CsaV3_4G025580 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G025580
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionActin cytoskeleton-regulatory complex protein
Locationchr4 : 15055173 .. 15055919 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCCTGCTTCCCTTCTCCCACGAACTTTCCTTAATCCTTCTCCTAGCTTCCTTGGATCCACAAACCCCTATTTATTTCCACTCCCTAATTAAACTCCTCAAATCTCACCTCCACGAATATGCTTCCTCCATTTCTATTCCTTCTCTTCATCTTCGCCAATGCTCTTTTCAGTTCACTCGCCGCCGCTGCCGCTCCACCACCTACCTCCGCCGAATCGCCTTCTGTAAGAAAGCTTGGGAAGCACCAGAGTACGGCGATTGCCTTTTCGAGTCCGACTGAAGCGCCGCGAAGCGTAATGAAAGTCCAGGGGACCTCGGGGGCGAGCGGTGGAGAGAGTGGGAATGCGGTTGAATTGGGGAATCATGACCATCACAAGTCGAGAGATAAGTCTATCGCCGGCGGAGGTGTGATTTTGGGCGGACTCGCTACGACTTTTTTGGTGGCGGTTATATGTTACATAAGAGCTACGAGACGACAGAAAAGTGAACTTGGCTCTTGAGACGACATGTCGTCCGCCTTGGTTTGTTTGTTGTGTAATTGTATTTTTTTTAAAAGGAGGATGTAATTGTAATTAACCATAAGTATAAAAATCAAAGGCCACAATACATTTTGTTTTGTCTTTTTTGGGTTTTTAGAAAATAATAATAACAATCAAACTGTTCAAACCTCATAAATATTTTGTAATATTTCAATTTTTGACAAATTTCCTTTTTTTATACAAATAATATTCTTGTTATTATTTGTTTTA

mRNA sequence

ATGCTTCCTCCATTTCTATTCCTTCTCTTCATCTTCGCCAATGCTCTTTTCAGTTCACTCGCCGCCGCTGCCGCTCCACCACCTACCTCCGCCGAATCGCCTTCTGTAAGAAAGCTTGGGAAGCACCAGAGTACGGCGATTGCCTTTTCGAGTCCGACTGAAGCGCCGCGAAGCGTAATGAAAGTCCAGGGGACCTCGGGGGCGAGCGGTGGAGAGAGTGGGAATGCGGTTGAATTGGGGAATCATGACCATCACAAGTCGAGAGATAAGTCTATCGCCGGCGGAGGTGTGATTTTGGGCGGACTCGCTACGACTTTTTTGGTGGCGGTTATATGTTACATAAGAGCTACGAGACGACAGAAAAGTGAACTTGGCTCTTGA

Coding sequence (CDS)

ATGCTTCCTCCATTTCTATTCCTTCTCTTCATCTTCGCCAATGCTCTTTTCAGTTCACTCGCCGCCGCTGCCGCTCCACCACCTACCTCCGCCGAATCGCCTTCTGTAAGAAAGCTTGGGAAGCACCAGAGTACGGCGATTGCCTTTTCGAGTCCGACTGAAGCGCCGCGAAGCGTAATGAAAGTCCAGGGGACCTCGGGGGCGAGCGGTGGAGAGAGTGGGAATGCGGTTGAATTGGGGAATCATGACCATCACAAGTCGAGAGATAAGTCTATCGCCGGCGGAGGTGTGATTTTGGGCGGACTCGCTACGACTTTTTTGGTGGCGGTTATATGTTACATAAGAGCTACGAGACGACAGAAAAGTGAACTTGGCTCTTGA

Protein sequence

MLPPFLFLLFIFANALFSSLAAAAAPPPTSAESPSVRKLGKHQSTAIAFSSPTEAPRSVMKVQGTSGASGGESGNAVELGNHDHHKSRDKSIAGGGVILGGLATTFLVAVICYIRATRRQKSELGS
Homology
[Close]
BLAST of CsaV3_4G025580 vs. NCBI nr
Match: XP_011653657.1 (PREDICTED: uncharacterized protein LOC105435242 [Cucumis sativus] >KGN54308.1 hypothetical protein Csa_4G303070 [Cucumis sativus])

HSP 1 Score: 215.7 bits (548), Expect = 9.1e-53
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0 

