MELO3C003184 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C003184
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionGeneral transcription factor II-I repeat domain-containing protein 2B
Locationchr8 : 30675759 .. 30676296 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ACCTCCATGAATATGGTGCCTCCGTTTCTATTCCTTCTCTTCATCTTCGCCAATGCTTTTTTCAGTTCACTCGCCGCCGCTGCCGCTCCACCACCTACGTCCGCAGAATCGCCTTCTTTAAGAAAGCTTGGGAAGCACCAGAGTACGGCAATTGCTTTTTCCAGTCCTATTGAAGCGCCGCGAAGCGAAATGAAAGTCCAGGGGACCTCTGCGGCCAGCGGCGGAGAGAGTGGGAATGCGGTTCAGTTGGGGAATCATGACCATCATAAGTCGAGAGATAAGTCTATCGCCGGCGGAGGTGTGATTTTGGGCGGACTCGCTACGACTTTTTTGGTGGCGATTATATGTTACATTAGAGCTACGAGACGACAGAAAAGTGAACTTGGCTCTTGAGACGACATGTCGTCCGCGTTGTTTGTTTGTTGTGTAATTGTAGTTTTTTTTTAAAGGAGGATGTAATTGTAATTAACCAAAGTATAAAAATGAAAGGCCAAAATACAATGTTTTTTTTTTTTAAATAATAATAATAACAAACTGT

mRNA sequence

ACCTCCATGAATATGGTGCCTCCGTTTCTATTCCTTCTCTTCATCTTCGCCAATGCTTTTTTCAGTTCACTCGCCGCCGCTGCCGCTCCACCACCTACGTCCGCAGAATCGCCTTCTTTAAGAAAGCTTGGGAAGCACCAGAGTACGGCAATTGCTTTTTCCAGTCCTATTGAAGCGCCGCGAAGCGAAATGAAAGTCCAGGGGACCTCTGCGGCCAGCGGCGGAGAGAGTGGGAATGCGGTTCAGTTGGGGAATCATGACCATCATAAGTCGAGAGATAAGTCTATCGCCGGCGGAGGTGTGATTTTGGGCGGACTCGCTACGACTTTTTTGGTGGCGATTATATGTTACATTAGAGCTACGAGACGACAGAAAAGTGAACTTGGCTCTTGAGACGACATGTCGTCCGCGTTGTTTGTTTGTTGTGTAATTGTAGTTTTTTTTTAAAGGAGGATGTAATTGTAATTAACCAAAGTATAAAAATGAAAGGCCAAAATACAATGTTTTTTTTTTTTAAATAATAATAATAACAAACTGT

Coding sequence (CDS)

ATGAATATGGTGCCTCCGTTTCTATTCCTTCTCTTCATCTTCGCCAATGCTTTTTTCAGTTCACTCGCCGCCGCTGCCGCTCCACCACCTACGTCCGCAGAATCGCCTTCTTTAAGAAAGCTTGGGAAGCACCAGAGTACGGCAATTGCTTTTTCCAGTCCTATTGAAGCGCCGCGAAGCGAAATGAAAGTCCAGGGGACCTCTGCGGCCAGCGGCGGAGAGAGTGGGAATGCGGTTCAGTTGGGGAATCATGACCATCATAAGTCGAGAGATAAGTCTATCGCCGGCGGAGGTGTGATTTTGGGCGGACTCGCTACGACTTTTTTGGTGGCGATTATATGTTACATTAGAGCTACGAGACGACAGAAAAGTGAACTTGGCTCTTGA

Protein sequence

MNMVPPFLFLLFIFANAFFSSLAAAAAPPPTSAESPSLRKLGKHQSTAIAFSSPIEAPRSEMKVQGTSAASGGESGNAVQLGNHDHHKSRDKSIAGGGVILGGLATTFLVAIICYIRATRRQKSELGS*
Homology
[Close]
BLAST of MELO3C003184 vs. TrEMBL
Match: A0A0A0KXQ0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G303070 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 4.0e-59
Identity = 118/126 (93.65%), Postives = 122/126 (96.83%), Query Frame = 1 

Query: 3   MVPPFLFLLFIFANAFFSSLAAAAAPPPTSAESPSLRKLGKHQSTAIAFSSPIEAPRSEM 62
           M+PPFLFLLFIFANA FSSLAAAAAPPPTSAESPS+RKLGKHQSTAIAFSSP EAPRS M
Sbjct: 1   MLPPFLFLLFIFANALFSSLAAAAAPPPTSAESPSVRKLGKHQSTAIAFSSPTEAPRSVM 60

