Csa3G904090 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G904090
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein; contains IPR008502 (Prolamin-like domain)
LocationChr3 : 39227223 .. 39227844 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAGGGGGTGAAGAAGAAGAAGATCAAACGAACCTGCCAATGTCGAAATCTGTTCGATTTTTCGGATTCTTCCTCTGTGTCCTAGCAACTTCATCGTCGTTTCACTCGGCTTTCGCTGTTAGAAAAATTGCGGAGGCGGTTTACTCATCCGATTGTTGGGACGCGATAAACGCGGTGAAAGGATGTCAGAATGAAATCGACACGGCCATGAAGAGTAATGAGATCGAGGTGAGTTACGATTGTTGTAAAGTGATTTTACATGGAATGCCGGAGAAATGCGCCGCCGTGGTTTTTTCGTCTGGTGGAGAGTTTTCCCCGGATGTTAGCGGTGCGGTTAACGAATATTGCGACGGAATGGGAATTACTCCGCCGGTGCTTGAAACGGAGGATACTAAAGTGGAAGAAAATTGAAGGCTTAAATAGTAAAATCACACCGTTTATTTGGATGGTTTTCGGCTTTTTTTCGCTTAATTTCTTTTCTTTTTTATTACTTTCAACTGCTTGTTTTATTTTTACTTAAATAAAATGGATTTTGTGAAATAAAGTATATAAAGTGATACTTTATTTCATTTCAAGCTAATATATATTGATAAAATAATTTAATATAATAGAGATCGAACT

mRNA sequence

ATGTCGAAATCTGTTCGATTTTTCGGATTCTTCCTCTGTGTCCTAGCAACTTCATCGTCGTTTCACTCGGCTTTCGCTGTTAGAAAAATTGCGGAGGCGGTTTACTCATCCGATTGTTGGGACGCGATAAACGCGGTGAAAGGATGTCAGAATGAAATCGACACGGCCATGAAGAGTAATGAGATCGAGGTGAGTTACGATTGTTGTAAAGTGATTTTACATGGAATGCCGGAGAAATGCGCCGCCGTGGTTTTTTCGTCTGGTGGAGAGTTTTCCCCGGATGTTAGCGGTGCGGTTAACGAATATTGCGACGGAATGGGAATTACTCCGCCGGTGCTTGAAACGGAGGATACTAAAGTGGAAGAAAATTGA

Coding sequence (CDS)

ATGTCGAAATCTGTTCGATTTTTCGGATTCTTCCTCTGTGTCCTAGCAACTTCATCGTCGTTTCACTCGGCTTTCGCTGTTAGAAAAATTGCGGAGGCGGTTTACTCATCCGATTGTTGGGACGCGATAAACGCGGTGAAAGGATGTCAGAATGAAATCGACACGGCCATGAAGAGTAATGAGATCGAGGTGAGTTACGATTGTTGTAAAGTGATTTTACATGGAATGCCGGAGAAATGCGCCGCCGTGGTTTTTTCGTCTGGTGGAGAGTTTTCCCCGGATGTTAGCGGTGCGGTTAACGAATATTGCGACGGAATGGGAATTACTCCGCCGGTGCTTGAAACGGAGGATACTAAAGTGGAAGAAAATTGA

Protein sequence

MSKSVRFFGFFLCVLATSSSFHSAFAVRKIAEAVYSSDCWDAINAVKGCQNEIDTAMKSNEIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGAVNEYCDGMGITPPVLETEDTKVEEN*
Homology
[Close]
BLAST of Csa3G904090 vs. TrEMBL
Match: A0A0A0LEG0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G904090 PE=4 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 6.2e-65
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 1 

Query: 1   MSKSVRFFGFFLCVLATSSSFHSAFAVRKIAEAVYSSDCWDAINAVKGCQNEIDTAMKSN 60
           MSKSVRFFGFFLCVLATSSSFHSAFAVRKIAEAVYSSDCWDAINAVKGCQNEIDTAMKSN
Sbjct: 1   MSKSVRFFGFFLCVLATSSSFHSAFAVRKIAEAVYSSDCWDAINAVKGCQNEIDTAMKSN 60

Query: 61  EIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGAVNEYCDGMGITPPVLETEDTKV 120
           EIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGAVNEYCDGMGITPPVLETEDTKV
Sbjct: 61  EIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGAVNEYCDGMGITPPVLETEDTKV 120

Query: 121 EEN 124
           EEN
Sbjct: 121 EEN 123

[Close]
BLAST of Csa3G904090 vs. TAIR10
Match: AT5G14995.1 (AT5G14995.1 ECA1 gametogenesis related family protein)

HSP 1 Score: 50.8 bits (120), Expect = 6.9e-07
Identity = 29/99 (29.29%), Postives = 47/99 (47.47%), Query Frame = 1 

Query: 5   VRFFGFFLCVLATSSSFHSAFAVRKIAEAVYSSDCWDAINAVKGCQNEIDTAMKSNEIEV 64
           V+    FLCV+      H +    + A+      CW +IN V+GC + +  A K +   +
Sbjct: 7   VKVMFLFLCVIMALLCHHQSEV--QAAQKPSPVACWSSINKVQGCVDAVKAATKGDYKGL 66

Query: 65  SYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGAVNEYC 104
           S DCC + ++G+ + C  +VFS      PD++  V + C
Sbjct: 67  SKDCC-LAIYGLIDDCFPIVFSG----KPDIAVLVKDAC 98

