ClCG04G007660 (gene) Watermelon (Charleston Gray)

NameClCG04G007660
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionF3L24.15 protein
LocationCG_Chr04 : 22643678 .. 22644097 (-)
   



The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTCCATTTCTATTCCTTCTCTTCATCTTCGTCAATGCTCTTCTCAATTCAGTCTCCGTTGGAGCCGCTCCACCGCCGACCTCTGCCGAATCGCCTTCCGGAAGAAAGCTCGGTAAGCACCACAGTGCGGCGGTTGTTTTTTTGAGTCCGTCTGAAGCGCCACGAAGCGAAATGAAAGTTCAGGGGACCTCGGCGGCGGCAGCGGCGAGCGGTGGAGGGAGTGGGAATGAGATTCAGTTGGAGAATAATCATGAGCATCATAAGTCGAGAGATAAGTCTATCGCCGGCGGCGGCGTGATTTTGGGCGGATTCGCTACCACTTTTCTGGTGGCGATTATATGTTACATTAGAGCTACAAGGCGACAGAAAGCAGAAGTGAACTCAGCTTTTGAGACGACATGTCGTCCGCGTTGTTAG

mRNA sequence

ATGCCTCCATTTCTATTCCTTCTCTTCATCTTCGTCAATGCTCTTCTCAATTCAGTCTCCGTTGGAGCCGCTCCACCGCCGACCTCTGCCGAATCGCCTTCCGGAAGAAAGCTCGGTAAGCACCACAGTGCGGCGGTTGTTTTTTTGAGTCCGTCTGAAGCGCCACGAAGCGAAATGAAAGTTCAGGGGACCTCGGCGGCGGCAGCGGCGAGCGGTGGAGGGAGTGGGAATGAGATTCAGTTGGAGAATAATCATGAGCATCATAAGTCGAGAGATAAGTCTATCGCCGGCGGCGGCGTGATTTTGGGCGGATTCGCTACCACTTTTCTGGTGGCGATTATATGTTACATTAGAGCTACAAGGCGACAGAAAGCAGAAGTGAACTCAGCTTTTGAGACGACATGTCGTCCGCGTTGTTAG

Coding sequence (CDS)

ATGCCTCCATTTCTATTCCTTCTCTTCATCTTCGTCAATGCTCTTCTCAATTCAGTCTCCGTTGGAGCCGCTCCACCGCCGACCTCTGCCGAATCGCCTTCCGGAAGAAAGCTCGGTAAGCACCACAGTGCGGCGGTTGTTTTTTTGAGTCCGTCTGAAGCGCCACGAAGCGAAATGAAAGTTCAGGGGACCTCGGCGGCGGCAGCGGCGAGCGGTGGAGGGAGTGGGAATGAGATTCAGTTGGAGAATAATCATGAGCATCATAAGTCGAGAGATAAGTCTATCGCCGGCGGCGGCGTGATTTTGGGCGGATTCGCTACCACTTTTCTGGTGGCGATTATATGTTACATTAGAGCTACAAGGCGACAGAAAGCAGAAGTGAACTCAGCTTTTGAGACGACATGTCGTCCGCGTTGTTAG

Protein sequence

MPPFLFLLFIFVNALLNSVSVGAAPPPTSAESPSGRKLGKHHSAAVVFLSPSEAPRSEMKVQGTSAAAAASGGGSGNEIQLENNHEHHKSRDKSIAGGGVILGGFATTFLVAIICYIRATRRQKAEVNSAFETTCRPRC
BLAST of ClCG04G007660 vs. TrEMBL
Match: A0A0A0KXQ0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G303070 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 9.4e-46
Identity = 97/129 (75.19%), Postives = 109/129 (84.50%), Query Frame = 1

Query: 1   MPPFLFLLFIFVNALLNSVSVGAAPPPTSAESPSGRKLGKHHSAAVVFLSPSEAPRSEMK 60
           +PPFLFLLFIF NAL +S++  AAPPPTSAESPS RKLGKH S A+ F SP+EAPRS MK
Sbjct: 2   LPPFLFLLFIFANALFSSLAAAAAPPPTSAESPSVRKLGKHQSTAIAFSSPTEAPRSVMK 61

Query: 61  VQGTSAAAAASGGGSGNEIQLENNHEHHKSRDKSIAGGGVILGGFATTFLVAIICYIRAT 120
           VQGTS    ASGG SGN ++L  NH+HHKSRDKSIAGGGVILGG ATTFLVA+ICYIRAT
Sbjct: 62  VQGTS---GASGGESGNAVEL-GNHDHHKSRDKSIAGGGVILGGLATTFLVAVICYIRAT 121

