Lsi01G014810 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi01G014810
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr01 : 12898272 .. 12898682 (+)
   



The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTCCATTTCTACTCTTTCTCTTCATCCTCGCCAATGCTCTTCTCAATTCAGTCTCCGTCGGAGCCGCTCCACCGCCGACCTCCGCCGAATCGCCTTCCGGAAGAAAGCTCGGGAAGCACCAGAGTACGGCAGTTGTTTTTTCGAGTCCGTCTGAAGCGCCGCGAAGCGAAATGAAAGTTCAGGGGACCTCGGCGGCGGCGAGCGGTGGAGAGAGTGGAAATGAGATTCAGTTGGAAAATCATGAGCATCATAAGTCGAGAGATAAGTCTATCGCCGGTGGCGGCGTGATTTTGGGCGGACTTGCTACTACTTTTCTGGTGGCGGTTATATGTTACATTAGAGCTACGAGGCGACAGAACTCGGAAGTGAACTCAGCTTTTGAGACGACATGTCGTCCGCGTTGTTAG

mRNA sequence

ATGCCTCCATTTCTACTCTTTCTCTTCATCCTCGCCAATGCTCTTCTCAATTCAGTCTCCGTCGGAGCCGCTCCACCGCCGACCTCCGCCGAATCGCCTTCCGGAAGAAAGCTCGGGAAGCACCAGAGTACGGCAGTTGTTTTTTCGAGTCCGTCTGAAGCGCCGCGAAGCGAAATGAAAGTTCAGGGGACCTCGGCGGCGGCGAGCGGTGGAGAGAGTGGAAATGAGATTCAGTTGGAAAATCATGAGCATCATAAGTCGAGAGATAAGTCTATCGCCGGTGGCGGCGTGATTTTGGGCGGACTTGCTACTACTTTTCTGGTGGCGGTTATATGTTACATTAGAGCTACGAGGCGACAGAACTCGGAAGTGAACTCAGCTTTTGAGACGACATGTCGTCCGCGTTGTTAG

Coding sequence (CDS)

ATGCCTCCATTTCTACTCTTTCTCTTCATCCTCGCCAATGCTCTTCTCAATTCAGTCTCCGTCGGAGCCGCTCCACCGCCGACCTCCGCCGAATCGCCTTCCGGAAGAAAGCTCGGGAAGCACCAGAGTACGGCAGTTGTTTTTTCGAGTCCGTCTGAAGCGCCGCGAAGCGAAATGAAAGTTCAGGGGACCTCGGCGGCGGCGAGCGGTGGAGAGAGTGGAAATGAGATTCAGTTGGAAAATCATGAGCATCATAAGTCGAGAGATAAGTCTATCGCCGGTGGCGGCGTGATTTTGGGCGGACTTGCTACTACTTTTCTGGTGGCGGTTATATGTTACATTAGAGCTACGAGGCGACAGAACTCGGAAGTGAACTCAGCTTTTGAGACGACATGTCGTCCGCGTTGTTAG

Protein sequence

MPPFLLFLFILANALLNSVSVGAAPPPTSAESPSGRKLGKHQSTAVVFSSPSEAPRSEMKVQGTSAAASGGESGNEIQLENHEHHKSRDKSIAGGGVILGGLATTFLVAVICYIRATRRQNSEVNSAFETTCRPRC
BLAST of Lsi01G014810 vs. TrEMBL
Match: A0A0A0KXQ0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G303070 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 2.4e-46
Identity = 101/126 (80.16%), Postives = 111/126 (88.10%), Query Frame = 1

Query: 1   MPPFLLFLFILANALLNSVSVGAAPPPTSAESPSGRKLGKHQSTAVVFSSPSEAPRSEMK 60
           +PPFL  LFI ANAL +S++  AAPPPTSAESPS RKLGKHQSTA+ FSSP+EAPRS MK
Sbjct: 2   LPPFLFLLFIFANALFSSLAAAAAPPPTSAESPSVRKLGKHQSTAIAFSSPTEAPRSVMK 61

Query: 61  VQGTSAAASGGESGNEIQLENHEHHKSRDKSIAGGGVILGGLATTFLVAVICYIRATRRQ 120
           VQGTS  ASGGESGN ++L NH+HHKSRDKSIAGGGVILGGLATTFLVAVICYIRATRRQ
Sbjct: 62  VQGTS-GASGGESGNAVELGNHDHHKSRDKSIAGGGVILGGLATTFLVAVICYIRATRRQ 121

