSSD-----CWDAINAVKGCQNEIDT 60

Query: 61  AMKSNEIEVSRDCCRAILHGLPDKCAAEVFSSGGEFVAEISGAVNEYCDGMGITPPVIET 120
           AMKSNEIEVS DCC+ ILHG+P+KCAA VFSSGGEF  ++SGAVNEYCDGMGITPPV+ET
Sbjct: 61  AMKSNEIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGAVNEYCDGMGITPPVLET 117

Query: 121 DE 122
           ++
Sbjct: 121 ED 117

[Close]
BLAST of Cp4.1LG05g02100 vs. NCBI nr
Match: gi|700205287|gb|KGN60420.1| (hypothetical protein Csa_3G904090 [Cucumis sativus])

HSP 1 Score: 169.9 bits (429), Expect = 2.8e-39
Identity = 85/122 (69.67%), Postives = 100/122 (81.97%), Query Frame = 1 

Query: 1   MLKSVRFVGFLLA-LAISSSIPSAFSLRNIPESLYSADWSAATCWDAITAVEGCQDEIDM 60
           M KSVRF GF L  LA SSS  SAF++R I E++YS+D     CWDAI AV+GCQ+EID 
Sbjct: 1   MSKSVRFFGFFLCVLATSSSFHSAFAVRKIAEAVYSSD-----CWDAINAVKGCQNEIDT 60

Query: 61  AMKSNEIEVSRDCCRAILHGLPDKCAAEVFSSGGEFVAEISGAVNEYCDGMGITPPVIET 120
           AMKSNEIEVS DCC+ ILHG+P+KCAA VFSSGGEF  ++SGAVNEYCDGMGITPPV+ET
Sbjct: 61  AMKSNEIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGAVNEYCDGMGITPPVLET 117

Query: 121 DE 122
           ++
Sbjct: 121 ED 117

The following BLAST results are available for this feature:
BLAST of Cp4.1LG05g02100 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG05g02100 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LEG0_CUCSA2.0e-3969.67Uncharacterized protein OS=Cucumis sativus GN=Csa_3G904090 PE=4 SV=1[more]
BLAST of Cp4.1LG05g02100 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG05g02100 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700205287|gb|KGN60420.1|2.8e-3969.67hypothetical protein Csa_3G904090 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008502Prolamin-like
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG05g02100.1Cp4.1LG05g02100.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008502Prolamin-like domainPFAMPF05617Prolamin_likecoord: 42..108
score: 1.

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG05g02100CmaCh19G004470Cucurbita maxima (Rimu)cmacpeB551
Cp4.1LG05g02100CmoCh19G004590Cucurbita moschata (Rifu)cmocpeB506
Cp4.1LG05g02100CmoCh02G016380Cucurbita moschata (Rifu)cmocpeB596
Cp4.1LG05g02100Cla016155Watermelon (97103) v1cpewmB684
Cp4.1LG05g02100Csa3G904090Cucumber (Chinese Long) v2cpecuB717
Cp4.1LG05g02100MELO3C003380Melon (DHL92) v3.5.1cpemeB689
Cp4.1LG05g02100CSPI03G47030Wild cucumber (PI 183967)cpecpiB719
Cp4.1LG05g02100Lsi05G000590Bottle gourd (USVL1VR-Ls)cpelsiB621
Cp4.1LG05g02100MELO3C003380.2Melon (DHL92) v3.6.1cpemedB821
Cp4.1LG05g02100CsaV3_1G016960Cucumber (Chinese Long) v3cpecucB0876
Cp4.1LG05g02100CsGy3G044420Cucumber (Gy14) v2cgybcpeB425
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG05g02100Cp4.1LG15g03470Cucurbita pepo (Zucchini)cpecpeB279
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG05g02100Cucumber (Chinese Long) v3cpecucB0894
Cp4.1LG05g02100Cucumber (Chinese Long) v3cpecucB0895
Cp4.1LG05g02100Cucumber (Chinese Long) v3cpecucB0900
Cp4.1LG05g02100Wax gourdcpewgoB0908
Cp4.1LG05g02100Wax gourdcpewgoB0926
Cp4.1LG05g02100Wax gourdcpewgoB0930
Cp4.1LG05g02100Wax gourdcpewgoB0937
Cp4.1LG05g02100Cucurbita pepo (Zucchini)cpecpeB246
Cp4.1LG05g02100Cucumber (Gy14) v1cgycpeB0826
Cp4.1LG05g02100Cucumber (Gy14) v1cgycpeB0853
Cp4.1LG05g02100Cucurbita maxima (Rimu)cmacpeB359
Cp4.1LG05g02100Cucurbita maxima (Rimu)cmacpeB647
Cp4.1LG05g02100Cucurbita maxima (Rimu)cmacpeB844
Cp4.1LG05g02100Cucurbita moschata (Rifu)cmocpeB323
Cp4.1LG05g02100Cucurbita moschata (Rifu)cmocpeB792
Cp4.1LG05g02100Wild cucumber (PI 183967)cpecpiB720
Cp4.1LG05g02100Cucumber (Chinese Long) v2cpecuB718
Cp4.1LG05g02100Bottle gourd (USVL1VR-Ls)cpelsiB630
Cp4.1LG05g02100Watermelon (Charleston Gray)cpewcgB625
Cp4.1LG05g02100Watermelon (Charleston Gray)cpewcgB631
Cp4.1LG05g02100Watermelon (97103) v1cpewmB692
Cp4.1LG05g02100Melon (DHL92) v3.5.1cpemeB700
Cp4.1LG05g02100Cucumber (Gy14) v2cgybcpeB426
Cp4.1LG05g02100Cucumber (Gy14) v2cgybcpeB431
Cp4.1LG05g02100Melon (DHL92) v3.6.1cpemedB830
Cp4.1LG05g02100Melon (DHL92) v3.6.1cpemedB833
Cp4.1LG05g02100Silver-seed gourdcarcpeB0134
Cp4.1LG05g02100Silver-seed gourdcarcpeB0804
Cp4.1LG05g02100Silver-seed gourdcarcpeB0990
Cp4.1LG05g02100Silver-seed gourdcarcpeB1099