Query: 63  KVQGTSAASGGESGNAVQLGNHDHHKSRDKSIAGGGVILGGLATTFLVAIICYIRATRRQ 122
           KVQGTS ASGGESGNAV+LGNHDHHKSRDKSIAGGGVILGGLATTFLVA+ICYIRATRRQ
Sbjct: 61  KVQGTSGASGGESGNAVELGNHDHHKSRDKSIAGGGVILGGLATTFLVAVICYIRATRRQ 120

Query: 123 KSELGS 129
           KSELGS
Sbjct: 121 KSELGS 126

[Close]
BLAST of MELO3C003184 vs. TrEMBL
Match: A0A0D2QBK7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G169200 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 7.0e-19
Identity = 65/144 (45.14%), Postives = 80/144 (55.56%), Query Frame = 1 

Query: 8   LFLLFIFA-NAFFSSLAAAAAPPPT-----SAESPSLRKLGKHQSTAI----AFSSPIEA 67
           LFLL +F  NAF +  A+  AP P       AE+P++RKLGKHQ          SSP +A
Sbjct: 4   LFLLCLFLINAFVAMAASGNAPAPAPGEPYKAEAPTIRKLGKHQLLKTFDNAPASSPSQA 63

Query: 68  PRSEMKVQGTSAASGGE----------------SGNAVQLGNHDHHKSRDKSIAGGGVIL 126
           P ++  +  T  +   +                 G A+ L NH HH S DKS+AGGGVIL
Sbjct: 64  PHTKKNMHPTVGSPSADHTAAITEPNKEENVSVDGEAIHLQNHHHH-SMDKSVAGGGVIL 123

[Close]
BLAST of MELO3C003184 vs. TrEMBL
Match: A0A061ERA0_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_021829 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 7.7e-18
Identity = 62/135 (45.93%), Postives = 78/135 (57.78%), Query Frame = 1 

Query: 20  SSLAAAAAPP---------PTSAESPSLRKLGKHQSTAIAF------SSPIEAPRSEMKV 79
           SSLA    PP         PT+AE+P++RKLGKHQ   +        SSP +AP+ E  +
Sbjct: 29  SSLADVQHPPAPAPYNNEKPTTAEAPTVRKLGKHQPKVVKTFGSAPASSPSQAPQPEKDM 88

Query: 80  QGTSAA-SGGESGNAVQLGNHD-------------HHKSRDKSIAGGGVILGGLATTFLV 126
                + S G++   V+  N +             HH+S DKS+AGGGVILGGLATTFLV
Sbjct: 89  HRIGESPSTGQTAATVERNNGENVSVEGQTIHLQKHHRSVDKSVAGGGVILGGLATTFLV 148

[Close]
BLAST of MELO3C003184 vs. TrEMBL
Match: A0A0D2RCN9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G255600 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 8.5e-17
Identity = 62/135 (45.93%), Postives = 77/135 (57.04%), Query Frame = 1 

Query: 7   FLFLLFIFANAFFSSLAAAAAP-------PPTSAESPSLRKLGKHQSTAIAFSSPIEAP- 66
           FL  L +  NA   S+A A          PP S  +P++R+LGKH+      SSP++AP 
Sbjct: 5   FLLCLVLLFNA---SMAVATTENGETKLHPPAS--TPTIRRLGKHEPPV---SSPLQAPP 64

Query: 67  -------RSEMKVQGTSAASGGESGNAVQLGNHDHHKSRDKSIAGGGVILGGLATTFLVA 126
                   + ++        G E   AV L  H HH S DKSIAGGGVILGGLATTFLVA
Sbjct: 65  HSGGVSPSTTIEANNGENMGGFEGQAAVHLQKHQHH-SMDKSIAGGGVILGGLATTFLVA 124

[Close]
BLAST of MELO3C003184 vs. TrEMBL
Match: A0A067DF27_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g046818mg PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.9e-16
Identity = 53/105 (50.48%), Postives = 72/105 (68.57%), Query Frame = 1 

Query: 21  SLAAAAAPPPTSAESPSLRKLGKHQSTAIAFSSPIEAPRSEMKVQGTSAASGGESGNAVQ 80
           +L+   +P    AE+PS+RKLGKHQ  A AF+ P E+P+     +GT+ +S   + N  +
Sbjct: 18  ALSPPISPDSYKAEAPSIRKLGKHQPAA-AFN-PSESPQPS---KGTTHSSEQTTSNEQE 77