Query: 121 RRQKAEVNS 130
           RRQK+E+ S
Sbjct: 122 RRQKSELGS 126

BLAST of ClCG04G007660 vs. TrEMBL
Match: A0A061ERA0_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_021829 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.1e-17
Identity = 59/125 (47.20%), Postives = 75/125 (60.00%), Query Frame = 1

Query: 27  PTSAESPSGRKLGKHHSAAVVFL------SPSEAPRSEMKVQ--------GTSAAAAASG 86
           PT+AE+P+ RKLGKH    V         SPS+AP+ E  +         G +AA     
Sbjct: 48  PTTAEAPTVRKLGKHQPKVVKTFGSAPASSPSQAPQPEKDMHRIGESPSTGQTAATVERN 107

Query: 87  GGSGNEIQLENNH--EHHKSRDKSIAGGGVILGGFATTFLVAIICYIRATRRQKAEVN-S 135
            G    ++ +  H  +HH+S DKS+AGGGVILGG ATTFLVA+ICYIRAT R K+E + S
Sbjct: 108 NGENVSVEGQTIHLQKHHRSVDKSVAGGGVILGGLATTFLVAVICYIRATGRHKSETHQS 167

BLAST of ClCG04G007660 vs. TrEMBL
Match: A0A0D2QBK7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G169200 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 9.2e-17
Identity = 61/147 (41.50%), Postives = 79/147 (53.74%), Query Frame = 1

Query: 5   LFLLFIF-VNALLNSVSVGAAPPPT-----SAESPSGRKLGKHHSAAVV----FLSPSEA 64
           LFLL +F +NA +   + G AP P       AE+P+ RKLGKH            SPS+A
Sbjct: 4   LFLLCLFLINAFVAMAASGNAPAPAPGEPYKAEAPTIRKLGKHQLLKTFDNAPASSPSQA 63

Query: 65  PRSEMKVQGTSAAAAASGGGSGNEIQLENN-----------HEHHKSRDKSIAGGGVILG 124
           P ++  +  T  + +A    +  E   E N           + HH S DKS+AGGGVILG
Sbjct: 64  PHTKKNMHPTVGSPSADHTAAITEPNKEENVSVDGEAIHLQNHHHHSMDKSVAGGGVILG 123

Query: 125 GFATTFLVAIICYIRATRRQKAEVNSA 131
           G ATTFLVA+ CYIRAT R K E + +
Sbjct: 124 GLATTFLVAVFCYIRATGRHKPETHQS 150

BLAST of ClCG04G007660 vs. TrEMBL
Match: B9T882_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0128720 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 4.6e-16
Identity = 62/136 (45.59%), Postives = 74/136 (54.41%), Query Frame = 1

Query: 1   MPPFLFLLFIFVNALL------NSVSVGAAPPPTSAESPSGRKLGKHHS----AAVVFLS 60
           M   +FL F+ VNA        +     A  P  S  S   RKLGKH S    AA    S
Sbjct: 1   MAQIIFLCFLLVNAFTGPAMASDEFHANAPSPGPSYSSQPPRKLGKHSSIAPQAAKTVHS 60

Query: 61  PSEAPRSEMKVQGTSAAAAASGGGSGNEIQLENNHEHHKSRDKSIAGGGVILGGFATTFL 120
            +E  RS  K+ GT+ +   +G     E Q+ +   HH S DKS+AGGGVI+G  ATTFL
Sbjct: 61  TAEESRSLDKI-GTAPSDLINGENVSLEGQVIHLRGHHHSIDKSVAGGGVIIGSLATTFL 120

Query: 121 VAIICYIRATRRQKAE 127
           VAI CYIRATRR KAE
Sbjct: 121 VAIFCYIRATRRHKAE 135

BLAST of ClCG04G007660 vs. TrEMBL
Match: W9QQS8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_016948 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 7.8e-16
Identity = 53/109 (48.62%), Postives = 67/109 (61.47%), Query Frame = 1

Query: 24  APPPTSAESPSGRKLGKHHS-AAVVFLSPSEAPRSEMKVQGTSAAAAASGGGSGNEIQ-L 83
           AP P+ AE P  RKL KH +  A    SPS +P  E   +      A      G +IQ +
Sbjct: 45  APTPSKAEPPMIRKLAKHQNEVAKSSDSPSPSPNKENASKAEENGLAMIEHNVGVQIQNV 104

