Bhi03G001615 (gene) Wax gourd

NameBhi03G001615
Typegene
OrganismBenincasa hispida (Wax gourd)
DescriptionTransforming growth factor beta receptor type 3
Locationchr3 : 44418387 .. 44419145 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTTCCTTTCACCCCCATTCCAATGTCGGATCCAAAAACCCTATTTATTTCCAATCGCTTAATCTCTGTAAATCTCACCTCCCAAAATATGCCTCCATTTCTGTTCCTTCTCTTCATCTTCGCCAATGCTCTTCTCCATTCAGTCTCCGTCGGAGCCGCTCCACCACCGCCCTCCGCCGAAGCGCCTTCCGGAAGAAAGCTCGGGAAGCACCAGAGTACGGCGGTTGTATTTTCGAGTCCGACTGAAGCGCCGCGGAGCGAAATGAAAGTTCAGGGGACCTCGGCGGCGGCGAGCGGCGGAGAGAGTGGGAATGAGATTCGGTTGGAAAATCATGAGCATCATAAATCGAGAGATAAGTCTATCGCCGGCGGAGGCGTGATATTGGGTGGACTCGCTACCACTTTTCTGGTGGCGATTATATGCTACATTAGAGCTACGAGGCGACAGAACTCAGAAGTGAACTCTGCTTTCGAGACGACATGTCGTCCGCCTTGTTAGTTGGTTTGGTCGTGCAATTGTAATTGTAATTTTTATTTAAAGGAGGCTGTAATTGTAATTAATCACAAGTATAAAAGTGAAAGGACGAAATACAAGGTGTTGTTTGGAGCACGTGGAATCTAGCCTTAATCTTTAGTTCCGATGCAACAAAGAAAACAATATTGATGATCGAATTCTAAATTATTACAAATAATTTTTTTTCTTAATTTTTTTTTCTTGCGAAAGAATTATTATCGATTAACTTTTAATTTTAAAAAATA

mRNA sequence

CTTTCCTTTCACCCCCATTCCAATGTCGGATCCAAAAACCCTATTTATTTCCAATCGCTTAATCTCTGTAAATCTCACCTCCCAAAATATGCCTCCATTTCTGTTCCTTCTCTTCATCTTCGCCAATGCTCTTCTCCATTCAGTCTCCGTCGGAGCCGCTCCACCACCGCCCTCCGCCGAAGCGCCTTCCGGAAGAAAGCTCGGGAAGCACCAGAGTACGGCGGTTGTATTTTCGAGTCCGACTGAAGCGCCGCGGAGCGAAATGAAAGTTCAGGGGACCTCGGCGGCGGCGAGCGGCGGAGAGAGTGGGAATGAGATTCGGTTGGAAAATCATGAGCATCATAAATCGAGAGATAAGTCTATCGCCGGCGGAGGCGTGATATTGGGTGGACTCGCTACCACTTTTCTGGTGGCGATTATATGCTACATTAGAGCTACGAGGCGACAGAACTCAGAAGTGAACTCTGCTTTCGAGACGACATGTCGTCCGCCTTGTTAGTTGGTTTGGTCGTGCAATTGTAATTGTAATTTTTATTTAAAGGAGGCTGTAATTGTAATTAATCACAAGTATAAAAGTGAAAGGACGAAATACAAGGTGTTGTTTGGAGCACGTGGAATCTAGCCTTAATCTTTAGTTCCGATGCAACAAAGAAAACAATATTGATGATCGAATTCTAAATTATTACAAATAATTTTTTTTCTTAATTTTTTTTTCTTGCGAAAGAATTATTATCGATTAACTTTTAATTTTAAAAAATA

Coding sequence (CDS)