Query: 1   MLPPFLFLLFIFANALFSSXXXXXXXXXXXAESPSVRKLGKHQSTAIAFSSPTEAPRSVM 60
           MLPPFLFLLFIFANALFSSXXXXXXXXXXXAESPSVRKLGKHQSTAIAFSSPTEAPRSVM
Sbjct: 1   MLPPFLFLLFIFANALFSSXXXXXXXXXXXAESPSVRKLGKHQSTAIAFSSPTEAPRSVM 60

Query: 61  KVQGTSGASGGESGNAVELGNHDHHKSRDKSIAGGGVILGGLATTFLVAVICYIRATRRQ 120
           KVQGTSGASGGESGNAVELGNHDHHKSRDKSIAGGGVILGGLATTFLVAVICYIRATRRQ
Sbjct: 61  KVQGTSGASGGESGNAVELGNHDHHKSRDKSIAGGGVILGGLATTFLVAVICYIRATRRQ 120

Query: 121 KSELGS 127
           KSELGS
Sbjct: 121 KSELGS 126

[Close]
BLAST of CsaV3_4G025580 vs. NCBI nr
Match: XP_008448528.1 (PREDICTED: uncharacterized protein LOC103490675 [Cucumis melo])

HSP 1 Score: 194.5 bits (493), Expect = 2.2e-46
Identity = 114/126 (90.48%), Postives = 118/126 (93.65%), Query Frame = 0 

Query: 1   MLPPFLFLLFIFANALFSSXXXXXXXXXXXAESPSVRKLGKHQSTAIAFSSPTEAPRSVM 60
           M+PPFLFLLFIFANA    XXXXXXXXXXX ESPS+RKLGKHQSTAIAFSSP EAPRS M
Sbjct: 3   MVPPFLFLLFIFANAXXXXXXXXXXXXXXXXESPSLRKLGKHQSTAIAFSSPIEAPRSEM 62

Query: 61  KVQGTSGASGGESGNAVELGNHDHHKSRDKSIAGGGVILGGLATTFLVAVICYIRATRRQ 120
           KVQGTS ASGGESGNAV+LGNHDHHKSRDKSIAGGGVILGGLATTFLVA+ICYIRATRRQ
Sbjct: 63  KVQGTSAASGGESGNAVQLGNHDHHKSRDKSIAGGGVILGGLATTFLVAIICYIRATRRQ 122

Query: 121 KSELGS 127
           KSELGS
Sbjct: 123 KSELGS 128

[Close]
BLAST of CsaV3_4G025580 vs. NCBI nr
Match: KJB16940.1 (hypothetical protein B456_002G255600 [Gossypium raimondii])

HSP 1 Score: 89.7 bits (221), Expect = 7.5e-15
Identity = 53/102 (51.96%), Postives = 64/102 (62.75%), Query Frame = 0 

Query: 31  AESPSVRKLGKHQSTAIAFSSPTEA--------PRSVMKVQGTSGASGGESGNAVELGNH 90
           A +P++R+LGKH+      SSP +A        P + ++        G E   AV L  H
Sbjct: 33  ASTPTIRRLGKHEPPV---SSPLQAPPHSGGVSPSTTIEANNGENMGGFEGQAAVHLQKH 92

Query: 91  DHHKSRDKSIAGGGVILGGLATTFLVAVICYIRATRRQKSEL 125
            HH S DKSIAGGGVILGGLATTFLVAV CY+RATRR KSE+
Sbjct: 93  QHH-SMDKSIAGGGVILGGLATTFLVAVFCYVRATRRHKSEI 130

[Close]
BLAST of CsaV3_4G025580 vs. NCBI nr
Match: PPE00101.1 (hypothetical protein GOBAR_DD02891 [Gossypium barbadense])

HSP 1 Score: 89.7 bits (221), Expect = 7.5e-15
Identity = 59/130 (45.38%), Postives = 75/130 (57.69%), Query Frame = 0 

Query: 5   FLFLLFIFANA--LFSSXXXXXXXXXXXAESPSVRKLGKHQSTAIAFSSPTEA------- 64
           FL  L +F NA    ++           A +P++R+LGKH+ +    SSP++A       
Sbjct: 5   FLLCLVLFFNASMAVATTENGETKLHPPASTPAIRRLGKHEPSV---SSPSQAPPHSGGV 64