Query: 81  LGNHDHHKSRDKSIAGGGVILGGLATTFLVAIICYIRATRRQKSE 126
           +    +H S D+S+AGGGVILGGLATTFLVA+ CYIRAT R KS+
Sbjct: 78  IHLKKNHHSIDRSVAGGGVILGGLATTFLVAVFCYIRATGRHKSD 117

[Close]
BLAST of MELO3C003184 vs. TAIR10
Match: AT3G09280.1 (AT3G09280.1 unknown protein)

HSP 1 Score: 72.0 bits (175), Expect = 3.0e-13
Identity = 46/114 (40.35%), Postives = 61/114 (53.51%), Query Frame = 1 

Query: 10  LLFIFANAFFSSLAAAAAPPPTSAESPSLRKLGKHQSTAIAFSSPIEAPRSEMKVQGTSA 69
           ++  F   +  S+AAA++     AE P+ RKLG+H           E P  E +    S 
Sbjct: 6   IVLCFLLTYVFSMAAASS----EAEPPATRKLGRH-----------EWPGEEAEAPEVSH 65

Query: 70  ASGGESGNAVQLGNHDHHKSRDKSIAGGGVILGGLATTFLVAIICYIRATRRQK 124
                    V+ G+H  H + ++S+AGGGVILGGLATTFLV + CYIRATR+ K
Sbjct: 66  LE-----ETVRRGHH--HSTVERSVAGGGVILGGLATTFLVVVFCYIRATRKHK 97

[Close]
BLAST of MELO3C003184 vs. NCBI nr
Match: gi|659069182|ref|XP_008448528.1| (PREDICTED: uncharacterized protein LOC103490675 [Cucumis melo])

HSP 1 Score: 251.9 bits (642), Expect = 6.0e-64
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1 

Query: 1   MNMVPPFLFLLFIFANAFFSSLAAAAAPPPTSAESPSLRKLGKHQSTAIAFSSPIEAPRS 60
           MNMVPPFLFLLFIFANAFFSSLAAAAAPPPTSAESPSLRKLGKHQSTAIAFSSPIEAPRS
Sbjct: 1   MNMVPPFLFLLFIFANAFFSSLAAAAAPPPTSAESPSLRKLGKHQSTAIAFSSPIEAPRS 60

Query: 61  EMKVQGTSAASGGESGNAVQLGNHDHHKSRDKSIAGGGVILGGLATTFLVAIICYIRATR 120
           EMKVQGTSAASGGESGNAVQLGNHDHHKSRDKSIAGGGVILGGLATTFLVAIICYIRATR
Sbjct: 61  EMKVQGTSAASGGESGNAVQLGNHDHHKSRDKSIAGGGVILGGLATTFLVAIICYIRATR 120

Query: 121 RQKSELGS 129
           RQKSELGS
Sbjct: 121 RQKSELGS 128

[Close]
BLAST of MELO3C003184 vs. NCBI nr
Match: gi|778693571|ref|XP_011653657.1| (PREDICTED: uncharacterized protein LOC105435242 [Cucumis sativus])

HSP 1 Score: 235.3 bits (599), Expect = 5.8e-59
Identity = 118/126 (93.65%), Postives = 122/126 (96.83%), Query Frame = 1 

Query: 3   MVPPFLFLLFIFANAFFSSLAAAAAPPPTSAESPSLRKLGKHQSTAIAFSSPIEAPRSEM 62
           M+PPFLFLLFIFANA FSSLAAAAAPPPTSAESPS+RKLGKHQSTAIAFSSP EAPRS M
Sbjct: 1   MLPPFLFLLFIFANALFSSLAAAAAPPPTSAESPSVRKLGKHQSTAIAFSSPTEAPRSVM 60

Query: 63  KVQGTSAASGGESGNAVQLGNHDHHKSRDKSIAGGGVILGGLATTFLVAIICYIRATRRQ 122
           KVQGTS ASGGESGNAV+LGNHDHHKSRDKSIAGGGVILGGLATTFLVA+ICYIRATRRQ
Sbjct: 61  KVQGTSGASGGESGNAVELGNHDHHKSRDKSIAGGGVILGGLATTFLVAVICYIRATRRQ 120

Query: 123 KSELGS 129
           KSELGS
Sbjct: 121 KSELGS 126

[Close]
BLAST of MELO3C003184 vs. NCBI nr
Match: gi|823166649|ref|XP_012483276.1| (PREDICTED: uncharacterized protein LOC105797958 [Gossypium raimondii])