ATGTCGGATCCAAAAACCCTATTTATTTCCAATCGCTTAATCTCTGTAAATCTCACCTCCCAAAATATGCCTCCATTTCTGTTCCTTCTCTTCATCTTCGCCAATGCTCTTCTCCATTCAGTCTCCGTCGGAGCCGCTCCACCACCGCCCTCCGCCGAAGCGCCTTCCGGAAGAAAGCTCGGGAAGCACCAGAGTACGGCGGTTGTATTTTCGAGTCCGACTGAAGCGCCGCGGAGCGAAATGAAAGTTCAGGGGACCTCGGCGGCGGCGAGCGGCGGAGAGAGTGGGAATGAGATTCGGTTGGAAAATCATGAGCATCATAAATCGAGAGATAAGTCTATCGCCGGCGGAGGCGTGATATTGGGTGGACTCGCTACCACTTTTCTGGTGGCGATTATATGCTACATTAGAGCTACGAGGCGACAGAACTCAGAAGTGAACTCTGCTTTCGAGACGACATGTCGTCCGCCTTGTTAG

Protein sequence

MSDPKTLFISNRLISVNLTSQNMPPFLFLLFIFANALLHSVSVGAAPPPPSAEAPSGRKLGKHQSTAVVFSSPTEAPRSEMKVQGTSAAASGGESGNEIRLENHEHHKSRDKSIAGGGVILGGLATTFLVAIICYIRATRRQNSEVNSAFETTCRPPC
BLAST of Bhi03G001615 vs. TrEMBL
Match: tr|A0A0A0KXQ0|A0A0A0KXQ0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G303070 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 6.0e-42
Identity = 96/126 (76.19%), Postives = 103/126 (81.75%), Query Frame = 0

Query: 23  MPPFLFLLFIFANALLHSVSVGAAPPPPSAEAPSGRKLGKHQSTAVVFSSPTEAPRSEMK 82
           +PPFLFLLFIFANAL  S           AE+PS RKLGKHQSTA+ FSSPTEAPRS MK
Sbjct: 2   LPPFLFLLFIFANALFSSXXXXXXXXXXXAESPSVRKLGKHQSTAIAFSSPTEAPRSVMK 61

Query: 83  VQGTSAAASGGESGNEIRLENHEHHKSRDKSIAGGGVILGGLATTFLVAIICYIRATRRQ 142
           VQGTS  ASGGESGN + L NH+HHKSRDKSIAGGGVILGGLATTFLVA+ICYIRATRRQ
Sbjct: 62  VQGTS-GASGGESGNAVELGNHDHHKSRDKSIAGGGVILGGLATTFLVAVICYIRATRRQ 121

Query: 143 NSEVNS 149
            SE+ S
Sbjct: 122 KSELGS 126

BLAST of Bhi03G001615 vs. TrEMBL
Match: tr|A0A1S3BJV8|A0A1S3BJV8_CUCME (uncharacterized protein LOC103490675 OS=Cucumis melo OX=3656 GN=LOC103490675 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.1e-40
Identity = 95/126 (75.40%), Postives = 102/126 (80.95%), Query Frame = 0

Query: 23  MPPFLFLLFIFANALLHSVSVGAAPPPPSAEAPSGRKLGKHQSTAVVFSSPTEAPRSEMK 82
           +PPFLFLLFIFANA                E+PS RKLGKHQSTA+ FSSP EAPRSEMK
Sbjct: 4   VPPFLFLLFIFANAXXXXXXXXXXXXXXXXESPSLRKLGKHQSTAIAFSSPIEAPRSEMK 63

Query: 83  VQGTSAAASGGESGNEIRLENHEHHKSRDKSIAGGGVILGGLATTFLVAIICYIRATRRQ 142
           VQGTS AASGGESGN ++L NH+HHKSRDKSIAGGGVILGGLATTFLVAIICYIRATRRQ
Sbjct: 64  VQGTS-AASGGESGNAVQLGNHDHHKSRDKSIAGGGVILGGLATTFLVAIICYIRATRRQ 123