Query: 65  -PRSVMKVQGTSGASGGESGNAVELGNHDHHKSRDKSIAGGGVILGGLATTFLVAVICYI 124
            P + ++        G E   AV L  H HH S DKSIAGGGVILGGLATTFLVAV CY+
Sbjct: 65  SPSTTIEANNGENMGGFEGQAAVHLQKHQHH-SMDKSIAGGGVILGGLATTFLVAVFCYV 124

[Close]
BLAST of CsaV3_4G025580 vs. NCBI nr
Match: XP_016752941.1 (PREDICTED: uncharacterized protein LOC107961276 [Gossypium hirsutum])

HSP 1 Score: 89.4 bits (220), Expect = 9.8e-15
Identity = 53/102 (51.96%), Postives = 64/102 (62.75%), Query Frame = 0 

Query: 31  AESPSVRKLGKHQSTAIAFSSPTEA--------PRSVMKVQGTSGASGGESGNAVELGNH 90
           A +P++R LGKH+      SSP++A        P + ++        G E   AV L  H
Sbjct: 33  ASTPTIRTLGKHEPPV---SSPSQALPHSGGVSPSTTIEANNGENMGGFEGKAAVHLQKH 92

Query: 91  DHHKSRDKSIAGGGVILGGLATTFLVAVICYIRATRRQKSEL 125
            HH S DKSIAGGGVILGGLATTFLVAV CY+RATRR KSE+
Sbjct: 93  QHH-SMDKSIAGGGVILGGLATTFLVAVFCYVRATRRHKSEI 130

[Close]
BLAST of CsaV3_4G025580 vs. TrEMBL
Match: tr|A0A0A0KXQ0|A0A0A0KXQ0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G303070 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 6.0e-53
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0 

Query: 1   MLPPFLFLLFIFANALFSSXXXXXXXXXXXAESPSVRKLGKHQSTAIAFSSPTEAPRSVM 60
           MLPPFLFLLFIFANALFSSXXXXXXXXXXXAESPSVRKLGKHQSTAIAFSSPTEAPRSVM
Sbjct: 1   MLPPFLFLLFIFANALFSSXXXXXXXXXXXAESPSVRKLGKHQSTAIAFSSPTEAPRSVM 60

Query: 61  KVQGTSGASGGESGNAVELGNHDHHKSRDKSIAGGGVILGGLATTFLVAVICYIRATRRQ 120
           KVQGTSGASGGESGNAVELGNHDHHKSRDKSIAGGGVILGGLATTFLVAVICYIRATRRQ
Sbjct: 61  KVQGTSGASGGESGNAVELGNHDHHKSRDKSIAGGGVILGGLATTFLVAVICYIRATRRQ 120

Query: 121 KSELGS 127
           KSELGS
Sbjct: 121 KSELGS 126

[Close]
BLAST of CsaV3_4G025580 vs. TrEMBL
Match: tr|A0A1S3BJV8|A0A1S3BJV8_CUCME (uncharacterized protein LOC103490675 OS=Cucumis melo OX=3656 GN=LOC103490675 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 1.4e-46
Identity = 114/126 (90.48%), Postives = 118/126 (93.65%), Query Frame = 0 

Query: 1   MLPPFLFLLFIFANALFSSXXXXXXXXXXXAESPSVRKLGKHQSTAIAFSSPTEAPRSVM 60
           M+PPFLFLLFIFANA    XXXXXXXXXXX ESPS+RKLGKHQSTAIAFSSP EAPRS M
Sbjct: 3   MVPPFLFLLFIFANAXXXXXXXXXXXXXXXXESPSLRKLGKHQSTAIAFSSPIEAPRSEM 62

Query: 61  KVQGTSGASGGESGNAVELGNHDHHKSRDKSIAGGGVILGGLATTFLVAVICYIRATRRQ 120
           KVQGTS ASGGESGNAV+LGNHDHHKSRDKSIAGGGVILGGLATTFLVA+ICYIRATRRQ
Sbjct: 63  KVQGTSAASGGESGNAVQLGNHDHHKSRDKSIAGGGVILGGLATTFLVAIICYIRATRRQ 122