Query: 121 NSEVNS 127
            SE+ S
Sbjct: 122 KSELGS 126

BLAST of Lsi01G014810 vs. TrEMBL
Match: A0A061ERA0_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_021829 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 2.4e-17
Identity = 62/125 (49.60%), Postives = 76/125 (60.80%), Query Frame = 1

Query: 27  PTSAESPSGRKLGKHQSTAVVF------SSPSEAPRSEMKVQGTSAAASGGESGNEIQLE 86
           PT+AE+P+ RKLGKHQ   V        SSPS+AP+ E  +     + S G++   ++  
Sbjct: 48  PTTAEAPTVRKLGKHQPKVVKTFGSAPASSPSQAPQPEKDMHRIGESPSTGQTAATVERN 107

Query: 87  NHE-------------HHKSRDKSIAGGGVILGGLATTFLVAVICYIRATRRQNSEVN-S 132
           N E             HH+S DKS+AGGGVILGGLATTFLVAVICYIRAT R  SE + S
Sbjct: 108 NGENVSVEGQTIHLQKHHRSVDKSVAGGGVILGGLATTFLVAVICYIRATGRHKSETHQS 167

BLAST of Lsi01G014810 vs. TrEMBL
Match: A0A0D2QBK7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G169200 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.6e-16
Identity = 66/148 (44.59%), Postives = 82/148 (55.41%), Query Frame = 1

Query: 4   FLLFLFILANALLNSVSVGAAPPPT-----SAESPSGRKLGKHQSTAVV----FSSPSEA 63
           FLL LF++ NA +   + G AP P       AE+P+ RKLGKHQ          SSPS+A
Sbjct: 5   FLLCLFLI-NAFVAMAASGNAPAPAPGEPYKAEAPTIRKLGKHQLLKTFDNAPASSPSQA 64

Query: 64  PRSEMKVQGTSAAASGGES---------------GNEIQLENHEHHKSRDKSIAGGGVIL 123
           P ++  +  T  + S   +               G  I L+NH HH S DKS+AGGGVIL
Sbjct: 65  PHTKKNMHPTVGSPSADHTAAITEPNKEENVSVDGEAIHLQNHHHH-SMDKSVAGGGVIL 124

Query: 124 GGLATTFLVAVICYIRATRRQNSEVNSA 128
           GGLATTFLVAV CYIRAT R   E + +
Sbjct: 125 GGLATTFLVAVFCYIRATGRHKPETHQS 150

BLAST of Lsi01G014810 vs. TrEMBL
Match: W9QQS8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_016948 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.7e-15
Identity = 54/109 (49.54%), Postives = 69/109 (63.30%), Query Frame = 1

Query: 24  APPPTSAESPSGRKLGKHQSTAVVFS-SPSEAPRSEMKVQGTSAAASGGESGNEIQLEN- 83
           AP P+ AE P  RKL KHQ+     S SPS +P  E   +      +  E    +Q++N 
Sbjct: 45  APTPSKAEPPMIRKLAKHQNEVAKSSDSPSPSPNKENASKAEENGLAMIEHNVGVQIQNV 104

Query: 84  ---HEHHKSRDKSIAGGGVILGGLATTFLVAVICYIRATRRQNSEVNSA 128
              ++HH+S D+S+AGGGVILGGLATTFLVAV CYIRAT R  +E +SA
Sbjct: 105 HLSNKHHRSMDRSVAGGGVILGGLATTFLVAVFCYIRATGRHKNETSSA 153

BLAST of Lsi01G014810 vs. TrEMBL
Match: A0A0L9TFM8_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan661s004000 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.1e-14
Identity = 72/165 (43.64%), Postives = 84/165 (50.91%), Query Frame = 1

Query: 1   MPPFLLFLFILANALLNSVSVGAAPPPTSAESPS-----------------------GRK 60
           M  FLL  F LAN LL S++  A  P  + +SPS                       GRK
Sbjct: 1   MAKFLLVCFCLANTLL-SLTNAANQPQINFQSPSTLSSNPPAQSPGDQRSETIEPSIGRK 60