Query: 143 NSEVNS 149
            SE+ S
Sbjct: 124 KSELGS 128

BLAST of Bhi03G001615 vs. TrEMBL
Match: tr|A0A061ERA0|A0A061ERA0_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_021829 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.5e-16
Identity = 60/125 (48.00%), Postives = 74/125 (59.20%), Query Frame = 0

Query: 49  PPSAEAPSGRKLGKHQSTAV------VFSSPTEAPRSEMKVQGTSAAASGGESGNEIRLE 108
           P +AEAP+ RKLGKHQ   V        SSP++AP+ E  +     + S G++   +   
Sbjct: 48  PTTAEAPTVRKLGKHQPKVVKTFGSAPASSPSQAPQPEKDMHRIGESPSTGQTAATVERN 107

Query: 109 NHE-------------HHKSRDKSIAGGGVILGGLATTFLVAIICYIRATRRQNSEVN-S 154
           N E             HH+S DKS+AGGGVILGGLATTFLVA+ICYIRAT R  SE + S
Sbjct: 108 NGENVSVEGQTIHLQKHHRSVDKSVAGGGVILGGLATTFLVAVICYIRATGRHKSETHQS 167

BLAST of Bhi03G001615 vs. TrEMBL
Match: tr|A0A2P5SM18|A0A2P5SM18_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD02891 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.1e-15
Identity = 62/133 (46.62%), Postives = 82/133 (61.65%), Query Frame = 0

Query: 26  FLFLLFIFANALLHSVSV--GAAPPPPSAEAPSGRKLGKHQSTAVVFSSPTEAPRSEMKV 85
           FL  L +F NA +   +   G     P A  P+ R+LGKH+ +    SSP++AP     V
Sbjct: 5   FLLCLVLFFNASMAVATTENGETKLHPPASTPAIRRLGKHEPSV---SSPSQAPPHSGGV 64

Query: 86  Q-GTSAAASGGES--GNE----IRLENHEHHKSRDKSIAGGGVILGGLATTFLVAIICYI 145
              T+  A+ GE+  G E    + L+ H+HH S DKSIAGGGVILGGLATTFLVA+ CY+
Sbjct: 65  SPSTTIEANNGENMGGFEGQAAVHLQKHQHH-SMDKSIAGGGVILGGLATTFLVAVFCYV 124

Query: 146 RATRRQNSEVNSA 150
           RATRR  SE++ +
Sbjct: 125 RATRRHKSEIHQS 133

BLAST of Bhi03G001615 vs. TrEMBL
Match: tr|A0A2P6R9I6|A0A2P6R9I6_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr3g0464671 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 8.1e-15
Identity = 60/130 (46.15%), Postives = 80/130 (61.54%), Query Frame = 0

Query: 23  MPPFLFLLFIFANALLHSVSVGAAPPPPSAEAPSGRKLGKHQSTAVVFSSPTEAPRSEMK 82
           M  FL L FI A+A + S+++ +AP P SA+AP  RK+GKHQ      ++P  +P +E  
Sbjct: 1   MAQFLLLCFILASACV-SLTMASAPSPYSAQAPMIRKMGKHQ------NAPALSPINEQS 60

Query: 83  VQGTSAAASGGESG---NEIRLENHEHHKSRDKSIAGGGVILGGLATTFLVAIICYIRAT 142
            +   A  SG        +I L+ H H    D+S+AGGGVILGGLATTFLVA+ CYIRAT
Sbjct: 61  PKEAEAPESGDSVSILEQQIHLKKHHH---VDRSVAGGGVILGGLATTFLVAVFCYIRAT 120

Query: 143 -RRQNSEVNS 149
            R +  E+ S
Sbjct: 121 ARHKKPEIGS 120

BLAST of Bhi03G001615 vs. NCBI nr
Match: XP_011653657.1 (PREDICTED: uncharacterized protein LOC105435242 [Cucumis sativus] >KGN54308.1 hypothetical protein Csa_4G303070 [Cucumis sativus])

HSP 1 Score: 179.5 bits (454), Expect = 9.0e-42
Identity = 96/126 (76.19%), Postives = 103/126 (81.75%), Query Frame = 0