Query: 121 KSELGS 127
           KSELGS
Sbjct: 123 KSELGS 128

[Close]
BLAST of CsaV3_4G025580 vs. TrEMBL
Match: tr|A0A0D2RCN9|A0A0D2RCN9_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_002G255600 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 5.0e-15
Identity = 53/102 (51.96%), Postives = 64/102 (62.75%), Query Frame = 0 

Query: 31  AESPSVRKLGKHQSTAIAFSSPTEA--------PRSVMKVQGTSGASGGESGNAVELGNH 90
           A +P++R+LGKH+      SSP +A        P + ++        G E   AV L  H
Sbjct: 33  ASTPTIRRLGKHEPPV---SSPLQAPPHSGGVSPSTTIEANNGENMGGFEGQAAVHLQKH 92

Query: 91  DHHKSRDKSIAGGGVILGGLATTFLVAVICYIRATRRQKSEL 125
            HH S DKSIAGGGVILGGLATTFLVAV CY+RATRR KSE+
Sbjct: 93  QHH-SMDKSIAGGGVILGGLATTFLVAVFCYVRATRRHKSEI 130

[Close]
BLAST of CsaV3_4G025580 vs. TrEMBL
Match: tr|A0A2P5SM18|A0A2P5SM18_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD02891 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 5.0e-15
Identity = 59/130 (45.38%), Postives = 75/130 (57.69%), Query Frame = 0 

Query: 5   FLFLLFIFANA--LFSSXXXXXXXXXXXAESPSVRKLGKHQSTAIAFSSPTEA------- 64
           FL  L +F NA    ++           A +P++R+LGKH+ +    SSP++A       
Sbjct: 5   FLLCLVLFFNASMAVATTENGETKLHPPASTPAIRRLGKHEPSV---SSPSQAPPHSGGV 64

Query: 65  -PRSVMKVQGTSGASGGESGNAVELGNHDHHKSRDKSIAGGGVILGGLATTFLVAVICYI 124
            P + ++        G E   AV L  H HH S DKSIAGGGVILGGLATTFLVAV CY+
Sbjct: 65  SPSTTIEANNGENMGGFEGQAAVHLQKHQHH-SMDKSIAGGGVILGGLATTFLVAVFCYV 124

[Close]
BLAST of CsaV3_4G025580 vs. TrEMBL
Match: tr|A0A1U8PP34|A0A1U8PP34_GOSHI (uncharacterized protein LOC107961276 OS=Gossypium hirsutum OX=3635 GN=LOC107961276 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 6.5e-15
Identity = 53/102 (51.96%), Postives = 64/102 (62.75%), Query Frame = 0 

Query: 31  AESPSVRKLGKHQSTAIAFSSPTEA--------PRSVMKVQGTSGASGGESGNAVELGNH 90
           A +P++R LGKH+      SSP++A        P + ++        G E   AV L  H
Sbjct: 33  ASTPTIRTLGKHEPPV---SSPSQALPHSGGVSPSTTIEANNGENMGGFEGKAAVHLQKH 92

Query: 91  DHHKSRDKSIAGGGVILGGLATTFLVAVICYIRATRRQKSEL 125
            HH S DKSIAGGGVILGGLATTFLVAV CY+RATRR KSE+
Sbjct: 93  QHH-SMDKSIAGGGVILGGLATTFLVAVFCYVRATRRHKSEI 130