Query: 61  LGKHQSTAVVFS-----SPSEAPRSEMKVQG--------TSAAASGGESGN---EIQLEN 120
           LGKHQ   +  S     +PSEAP+SE  VQ         TS  A  G  G+   +I L  
Sbjct: 61  LGKHQRNEIRSSDSRSPAPSEAPKSEKNVQSGSEGSIERTSIEAENGVLGSHHGQIHL-T 120

Query: 121 HEHHKSRDKSIAGGGVILGGLATTFLVAVICYIRATRRQNSEVNS 127
            +HH S DKSIAG GVILGGLATTFLV+V CYIRAT R   E  +
Sbjct: 121 RQHHHSFDKSIAGAGVILGGLATTFLVSVFCYIRATERNKLETTA 163

BLAST of Lsi01G014810 vs. TAIR10
Match: AT3G09280.1 (AT3G09280.1 unknown protein)

HSP 1 Score: 63.5 bits (153), Expect = 1.1e-10
Identity = 39/96 (40.62%), Postives = 51/96 (53.12%), Query Frame = 1

Query: 24  APPPTSAESPSGRKLGKHQSTAVVFSSPSEAPRSEMKVQGTSAAASGGESGNEIQLENHE 83
           A   + AE P+ RKLG+H+       +P  +   E   +G                    
Sbjct: 19  AAASSEAEPPATRKLGRHEWPGEEAEAPEVSHLEETVRRG-------------------H 78

Query: 84  HHKSRDKSIAGGGVILGGLATTFLVAVICYIRATRR 120
           HH + ++S+AGGGVILGGLATTFLV V CYIRATR+
Sbjct: 79  HHSTVERSVAGGGVILGGLATTFLVVVFCYIRATRK 95

BLAST of Lsi01G014810 vs. NCBI nr
Match: gi|659069182|ref|XP_008448528.1| (PREDICTED: uncharacterized protein LOC103490675 [Cucumis melo])

HSP 1 Score: 194.5 bits (493), Expect = 1.2e-46
Identity = 102/126 (80.95%), Postives = 111/126 (88.10%), Query Frame = 1

Query: 1   MPPFLLFLFILANALLNSVSVGAAPPPTSAESPSGRKLGKHQSTAVVFSSPSEAPRSEMK 60
           +PPFL  LFI ANA  +S++  AAPPPTSAESPS RKLGKHQSTA+ FSSP EAPRSEMK
Sbjct: 4   VPPFLFLLFIFANAFFSSLAAAAAPPPTSAESPSLRKLGKHQSTAIAFSSPIEAPRSEMK 63

Query: 61  VQGTSAAASGGESGNEIQLENHEHHKSRDKSIAGGGVILGGLATTFLVAVICYIRATRRQ 120
           VQGTSAA SGGESGN +QL NH+HHKSRDKSIAGGGVILGGLATTFLVA+ICYIRATRRQ
Sbjct: 64  VQGTSAA-SGGESGNAVQLGNHDHHKSRDKSIAGGGVILGGLATTFLVAIICYIRATRRQ 123

Query: 121 NSEVNS 127
            SE+ S
Sbjct: 124 KSELGS 128

BLAST of Lsi01G014810 vs. NCBI nr
Match: gi|778693571|ref|XP_011653657.1| (PREDICTED: uncharacterized protein LOC105435242 [Cucumis sativus])

HSP 1 Score: 193.0 bits (489), Expect = 3.5e-46
Identity = 101/126 (80.16%), Postives = 111/126 (88.10%), Query Frame = 1

Query: 1   MPPFLLFLFILANALLNSVSVGAAPPPTSAESPSGRKLGKHQSTAVVFSSPSEAPRSEMK 60
           +PPFL  LFI ANAL +S++  AAPPPTSAESPS RKLGKHQSTA+ FSSP+EAPRS MK
Sbjct: 2   LPPFLFLLFIFANALFSSLAAAAAPPPTSAESPSVRKLGKHQSTAIAFSSPTEAPRSVMK 61

Query: 61  VQGTSAAASGGESGNEIQLENHEHHKSRDKSIAGGGVILGGLATTFLVAVICYIRATRRQ 120
           VQGTS  ASGGESGN ++L NH+HHKSRDKSIAGGGVILGGLATTFLVAVICYIRATRRQ
Sbjct: 62  VQGTS-GASGGESGNAVELGNHDHHKSRDKSIAGGGVILGGLATTFLVAVICYIRATRRQ 121