Query: 84  ENNHEHHKSRDKSIAGGGVILGGFATTFLVAIICYIRATRRQKAEVNSA 131
             +++HH+S D+S+AGGGVILGG ATTFLVA+ CYIRAT R K E +SA
Sbjct: 105 HLSNKHHRSMDRSVAGGGVILGGLATTFLVAVFCYIRATGRHKNETSSA 153

BLAST of ClCG04G007660 vs. TAIR10
Match: AT3G09280.1 (AT3G09280.1 unknown protein)

HSP 1 Score: 65.9 bits (159), Expect = 2.3e-11
Identity = 41/101 (40.59%), Postives = 50/101 (49.50%), Query Frame = 1

Query: 24  APPPTSAESPSGRKLGKHHSAAVVFLSPSEAPRSEMKVQGTSAAAAASGGGSGNEIQLEN 83
           A   + AE P+ RKLG+H           E P  E +    S            E  +  
Sbjct: 19  AAASSEAEPPATRKLGRH-----------EWPGEEAEAPEVSHL----------EETVRR 78

Query: 84  NHEHHKSRDKSIAGGGVILGGFATTFLVAIICYIRATRRQK 125
            H HH + ++S+AGGGVILGG ATTFLV + CYIRATR+ K
Sbjct: 79  GH-HHSTVERSVAGGGVILGGLATTFLVVVFCYIRATRKHK 97

BLAST of ClCG04G007660 vs. NCBI nr
Match: gi|659069182|ref|XP_008448528.1| (PREDICTED: uncharacterized protein LOC103490675 [Cucumis melo])

HSP 1 Score: 193.4 bits (490), Expect = 2.7e-46
Identity = 100/129 (77.52%), Postives = 109/129 (84.50%), Query Frame = 1

Query: 1   MPPFLFLLFIFVNALLNSVSVGAAPPPTSAESPSGRKLGKHHSAAVVFLSPSEAPRSEMK 60
           +PPFLFLLFIF NA  +S++  AAPPPTSAESPS RKLGKH S A+ F SP EAPRSEMK
Sbjct: 4   VPPFLFLLFIFANAFFSSLAAAAAPPPTSAESPSLRKLGKHQSTAIAFSSPIEAPRSEMK 63

Query: 61  VQGTSAAAAASGGGSGNEIQLENNHEHHKSRDKSIAGGGVILGGFATTFLVAIICYIRAT 120
           VQGTS   AASGG SGN +QL  NH+HHKSRDKSIAGGGVILGG ATTFLVAIICYIRAT
Sbjct: 64  VQGTS---AASGGESGNAVQL-GNHDHHKSRDKSIAGGGVILGGLATTFLVAIICYIRAT 123

Query: 121 RRQKAEVNS 130
           RRQK+E+ S
Sbjct: 124 RRQKSELGS 128

BLAST of ClCG04G007660 vs. NCBI nr
Match: gi|778693571|ref|XP_011653657.1| (PREDICTED: uncharacterized protein LOC105435242 [Cucumis sativus])

HSP 1 Score: 191.0 bits (484), Expect = 1.4e-45
Identity = 97/129 (75.19%), Postives = 109/129 (84.50%), Query Frame = 1

Query: 1   MPPFLFLLFIFVNALLNSVSVGAAPPPTSAESPSGRKLGKHHSAAVVFLSPSEAPRSEMK 60
           +PPFLFLLFIF NAL +S++  AAPPPTSAESPS RKLGKH S A+ F SP+EAPRS MK
Sbjct: 2   LPPFLFLLFIFANALFSSLAAAAAPPPTSAESPSVRKLGKHQSTAIAFSSPTEAPRSVMK 61

Query: 61  VQGTSAAAAASGGGSGNEIQLENNHEHHKSRDKSIAGGGVILGGFATTFLVAIICYIRAT 120
           VQGTS    ASGG SGN ++L  NH+HHKSRDKSIAGGGVILGG ATTFLVA+ICYIRAT
Sbjct: 62  VQGTS---GASGGESGNAVEL-GNHDHHKSRDKSIAGGGVILGGLATTFLVAVICYIRAT 121

Query: 121 RRQKAEVNS 130
           RRQK+E+ S
Sbjct: 122 RRQKSELGS 126

BLAST of ClCG04G007660 vs. NCBI nr
Match: gi|590629022|ref|XP_007026874.1| (Uncharacterized protein TCM_021829 [Theobroma cacao])

HSP 1 Score: 97.8 bits (242), Expect = 1.6e-17
Identity = 59/125 (47.20%), Postives = 75/125 (60.00%), Query Frame = 1