HSP 1 Score: 101.7 bits (252), Expect = 1.0e-18
Identity = 65/144 (45.14%), Postives = 80/144 (55.56%), Query Frame = 1 

Query: 8   LFLLFIFA-NAFFSSLAAAAAPPPT-----SAESPSLRKLGKHQSTAI----AFSSPIEA 67
           LFLL +F  NAF +  A+  AP P       AE+P++RKLGKHQ          SSP +A
Sbjct: 4   LFLLCLFLINAFVAMAASGNAPAPAPGEPYKAEAPTIRKLGKHQLLKTFDNAPASSPSQA 63

Query: 68  PRSEMKVQGTSAASGGE----------------SGNAVQLGNHDHHKSRDKSIAGGGVIL 126
           P ++  +  T  +   +                 G A+ L NH HH S DKS+AGGGVIL
Sbjct: 64  PHTKKNMHPTVGSPSADHTAAITEPNKEENVSVDGEAIHLQNHHHH-SMDKSVAGGGVIL 123

[Close]
BLAST of MELO3C003184 vs. NCBI nr
Match: gi|590629022|ref|XP_007026874.1| (Uncharacterized protein TCM_021829 [Theobroma cacao])

HSP 1 Score: 98.2 bits (243), Expect = 1.1e-17
Identity = 62/135 (45.93%), Postives = 78/135 (57.78%), Query Frame = 1 

Query: 20  SSLAAAAAPP---------PTSAESPSLRKLGKHQSTAIAF------SSPIEAPRSEMKV 79
           SSLA    PP         PT+AE+P++RKLGKHQ   +        SSP +AP+ E  +
Sbjct: 29  SSLADVQHPPAPAPYNNEKPTTAEAPTVRKLGKHQPKVVKTFGSAPASSPSQAPQPEKDM 88

Query: 80  QGTSAA-SGGESGNAVQLGNHD-------------HHKSRDKSIAGGGVILGGLATTFLV 126
                + S G++   V+  N +             HH+S DKS+AGGGVILGGLATTFLV
Sbjct: 89  HRIGESPSTGQTAATVERNNGENVSVEGQTIHLQKHHRSVDKSVAGGGVILGGLATTFLV 148

[Close]
BLAST of MELO3C003184 vs. NCBI nr
Match: gi|763749501|gb|KJB16940.1| (hypothetical protein B456_002G255600 [Gossypium raimondii])

HSP 1 Score: 94.7 bits (234), Expect = 1.2e-16
Identity = 62/135 (45.93%), Postives = 77/135 (57.04%), Query Frame = 1 

Query: 7   FLFLLFIFANAFFSSLAAAAAP-------PPTSAESPSLRKLGKHQSTAIAFSSPIEAP- 66
           FL  L +  NA   S+A A          PP S  +P++R+LGKH+      SSP++AP 
Sbjct: 5   FLLCLVLLFNA---SMAVATTENGETKLHPPAS--TPTIRRLGKHEPPV---SSPLQAPP 64

Query: 67  -------RSEMKVQGTSAASGGESGNAVQLGNHDHHKSRDKSIAGGGVILGGLATTFLVA 126
                   + ++        G E   AV L  H HH S DKSIAGGGVILGGLATTFLVA
Sbjct: 65  HSGGVSPSTTIEANNGENMGGFEGQAAVHLQKHQHH-SMDKSIAGGGVILGGLATTFLVA 124