The following BLAST results are available for this feature:
BLAST of CsaV3_4G025580 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011653657.19.1e-53100.00PREDICTED: uncharacterized protein LOC105435242 [Cucumis sativus] >KGN54308.1 hy... [more]
XP_008448528.12.2e-4690.48PREDICTED: uncharacterized protein LOC103490675 [Cucumis melo][more]
KJB16940.17.5e-1551.96hypothetical protein B456_002G255600 [Gossypium raimondii][more]
PPE00101.17.5e-1545.38hypothetical protein GOBAR_DD02891 [Gossypium barbadense][more]
XP_016752941.19.8e-1551.96PREDICTED: uncharacterized protein LOC107961276 [Gossypium hirsutum][more]
BLAST of CsaV3_4G025580 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G025580 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G025580 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KXQ0|A0A0A0KXQ0_CUCSA6.0e-53100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G303070 PE=4 SV=1[more]
tr|A0A1S3BJV8|A0A1S3BJV8_CUCME1.4e-4690.48uncharacterized protein LOC103490675 OS=Cucumis melo OX=3656 GN=LOC103490675 PE=... [more]
tr|A0A0D2RCN9|A0A0D2RCN9_GOSRA5.0e-1551.96Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_002G255600 PE=4 ... [more]
tr|A0A2P5SM18|A0A2P5SM18_GOSBA5.0e-1545.38Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD02891 PE=4 SV... [more]
tr|A0A1U8PP34|A0A1U8PP34_GOSHI6.5e-1551.96uncharacterized protein LOC107961276 OS=Gossypium hirsutum OX=3635 GN=LOC1079612... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G025580.1CsaV3_4G025580.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 26..90
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 36..72
NoneNo IPR availablePANTHERPTHR34558FAMILY NOT NAMEDcoord: 4..123

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_4G025580CSPI04G15230Wild cucumber (PI 183967)cpicucB212
CsaV3_4G025580Cucsa.066640Cucumber (Gy14) v1cgycucB057
CsaV3_4G025580CmaCh03G003940Cucurbita maxima (Rimu)cmacucB0797
CsaV3_4G025580CmoCh03G004080Cucurbita moschata (Rifu)cmocucB0781
CsaV3_4G025580Cp4.1LG19g03240Cucurbita pepo (Zucchini)cpecucB0600
CsaV3_4G025580Cp4.1LG10g08230Cucurbita pepo (Zucchini)cpecucB0075
CsaV3_4G025580Carg19959Silver-seed gourdcarcucB0592
CsaV3_4G025580Carg13241Silver-seed gourdcarcucB0614
CsaV3_4G025580Cla018167Watermelon (97103) v1cucwmB355
CsaV3_4G025580MELO3C003184Melon (DHL92) v3.5.1cucmeB327
CsaV3_4G025580ClCG04G007660Watermelon (Charleston Gray)cucwcgB318
CsaV3_4G025580Lsi01G014810Bottle gourd (USVL1VR-Ls)cuclsiB272
CsaV3_4G025580MELO3C003184.2Melon (DHL92) v3.6.1cucmedB320
CsaV3_4G025580Cla97C04G074350Watermelon (97103) v2cucwmbB307
CsaV3_4G025580Bhi03G001615Wax gourdcucwgoB397
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G025580Cucumber (Chinese Long) v3cuccucB116
CsaV3_4G025580Cucumber (Chinese Long) v3cuccucB172
CsaV3_4G025580Silver-seed gourdcarcucB0183
CsaV3_4G025580Silver-seed gourdcarcucB1042
CsaV3_4G025580Cucumber (Gy14) v2cgybcucB128
CsaV3_4G025580Cucumber (Gy14) v2cgybcucB171
CsaV3_4G025580Cucumber (Gy14) v1cgycucB282
CsaV3_4G025580Cucurbita maxima (Rimu)cmacucB0301
CsaV3_4G025580Cucurbita maxima (Rimu)cmacucB0988
CsaV3_4G025580Cucurbita maxima (Rimu)cmacucB1016
CsaV3_4G025580Cucurbita moschata (Rifu)cmocucB0294
CsaV3_4G025580Cucurbita moschata (Rifu)cmocucB0972
CsaV3_4G025580Cucurbita moschata (Rifu)cmocucB0999
CsaV3_4G025580Cucurbita pepo (Zucchini)cpecucB0611
CsaV3_4G025580Cucurbita pepo (Zucchini)cpecucB0771
CsaV3_4G025580Cucurbita pepo (Zucchini)cpecucB1066
CsaV3_4G025580Wild cucumber (PI 183967)cpicucB159
CsaV3_4G025580Bottle gourd (USVL1VR-Ls)cuclsiB298
CsaV3_4G025580Melon (DHL92) v3.5.1cucmeB292
CsaV3_4G025580Melon (DHL92) v3.6.1cucmedB284
CsaV3_4G025580Watermelon (Charleston Gray)cucwcgB281
CsaV3_4G025580Watermelon (97103) v1cucwmB301
CsaV3_4G025580Watermelon (97103) v2cucwmbB275
CsaV3_4G025580Wax gourdcucwgoB365