Query: 121 NSEVNS 127
            SE+ S
Sbjct: 122 KSELGS 126

BLAST of Lsi01G014810 vs. NCBI nr
Match: gi|590629022|ref|XP_007026874.1| (Uncharacterized protein TCM_021829 [Theobroma cacao])

HSP 1 Score: 96.7 bits (239), Expect = 3.4e-17
Identity = 62/125 (49.60%), Postives = 76/125 (60.80%), Query Frame = 1

Query: 27  PTSAESPSGRKLGKHQSTAVVF------SSPSEAPRSEMKVQGTSAAASGGESGNEIQLE 86
           PT+AE+P+ RKLGKHQ   V        SSPS+AP+ E  +     + S G++   ++  
Sbjct: 48  PTTAEAPTVRKLGKHQPKVVKTFGSAPASSPSQAPQPEKDMHRIGESPSTGQTAATVERN 107

Query: 87  NHE-------------HHKSRDKSIAGGGVILGGLATTFLVAVICYIRATRRQNSEVN-S 132
           N E             HH+S DKS+AGGGVILGGLATTFLVAVICYIRAT R  SE + S
Sbjct: 108 NGENVSVEGQTIHLQKHHRSVDKSVAGGGVILGGLATTFLVAVICYIRATGRHKSETHQS 167

BLAST of Lsi01G014810 vs. NCBI nr
Match: gi|823166649|ref|XP_012483276.1| (PREDICTED: uncharacterized protein LOC105797958 [Gossypium raimondii])

HSP 1 Score: 93.2 bits (230), Expect = 3.8e-16
Identity = 66/148 (44.59%), Postives = 82/148 (55.41%), Query Frame = 1

Query: 4   FLLFLFILANALLNSVSVGAAPPPT-----SAESPSGRKLGKHQSTAVV----FSSPSEA 63
           FLL LF++ NA +   + G AP P       AE+P+ RKLGKHQ          SSPS+A
Sbjct: 5   FLLCLFLI-NAFVAMAASGNAPAPAPGEPYKAEAPTIRKLGKHQLLKTFDNAPASSPSQA 64

Query: 64  PRSEMKVQGTSAAASGGES---------------GNEIQLENHEHHKSRDKSIAGGGVIL 123
           P ++  +  T  + S   +               G  I L+NH HH S DKS+AGGGVIL
Sbjct: 65  PHTKKNMHPTVGSPSADHTAAITEPNKEENVSVDGEAIHLQNHHHH-SMDKSVAGGGVIL 124

Query: 124 GGLATTFLVAVICYIRATRRQNSEVNSA 128
           GGLATTFLVAV CYIRAT R   E + +
Sbjct: 125 GGLATTFLVAVFCYIRATGRHKPETHQS 150

BLAST of Lsi01G014810 vs. NCBI nr
Match: gi|703069645|ref|XP_010088556.1| (hypothetical protein L484_016948 [Morus notabilis])

HSP 1 Score: 90.5 bits (223), Expect = 2.4e-15
Identity = 54/109 (49.54%), Postives = 69/109 (63.30%), Query Frame = 1

Query: 24  APPPTSAESPSGRKLGKHQSTAVVFS-SPSEAPRSEMKVQGTSAAASGGESGNEIQLEN- 83
           AP P+ AE P  RKL KHQ+     S SPS +P  E   +      +  E    +Q++N 
Sbjct: 45  APTPSKAEPPMIRKLAKHQNEVAKSSDSPSPSPNKENASKAEENGLAMIEHNVGVQIQNV 104

Query: 84  ---HEHHKSRDKSIAGGGVILGGLATTFLVAVICYIRATRRQNSEVNSA 128
              ++HH+S D+S+AGGGVILGGLATTFLVAV CYIRAT R  +E +SA
Sbjct: 105 HLSNKHHRSMDRSVAGGGVILGGLATTFLVAVFCYIRATGRHKNETSSA 153