The following BLAST results are available for this feature:
BLAST of MELO3C003184 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KXQ0_CUCSA4.0e-5993.65Uncharacterized protein OS=Cucumis sativus GN=Csa_4G303070 PE=4 SV=1[more]
A0A0D2QBK7_GOSRA7.0e-1945.14Uncharacterized protein OS=Gossypium raimondii GN=B456_006G169200 PE=4 SV=1[more]
A0A061ERA0_THECC7.7e-1845.93Uncharacterized protein OS=Theobroma cacao GN=TCM_021829 PE=4 SV=1[more]
A0A0D2RCN9_GOSRA8.5e-1745.93Uncharacterized protein OS=Gossypium raimondii GN=B456_002G255600 PE=4 SV=1[more]
A0A067DF27_CITSI1.9e-1650.48Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g046818mg PE=4 SV=1[more]
BLAST of MELO3C003184 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G09280.13.0e-1340.35 unknown protein[more]
BLAST of MELO3C003184 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659069182|ref|XP_008448528.1|6.0e-64100.00PREDICTED: uncharacterized protein LOC103490675 [Cucumis melo][more]
gi|778693571|ref|XP_011653657.1|5.8e-5993.65PREDICTED: uncharacterized protein LOC105435242 [Cucumis sativus][more]
gi|823166649|ref|XP_012483276.1|1.0e-1845.14PREDICTED: uncharacterized protein LOC105797958 [Gossypium raimondii][more]
gi|590629022|ref|XP_007026874.1|1.1e-1745.93Uncharacterized protein TCM_021829 [Theobroma cacao][more]
gi|763749501|gb|KJB16940.1|1.2e-1645.93hypothetical protein B456_002G255600 [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU53451melon EST collection version 4.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C003184T1MELO3C003184T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU53451MU53451transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34558FAMILY NOT NAMEDcoord: 1..128
score: 1.0
NoneNo IPR availablePANTHERPTHR34558:SF1F3L24.15 PROTEINcoord: 1..128
score: 1.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C003184Csa4G303070Cucumber (Chinese Long) v2cumeB323
MELO3C003184Cla018167Watermelon (97103) v1mewmB583
MELO3C003184ClCG04G007660Watermelon (Charleston Gray)mewcgB530
MELO3C003184Cla97C04G074350Watermelon (97103) v2mewmbB538
MELO3C003184Bhi03G001615Wax gourdmewgoB638
MELO3C003184CSPI04G15230Wild cucumber (PI 183967)cpimeB322
MELO3C003184Cucsa.066640Cucumber (Gy14) v1cgymeB065
MELO3C003184CmaCh03G003940Cucurbita maxima (Rimu)cmameB619
MELO3C003184CmoCh03G004080Cucurbita moschata (Rifu)cmomeB607
MELO3C003184Lsi01G014810Bottle gourd (USVL1VR-Ls)lsimeB151
MELO3C003184Cp4.1LG10g08230Cucurbita pepo (Zucchini)cpemeB062
MELO3C003184Cp4.1LG19g03240Cucurbita pepo (Zucchini)cpemeB452
MELO3C003184Carg13241Silver-seed gourdcarmeB0584
MELO3C003184Carg19959Silver-seed gourdcarmeB0561
MELO3C003184CsaV3_4G025580Cucumber (Chinese Long) v3cucmeB327
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C003184Wax gourdmewgoB618
MELO3C003184Melon (DHL92) v3.5.1memeB034
MELO3C003184Melon (DHL92) v3.5.1memeB143
MELO3C003184Cucumber (Gy14) v1cgymeB295
MELO3C003184Cucumber (Gy14) v1cgymeB318
MELO3C003184Cucurbita maxima (Rimu)cmameB249
MELO3C003184Cucurbita maxima (Rimu)cmameB712
MELO3C003184Cucurbita maxima (Rimu)cmameB778
MELO3C003184Cucurbita maxima (Rimu)cmameB800
MELO3C003184Cucurbita moschata (Rifu)cmomeB237
MELO3C003184Cucurbita moschata (Rifu)cmomeB765
MELO3C003184Cucurbita moschata (Rifu)cmomeB784
MELO3C003184Wild cucumber (PI 183967)cpimeB255
MELO3C003184Wild cucumber (PI 183967)cpimeB408
MELO3C003184Cucumber (Chinese Long) v2cumeB259
MELO3C003184Cucumber (Chinese Long) v2cumeB411
MELO3C003184Watermelon (Charleston Gray)mewcgB508
MELO3C003184Watermelon (Charleston Gray)mewcgB542
MELO3C003184Watermelon (97103) v1mewmB566
MELO3C003184Watermelon (97103) v1mewmB554
MELO3C003184Cucurbita pepo (Zucchini)cpemeB593
MELO3C003184Cucurbita pepo (Zucchini)cpemeB820
MELO3C003184Bottle gourd (USVL1VR-Ls)lsimeB275
MELO3C003184Bottle gourd (USVL1VR-Ls)lsimeB332
MELO3C003184Cucumber (Gy14) v2cgybmeB226
MELO3C003184Cucumber (Gy14) v2cgybmeB279
MELO3C003184Silver-seed gourdcarmeB0093
MELO3C003184Silver-seed gourdcarmeB0167
MELO3C003184Silver-seed gourdcarmeB0975
MELO3C003184Cucumber (Chinese Long) v3cucmeB262
MELO3C003184Cucumber (Chinese Long) v3cucmeB421
MELO3C003184Watermelon (97103) v2mewmbB519
MELO3C003184Watermelon (97103) v2mewmbB551