[Close]
BLAST of Csa3G904090 vs. NCBI nr
Match: gi|700205287|gb|KGN60420.1| (hypothetical protein Csa_3G904090 [Cucumis sativus])

HSP 1 Score: 254.6 bits (649), Expect = 8.9e-65
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 1 

Query: 1   MSKSVRFFGFFLCVLATSSSFHSAFAVRKIAEAVYSSDCWDAINAVKGCQNEIDTAMKSN 60
           MSKSVRFFGFFLCVLATSSSFHSAFAVRKIAEAVYSSDCWDAINAVKGCQNEIDTAMKSN
Sbjct: 1   MSKSVRFFGFFLCVLATSSSFHSAFAVRKIAEAVYSSDCWDAINAVKGCQNEIDTAMKSN 60

Query: 61  EIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGAVNEYCDGMGITPPVLETEDTKV 120
           EIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGAVNEYCDGMGITPPVLETEDTKV
Sbjct: 61  EIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGAVNEYCDGMGITPPVLETEDTKV 120

Query: 121 EEN 124
           EEN
Sbjct: 121 EEN 123

The following BLAST results are available for this feature:
BLAST of Csa3G904090 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LEG0_CUCSA6.2e-65100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G904090 PE=4 SV=1[more]
BLAST of Csa3G904090 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G14995.16.9e-0729.29 ECA1 gametogenesis related family protein[more]
BLAST of Csa3G904090 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700205287|gb|KGN60420.1|8.9e-65100.00hypothetical protein Csa_3G904090 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008502Prolamin-like
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006096 glycolytic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0003824 catalytic activity
molecular_function GO:0000287 magnesium ion binding
molecular_function GO:0030955 potassium ion binding
molecular_function GO:0004743 pyruvate kinase activity
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU089112cucumber EST collection version 3.0transcribed_cluster
CU108495cucumber EST collection version 3.0transcribed_cluster
CU121922cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G904090.1Csa3G904090.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU121922CU121922transcribed_cluster
CU089112CU089112transcribed_cluster
CU108495CU108495transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008502Prolamin-like domainPFAMPF05617Prolamin_likecoord: 38..103
score: 3.

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa3G904090Cla016155Watermelon (97103) v1cuwmB180
Csa3G904090MELO3C003380Melon (DHL92) v3.5.1cumeB222
Csa3G904090Lsi05G000590Bottle gourd (USVL1VR-Ls)culsiB213
Csa3G904090MELO3C003380.2Melon (DHL92) v3.6.1cumedB208
Csa3G904090Cla97C09G175120Watermelon (97103) v2cuwmbB252
Csa3G904090CSPI03G47030Wild cucumber (PI 183967)cpicuB120
Csa3G904090CmaCh19G004470Cucurbita maxima (Rimu)cmacuB516
Csa3G904090CmoCh02G016380Cucurbita moschata (Rifu)cmocuB591
Csa3G904090CmoCh19G004590Cucurbita moschata (Rifu)cmocuB505
Csa3G904090Cp4.1LG15g03470Cucurbita pepo (Zucchini)cpecuB243
Csa3G904090Cp4.1LG05g02100Cucurbita pepo (Zucchini)cpecuB717
Csa3G904090CsGy3G044420Cucumber (Gy14) v2cgybcuB110
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G904090Cucumber (Gy14) v2cgybcuB112
Csa3G904090Cucumber (Gy14) v2cgybcuB115
Csa3G904090Melon (DHL92) v3.6.1cumedB229
Csa3G904090Melon (DHL92) v3.6.1cumedB236
Csa3G904090Silver-seed gourdcarcuB0100
Csa3G904090Silver-seed gourdcarcuB0593
Csa3G904090Silver-seed gourdcarcuB0728
Csa3G904090Silver-seed gourdcarcuB0797
Csa3G904090Watermelon (97103) v2cuwmbB183
Csa3G904090Watermelon (97103) v2cuwmbB212
Csa3G904090Wax gourdcuwgoB242
Csa3G904090Wax gourdcuwgoB281
Csa3G904090Wax gourdcuwgoB307
Csa3G904090Wax gourdcuwgoB339
Csa3G904090Cucumber (Chinese Long) v2cucuB086
Csa3G904090Cucumber (Chinese Long) v2cucuB088
Csa3G904090Cucumber (Gy14) v1cgycuB450
Csa3G904090Cucumber (Gy14) v1cgycuB459
Csa3G904090Cucurbita maxima (Rimu)cmacuB324
Csa3G904090Cucurbita maxima (Rimu)cmacuB601
Csa3G904090Cucurbita maxima (Rimu)cmacuB834
Csa3G904090Cucurbita moschata (Rifu)cmocuB313
Csa3G904090Cucurbita moschata (Rifu)cmocuB820
Csa3G904090Melon (DHL92) v3.5.1cumeB241
Csa3G904090Melon (DHL92) v3.5.1cumeB248
Csa3G904090Watermelon (Charleston Gray)cuwcgB175
Csa3G904090Watermelon (Charleston Gray)cuwcgB191
Csa3G904090Watermelon (97103) v1cuwmB204
Csa3G904090Watermelon (97103) v1cuwmB241
Csa3G904090Cucurbita pepo (Zucchini)cpecuB210
Csa3G904090Bottle gourd (USVL1VR-Ls)culsiB224
Csa3G904090Bottle gourd (USVL1VR-Ls)culsiB229