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KXQ0_CUCSA2.4e-4680.16Uncharacterized protein OS=Cucumis sativus GN=Csa_4G303070 PE=4 SV=1[more]
A0A061ERA0_THECC2.4e-1749.60Uncharacterized protein OS=Theobroma cacao GN=TCM_021829 PE=4 SV=1[more]
A0A0D2QBK7_GOSRA2.6e-1644.59Uncharacterized protein OS=Gossypium raimondii GN=B456_006G169200 PE=4 SV=1[more]
W9QQS8_9ROSA1.7e-1549.54Uncharacterized protein OS=Morus notabilis GN=L484_016948 PE=4 SV=1[more]
A0A0L9TFM8_PHAAN1.1e-1443.64Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan661s004000 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G09280.11.1e-1040.63 unknown protein[more]
Match NameE-valueIdentityDescription
gi|659069182|ref|XP_008448528.1|1.2e-4680.95PREDICTED: uncharacterized protein LOC103490675 [Cucumis melo][more]
gi|778693571|ref|XP_011653657.1|3.5e-4680.16PREDICTED: uncharacterized protein LOC105435242 [Cucumis sativus][more]
gi|590629022|ref|XP_007026874.1|3.4e-1749.60Uncharacterized protein TCM_021829 [Theobroma cacao][more]
gi|823166649|ref|XP_012483276.1|3.8e-1644.59PREDICTED: uncharacterized protein LOC105797958 [Gossypium raimondii][more]
gi|703069645|ref|XP_010088556.1|2.4e-1549.54hypothetical protein L484_016948 [Morus notabilis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G014810.1Lsi01G014810.1mRNA


Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34558FAMILY NOT NAMEDcoord: 1..135
score: 5.4
NoneNo IPR availablePANTHERPTHR34558:SF1F3L24.15 PROTEINcoord: 1..135
score: 5.4

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi01G014810Silver-seed gourdcarlsiB139
Lsi01G014810Silver-seed gourdcarlsiB911
Lsi01G014810Cucumber (Chinese Long) v3cuclsiB186
Lsi01G014810Cucumber (Chinese Long) v3cuclsiB365
Lsi01G014810Watermelon (97103) v2lsiwmbB117
Lsi01G014810Watermelon (97103) v2lsiwmbB146
Lsi01G014810Wax gourdlsiwgoB150
Lsi01G014810Bottle gourd (USVL1VR-Ls)lsilsiB071
Lsi01G014810Bottle gourd (USVL1VR-Ls)lsilsiB077
Lsi01G014810Cucumber (Gy14) v1cgylsiB293
Lsi01G014810Cucurbita maxima (Rimu)cmalsiB231
Lsi01G014810Cucurbita maxima (Rimu)cmalsiB642
Lsi01G014810Cucurbita maxima (Rimu)cmalsiB644
Lsi01G014810Cucurbita maxima (Rimu)cmalsiB748
Lsi01G014810Cucurbita maxima (Rimu)cmalsiB786
Lsi01G014810Cucurbita moschata (Rifu)cmolsiB219
Lsi01G014810Cucurbita moschata (Rifu)cmolsiB630
Lsi01G014810Cucurbita moschata (Rifu)cmolsiB631
Lsi01G014810Cucurbita moschata (Rifu)cmolsiB741
Lsi01G014810Cucurbita moschata (Rifu)cmolsiB774
Lsi01G014810Cucurbita pepo (Zucchini)cpelsiB492
Lsi01G014810Cucurbita pepo (Zucchini)cpelsiB703
Lsi01G014810Wild cucumber (PI 183967)cpilsiB168
Lsi01G014810Wild cucumber (PI 183967)cpilsiB255
Lsi01G014810Wild cucumber (PI 183967)cpilsiB345
Lsi01G014810Cucumber (Chinese Long) v2culsiB169
Lsi01G014810Cucumber (Chinese Long) v2culsiB341
Lsi01G014810Melon (DHL92) v3.5.1lsimeB141
Lsi01G014810Watermelon (Charleston Gray)lsiwcgB119
Lsi01G014810Watermelon (Charleston Gray)lsiwcgB148
Lsi01G014810Watermelon (97103) v1lsiwmB128
Lsi01G014810Cucumber (Gy14) v2cgyblsiB154
Lsi01G014810Cucumber (Gy14) v2cgyblsiB236
Lsi01G014810Melon (DHL92) v3.6.1lsimedB147