Query: 27  PTSAESPSGRKLGKHHSAAVVFL------SPSEAPRSEMKVQ--------GTSAAAAASG 86
           PT+AE+P+ RKLGKH    V         SPS+AP+ E  +         G +AA     
Sbjct: 48  PTTAEAPTVRKLGKHQPKVVKTFGSAPASSPSQAPQPEKDMHRIGESPSTGQTAATVERN 107

Query: 87  GGSGNEIQLENNH--EHHKSRDKSIAGGGVILGGFATTFLVAIICYIRATRRQKAEVN-S 135
            G    ++ +  H  +HH+S DKS+AGGGVILGG ATTFLVA+ICYIRAT R K+E + S
Sbjct: 108 NGENVSVEGQTIHLQKHHRSVDKSVAGGGVILGGLATTFLVAVICYIRATGRHKSETHQS 167

BLAST of ClCG04G007660 vs. NCBI nr
Match: gi|823166649|ref|XP_012483276.1| (PREDICTED: uncharacterized protein LOC105797958 [Gossypium raimondii])

HSP 1 Score: 94.7 bits (234), Expect = 1.3e-16
Identity = 61/147 (41.50%), Postives = 79/147 (53.74%), Query Frame = 1

Query: 5   LFLLFIF-VNALLNSVSVGAAPPPT-----SAESPSGRKLGKHHSAAVV----FLSPSEA 64
           LFLL +F +NA +   + G AP P       AE+P+ RKLGKH            SPS+A
Sbjct: 4   LFLLCLFLINAFVAMAASGNAPAPAPGEPYKAEAPTIRKLGKHQLLKTFDNAPASSPSQA 63

Query: 65  PRSEMKVQGTSAAAAASGGGSGNEIQLENN-----------HEHHKSRDKSIAGGGVILG 124
           P ++  +  T  + +A    +  E   E N           + HH S DKS+AGGGVILG
Sbjct: 64  PHTKKNMHPTVGSPSADHTAAITEPNKEENVSVDGEAIHLQNHHHHSMDKSVAGGGVILG 123

Query: 125 GFATTFLVAIICYIRATRRQKAEVNSA 131
           G ATTFLVA+ CYIRAT R K E + +
Sbjct: 124 GLATTFLVAVFCYIRATGRHKPETHQS 150

BLAST of ClCG04G007660 vs. NCBI nr
Match: gi|223525263|gb|EEF27931.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 92.4 bits (228), Expect = 6.5e-16
Identity = 62/136 (45.59%), Postives = 74/136 (54.41%), Query Frame = 1

Query: 1   MPPFLFLLFIFVNALL------NSVSVGAAPPPTSAESPSGRKLGKHHS----AAVVFLS 60
           M   +FL F+ VNA        +     A  P  S  S   RKLGKH S    AA    S
Sbjct: 1   MAQIIFLCFLLVNAFTGPAMASDEFHANAPSPGPSYSSQPPRKLGKHSSIAPQAAKTVHS 60

Query: 61  PSEAPRSEMKVQGTSAAAAASGGGSGNEIQLENNHEHHKSRDKSIAGGGVILGGFATTFL 120
            +E  RS  K+ GT+ +   +G     E Q+ +   HH S DKS+AGGGVI+G  ATTFL
Sbjct: 61  TAEESRSLDKI-GTAPSDLINGENVSLEGQVIHLRGHHHSIDKSVAGGGVIIGSLATTFL 120

Query: 121 VAIICYIRATRRQKAE 127
           VAI CYIRATRR KAE
Sbjct: 121 VAIFCYIRATRRHKAE 135

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0KXQ0_CUCSA9.4e-4675.19Uncharacterized protein OS=Cucumis sativus GN=Csa_4G303070 PE=4 SV=1[more]
A0A061ERA0_THECC1.1e-1747.20Uncharacterized protein OS=Theobroma cacao GN=TCM_021829 PE=4 SV=1[more]
A0A0D2QBK7_GOSRA9.2e-1741.50Uncharacterized protein OS=Gossypium raimondii GN=B456_006G169200 PE=4 SV=1[more]
B9T882_RICCO4.6e-1645.59Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0128720 PE=4 SV=1[more]
W9QQS8_9ROSA7.8e-1648.62Uncharacterized protein OS=Morus notabilis GN=L484_016948 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G09280.12.3e-1140.59 unknown protein[more]
Match NameE-valueIdentityDescription
gi|659069182|ref|XP_008448528.1|2.7e-4677.52PREDICTED: uncharacterized protein LOC103490675 [Cucumis melo][more]
gi|778693571|ref|XP_011653657.1|1.4e-4575.19PREDICTED: uncharacterized protein LOC105435242 [Cucumis sativus][more]
gi|590629022|ref|XP_007026874.1|1.6e-1747.20Uncharacterized protein TCM_021829 [Theobroma cacao][more]
gi|823166649|ref|XP_012483276.1|1.3e-1641.50PREDICTED: uncharacterized protein LOC105797958 [Gossypium raimondii][more]
gi|223525263|gb|EEF27931.1|6.5e-1645.59conserved hypothetical protein [Ricinus communis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG04G007660.1ClCG04G007660.1mRNA


Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34558FAMILY NOT NAMEDcoord: 1..138
score: 1.7
NoneNo IPR availablePANTHERPTHR34558:SF1F3L24.15 PROTEINcoord: 1..138
score: 1.7

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG04G007660Cucurbita moschata (Rifu)cmowcgB650
ClCG04G007660Cucurbita moschata (Rifu)cmowcgB742
ClCG04G007660Cucurbita moschata (Rifu)cmowcgB769
ClCG04G007660Wild cucumber (PI 183967)cpiwcgB224
ClCG04G007660Wild cucumber (PI 183967)cpiwcgB404
ClCG04G007660Wild cucumber (PI 183967)cpiwcgB491
ClCG04G007660Cucumber (Chinese Long) v2cuwcgB220
ClCG04G007660Cucumber (Chinese Long) v2cuwcgB387
ClCG04G007660Cucumber (Chinese Long) v2cuwcgB467
ClCG04G007660Melon (DHL92) v3.5.1mewcgB061
ClCG04G007660Melon (DHL92) v3.5.1mewcgB285
ClCG04G007660Melon (DHL92) v3.5.1mewcgB330
ClCG04G007660Watermelon (97103) v1wcgwmB251
ClCG04G007660Watermelon (97103) v1wcgwmB253
ClCG04G007660Watermelon (97103) v1wcgwmB266
ClCG04G007660Cucurbita pepo (Zucchini)cpewcgB382
ClCG04G007660Cucurbita pepo (Zucchini)cpewcgB432
ClCG04G007660Cucurbita pepo (Zucchini)cpewcgB553
ClCG04G007660Cucurbita pepo (Zucchini)cpewcgB785
ClCG04G007660Bottle gourd (USVL1VR-Ls)lsiwcgB240
ClCG04G007660Bottle gourd (USVL1VR-Ls)lsiwcgB241
ClCG04G007660Bottle gourd (USVL1VR-Ls)lsiwcgB282
ClCG04G007660Cucumber (Gy14) v2cgybwcgB202
ClCG04G007660Cucumber (Gy14) v2cgybwcgB282
ClCG04G007660Cucumber (Gy14) v2cgybwcgB429
ClCG04G007660Melon (DHL92) v3.6.1medwcgB276
ClCG04G007660Melon (DHL92) v3.6.1medwcgB324
ClCG04G007660Silver-seed gourdcarwcgB0025
ClCG04G007660Silver-seed gourdcarwcgB0089
ClCG04G007660Silver-seed gourdcarwcgB0156
ClCG04G007660Silver-seed gourdcarwcgB0975
ClCG04G007660Cucumber (Chinese Long) v3cucwcgB224
ClCG04G007660Cucumber (Chinese Long) v3cucwcgB408
ClCG04G007660Cucumber (Chinese Long) v3cucwcgB488
ClCG04G007660Watermelon (97103) v2wcgwmbB195
ClCG04G007660Watermelon (97103) v2wcgwmbB196
ClCG04G007660Watermelon (97103) v2wcgwmbB203
ClCG04G007660Wax gourdwcgwgoB374
ClCG04G007660Wax gourdwcgwgoB380
ClCG04G007660Watermelon (Charleston Gray)wcgwcgB051
ClCG04G007660Watermelon (Charleston Gray)wcgwcgB067
ClCG04G007660Watermelon (Charleston Gray)wcgwcgB150
ClCG04G007660Cucumber (Gy14) v1cgywcgB226
ClCG04G007660Cucumber (Gy14) v1cgywcgB293
ClCG04G007660Cucumber (Gy14) v1cgywcgB316
ClCG04G007660Cucurbita maxima (Rimu)cmawcgB230
ClCG04G007660Cucurbita maxima (Rimu)cmawcgB585
ClCG04G007660Cucurbita maxima (Rimu)cmawcgB649
ClCG04G007660Cucurbita maxima (Rimu)cmawcgB651
ClCG04G007660Cucurbita maxima (Rimu)cmawcgB736
ClCG04G007660Cucurbita maxima (Rimu)cmawcgB768
ClCG04G007660Cucurbita moschata (Rifu)cmowcgB214