Query: 23  MPPFLFLLFIFANALLHSVSVGAAPPPPSAEAPSGRKLGKHQSTAVVFSSPTEAPRSEMK 82
           +PPFLFLLFIFANAL  S           AE+PS RKLGKHQSTA+ FSSPTEAPRS MK
Sbjct: 2   LPPFLFLLFIFANALFSSXXXXXXXXXXXAESPSVRKLGKHQSTAIAFSSPTEAPRSVMK 61

Query: 83  VQGTSAAASGGESGNEIRLENHEHHKSRDKSIAGGGVILGGLATTFLVAIICYIRATRRQ 142
           VQGTS  ASGGESGN + L NH+HHKSRDKSIAGGGVILGGLATTFLVA+ICYIRATRRQ
Sbjct: 62  VQGTS-GASGGESGNAVELGNHDHHKSRDKSIAGGGVILGGLATTFLVAVICYIRATRRQ 121

Query: 143 NSEVNS 149
            SE+ S
Sbjct: 122 KSELGS 126

BLAST of Bhi03G001615 vs. NCBI nr
Match: XP_008448528.1 (PREDICTED: uncharacterized protein LOC103490675 [Cucumis melo])

HSP 1 Score: 175.3 bits (443), Expect = 1.7e-40
Identity = 95/126 (75.40%), Postives = 102/126 (80.95%), Query Frame = 0

Query: 23  MPPFLFLLFIFANALLHSVSVGAAPPPPSAEAPSGRKLGKHQSTAVVFSSPTEAPRSEMK 82
           +PPFLFLLFIFANA                E+PS RKLGKHQSTA+ FSSP EAPRSEMK
Sbjct: 4   VPPFLFLLFIFANAXXXXXXXXXXXXXXXXESPSLRKLGKHQSTAIAFSSPIEAPRSEMK 63

Query: 83  VQGTSAAASGGESGNEIRLENHEHHKSRDKSIAGGGVILGGLATTFLVAIICYIRATRRQ 142
           VQGTS AASGGESGN ++L NH+HHKSRDKSIAGGGVILGGLATTFLVAIICYIRATRRQ
Sbjct: 64  VQGTS-AASGGESGNAVQLGNHDHHKSRDKSIAGGGVILGGLATTFLVAIICYIRATRRQ 123

Query: 143 NSEVNS 149
            SE+ S
Sbjct: 124 KSELGS 128

BLAST of Bhi03G001615 vs. NCBI nr
Match: EOY07376.1 (Uncharacterized protein TCM_021829 [Theobroma cacao])

HSP 1 Score: 94.4 bits (233), Expect = 3.8e-16
Identity = 60/125 (48.00%), Postives = 74/125 (59.20%), Query Frame = 0

Query: 49  PPSAEAPSGRKLGKHQSTAV------VFSSPTEAPRSEMKVQGTSAAASGGESGNEIRLE 108
           P +AEAP+ RKLGKHQ   V        SSP++AP+ E  +     + S G++   +   
Sbjct: 48  PTTAEAPTVRKLGKHQPKVVKTFGSAPASSPSQAPQPEKDMHRIGESPSTGQTAATVERN 107

Query: 109 NHE-------------HHKSRDKSIAGGGVILGGLATTFLVAIICYIRATRRQNSEVN-S 154
           N E             HH+S DKS+AGGGVILGGLATTFLVA+ICYIRAT R  SE + S
Sbjct: 108 NGENVSVEGQTIHLQKHHRSVDKSVAGGGVILGGLATTFLVAVICYIRATGRHKSETHQS 167

BLAST of Bhi03G001615 vs. NCBI nr
Match: XP_007026874.2 (PREDICTED: uncharacterized protein LOC18597662 [Theobroma cacao])

HSP 1 Score: 93.6 bits (231), Expect = 6.5e-16
Identity = 59/125 (47.20%), Postives = 74/125 (59.20%), Query Frame = 0

Query: 49  PPSAEAPSGRKLGKHQSTAV------VFSSPTEAPRSEMKVQGTSAAASGGESGNEIRLE 108
           P +AEAP+ RKLGKHQ   V        SSP++AP+ E  +     + S G++   +   
Sbjct: 48  PTTAEAPTVRKLGKHQPKVVKTFGSAPASSPSQAPQPEKDMHRIGESPSTGQTAATVERN 107

Query: 109 N-------------HEHHKSRDKSIAGGGVILGGLATTFLVAIICYIRATRRQNSEVN-S 154
           N              +HH+S DKS+AGGGVILGGLATTFLVA+ICYIRAT R  SE + S
Sbjct: 108 NGTNVSVKGQTIHLQKHHRSVDKSVAGGGVILGGLATTFLVAVICYIRATGRHKSETHQS 167

BLAST of Bhi03G001615 vs. NCBI nr
Match: PPE00101.1 (hypothetical protein GOBAR_DD02891 [Gossypium barbadense])

HSP 1 Score: 91.3 bits (225), Expect = 3.2e-15
Identity = 62/133 (46.62%), Postives = 82/133 (61.65%), Query Frame = 0

Query: 26  FLFLLFIFANALLHSVSV--GAAPPPPSAEAPSGRKLGKHQSTAVVFSSPTEAPRSEMKV 85
           FL  L +F NA +   +   G     P A  P+ R+LGKH+ +    SSP++AP     V
Sbjct: 5   FLLCLVLFFNASMAVATTENGETKLHPPASTPAIRRLGKHEPSV---SSPSQAPPHSGGV 64

Query: 86  Q-GTSAAASGGES--GNE----IRLENHEHHKSRDKSIAGGGVILGGLATTFLVAIICYI 145
              T+  A+ GE+  G E    + L+ H+HH S DKSIAGGGVILGGLATTFLVA+ CY+
Sbjct: 65  SPSTTIEANNGENMGGFEGQAAVHLQKHQHH-SMDKSIAGGGVILGGLATTFLVAVFCYV 124

Query: 146 RATRRQNSEVNSA 150
           RATRR  SE++ +
Sbjct: 125 RATRRHKSEIHQS 133

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0KXQ0|A0A0A0KXQ0_CUCSA6.0e-4276.19Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G303070 PE=4 SV=1[more]
tr|A0A1S3BJV8|A0A1S3BJV8_CUCME1.1e-4075.40uncharacterized protein LOC103490675 OS=Cucumis melo OX=3656 GN=LOC103490675 PE=... [more]
tr|A0A061ERA0|A0A061ERA0_THECC2.5e-1648.00Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_021829 PE=4 SV=1[more]
tr|A0A2P5SM18|A0A2P5SM18_GOSBA2.1e-1546.62Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD02891 PE=4 SV... [more]
tr|A0A2P6R9I6|A0A2P6R9I6_ROSCH8.1e-1546.15Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr3g0464671 PE=4... [more]
Match NameE-valueIdentityDescription
XP_011653657.19.0e-4276.19PREDICTED: uncharacterized protein LOC105435242 [Cucumis sativus] >KGN54308.1 hy... [more]
XP_008448528.11.7e-4075.40PREDICTED: uncharacterized protein LOC103490675 [Cucumis melo][more]
EOY07376.13.8e-1648.00Uncharacterized protein TCM_021829 [Theobroma cacao][more]
XP_007026874.26.5e-1647.20PREDICTED: uncharacterized protein LOC18597662 [Theobroma cacao][more]
PPE00101.13.2e-1546.62hypothetical protein GOBAR_DD02891 [Gossypium barbadense][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
cellular_component GO:0016020 membrane
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi03M001615Bhi03M001615mRNA


Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 65..93
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..96
NoneNo IPR availablePANTHERPTHR34558FAMILY NOT NAMEDcoord: 23..145

The following gene(s) are paralogous to this gene:

None