Lsi11G000550 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi11G000550
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionSuccinate dehydrogenase assembly factor 2, mitochondrial
Locationchr11 : 629458 .. 635405 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAGAAAAATTAGAAAAATCCTAGCCAGTCATCCTTTTTCTCTCTCCCTCTCTTCCCATCGGGAGTTAGCCACACGTACCCTCTTTGTTCGCGCTTTCTTCAGCTGCCGCGTCGCCCCTCTTCCTCGATCTCCTCTCCGTTCGACGCTTCCATCTCCGGCGACGCGTGGACAGCGATCACATCGGCGAAGCTTTCCTTGATCTCCTTGTCGGCGACTTGGAGTAGCACGACGACATCTCATACCACCGACTAGAGCAGCGTTTTCCTCCCTTTTGACAAGGTTCGCCACTTACCCATTCTATTTCGACCTAAGATTAGAGCTACTCACTTATTAACGGCCTCTATTATGCAAGAGTAAGCGGATTTGGCCATGTTCCAGCAAGGATTCGAGTCCGCTTGAGTAAGTTTCAGTGGACAAATGTGCTATAAACTCCTTTGAACACTTTTAAGTGTTTTGGCTTAGCCTCTAACTTTGAAAACATCTCTCTTTGTAGCTTCCGATTGATATCGAACCTATTCGGATACTTTCCCAGCAACGTTTCCCCTACCCACTTTGCGACTTTAGTATTGCTTTACCCATCACCTAACGACTGCTAATAATAGGATTTTTAATATTTTTTTTACACGAATCAGCAAGCGTTGAAACTGTTCGGTGGCGTTCAGTTGATTTAAACTAGTTCGAACCCATTTGGAATCTCTTCAAACTCATTCCAGCAAGGTTCTAAGCCTGTTTGGTGTGGTTCTAACACCTCACTTTAGACCTTTTCGAACTCGTTTAAAGTGCTGTAAATTAGTTGCTAGCTCTTGGGACTCTGTTTGTAATTTGGAACTGTCGGAGCCTTTGAATTAAGGATTAAGGTTGTTGTTGGTTGGTTTGTTCATTATGAACACTCTTTGAAACTTCAATTAAGGTTTGGAACTGAGATTTGACGTTAGAATCTTGTTTTAATATTTCATGGGTCTTTTGAATATTTTAGGGACAGTCTTAAACAATATGTAAGTAGTTTTCTACCGGATGGGCTTGTTTGTTGTCTTGTTATGTAGTTTACTTATGCTATGTTTAAATATACCTATGACTCATGTGAATTGATCTTGAAATGGTTGTTCTGTAATGGTTAAGAACGTTTGGATGCTCATTGAGATTTCTTGTGACGTCCTATTATTTGGTTGGGCATGCTTGGATGCTTGTTGTGATGGTTATGTTTTGTATAGCATGCCAAATTGTTGGGACTTGTTTTGTGTGATAAGTATTTTGTTGTTAAGCATAACTGCGGAGCATGACGCGTAATTATGTATGGGTGTCAGAGTATGACACATAAATCATGTATGGGTTGCGGAGCATGACACGTAAATCATGTATGGGTTGTGGAACATGACGCGGGAATCATATATGGGTGGCAAAGCATAACACGTAAATCATGTATGGGCGGTAGAGTATGATGCGTAAATCATGTATAGGTGGCGAAGCATGACATGGGTTACATTAGAGGGGAGAATTGAGTTGAGTTGGTAATTTTTATCAACTCAACCTAACTGAAGTTGGTGAACCAAACGCCTCCTAAGTAGTAAAGGATAAAATGCTATTTGTCCATATTATATAAAATTTAACGGGTCCAAAAGTACTTTGATTCTGAAAAGAAGTCTTTTATCCAAACCAAAAACTTGAAGGGCTAATTTTATCAAAGGCTTTGCCTCTAAGTGGATTATCAAACTTGAGAAAAAGCGTTCAATTGGGTTGATTGGGATTTCTTATTGGATGTCTCATTTTTCAAATCATGGTAGGTCCCATGGAAGAATTCATGCTTCAAGGGGTATTAGGCAAGGGGTTCCTCTTTCTCCTTTCCTACTCCTCTTGATCAGTGAGGTTTTAAGTGCATTTGTTGGCCTCATTCATAATAAAGGGATCTTTGAAGGCTTTATAGTGGGCAAGGACAAAGTTCATGTATCTGCTTTTCAATTTGCCGATGGCACGCTGTTATTTTGTAAATATGATGGTGATATGTAGAATGTCCTCATAAAAATCATAGAGGTGTTTGAATAGTGTTCTGGCCAAAAGGTTAATGGGAGGGGGTTACGGAATCACCTTTGAGTGGAGGCCTCGGTATTGATGATTTGAAAAATAGGAATCTGGCTTTGTTAGCCAAATGGAGCTGGCAGCTTTTAGTTGAAGAAGAGTCTTTGTGGTGCAAAGTTGTAAAAAGCATTCATGGAAGTGACTATCATAATTGGCATACATCAGGCAAGATTGATTGCCTTTGAAGCCCTTGGATTAATATCTTTAGAGCTTGGCAACAAGTTAACTCTCTTGCTTTGTTTAAACTTGGAAATGGCAGTAGGATGTCTTTTTGGCGTGACCCATGGTTGGATAGTTCTAATTTGGGCTCTTTATTCCCAATTCTCCTAAGAATTACCACTAGTCCTAATGGTTCGGTACTGGAGCATTGGGATACAACTACTTTCTCTTGCTTTATCTCTTTTAGACGGTTTTTAAAGGATGAGGAAGCTTTGGATTTTCAGAATTTACTGGGTTCTTTAGTAGGCCGAAGAGTTCTTGATTGCCCGGATTCAAGAAGTTGGAAGTTGAAGTCTTTAGGTTTTTTTAGTTAAATCTATTTATAAGCATTTGTCGAAATCTACTCCAATGGATAAACTTGTTTACAATGCTCTATGGAAATCAAAATGCCCTCGTCGAGTAAACATCATTGTTTAGGTTATGATTTTTGGAGCTCTCAACTATTCTCTTACACTCCAAAGAAAACTTCCTACTAATATCCTACTAATCTTACCCATTTACCCCTAACTAGTACTCTCACAGTGTGCTCTGTTACGGGATCTTTGGGGAGGGAAATAATTGAGTTTTTAAAAGCGTGGAAAGGGGCTCTAATGATGTTTGGTCTTTAGTGAGGATTCATGTTTCTCTTTCGGCTTCAATTTCTTTGTGGCTACTCTATAGGCAATATTTTACTTAGTTGGAACCCCATTCTGTAGTGGAATCTTTTGTGGGTTTGATTTTTTGTATTCTTTCATTTTGTTTCTCAATAAAAATAGTTGTTTATATATATATATATAGAAAAAAAAATCATCGTGTTCTTGATTAGAAGTGACTTTAATCATATGAAATTGTTTGTGAGTTGTGTTTTCTTATGTTGATTTAATATATTGTTGATTGAAATGTTGTCTTGTGATATTTGATGCTTTTCAAAATATGTTCAACTATGTTATTTTTCTATGATTCTTCTCATGATTTGTGTTAGTAAATTGGAGGGCGCTATGGATGTGTCAACCTAGTTAAGATATCCTAGTGTGCCTGCTGATCCCTTCATTCCTTTTGCTCATTACATATCATTGTAGTATTAACTTAGGCACACAACAATGTTATGCTTAACCTAGGCATGTTGTGTGCCTAAGTTAATACTACACATGAGTCAAGTGGTCTTATGTGTTCGTTTATATTAATGGTATTTAAAGAGAGCAAATACCCTTTAAATAATATTCTCTTTTTGATAAACTTGTTTCAATCCAGTATTATCATTTTGAAAACGCGAATGGCGACTTTCATAAGGGCTCTAAACAAAGCTCATCAAGTTGTATACTTGAAAGCCTCCCCAACCATTTTGAGAAGCAAATTGATGCCCCTTTTGCCTAGTGCTTTTATTGGGTTGGAGAATCTACAAAGCCAACTAACAAATCACAATCAGCATCACCATGGCTGTTTCTTTAGTTTTCGTTGCTCTTCCACAAGTACAAATCCTCACATCGATCTCTCAAATGAAGATAGCAAGAGACATTTATTCAATAGGTTCGTTCATCCCTCTCGCTCTCTTTCTCTCAATTATTGGCACTTTTGTTTTGATTGACAATTTTTTTTTTTTTTTTTTTTGGTTGTTGGACTTGACAGGTTGTTGTACCGGAGCAAACAACGAGGGTTTTTGGAATTGGATTTGGTACTTGGGAAATGGGTAGAGGATCACATCAATTCTTTAGATGCAGATGGTGTTCAATCTCTAATTAATGTTCTTGACCTGGTAATTTAGTCTTCTACCCTTATTTGGAGTGATTTCTATGCTTTGTGGTGTAGCCTTAGTTGGTTTTTAACCATGGCTTGTTGTGGGGGGTGGGGGGAATAGGTCGGGTGGTGTGGAGCTATGCTCTTAGTGCCACATGGAATGTTTTATCTCTGTTCTTTATGTTCGTTGTTCTAATTTTTTCTTTGGTGTTTCGTTCGGTTCTATCTTTTACTCCCTTCAATAGTTTGTATCTTTGAGCATTGTCTATTTTTATTTATTCTATTAAATATTGTCTCTAGTCATTTATATATTAAATTAAAAAATAAAAAAAAGCCAACGCCCCGTGATGAAGGAAATGGTGGAGGAGATAGTTACAACAAGTGTGTATTACAAACTTACATCAATGGGTAGTAAAATCAAGGTTAAGGGTTTCAGTTGTGTCCCTTCCACCGAAGTAGGTGATTTCAGTTCAGTCCATAACCGGGAGGTTATTTATGCTATGGGGGGAGGGGTGATGGTTTTATGCAGGAGAAAAAGGATATTACAGTATTTTTTGGTAGAAATAGCTTGTGGGAGAATATTTGGTATTCGACCCATATTTACCCTTCACTTTAGGCTGCCCATTTTTATTTTATTTTGATATTGTTCTCTACCTTTTGTTACCAAAAGTTGGGTTTTTCTTTTTAAGTTGTAAATGAGTTTCTGGACTCTTTTTTGGATGATGCTTATTTTTTGCAAGGTTCTCTTCTTCTCTAACATTCCACAGAGATGAGTGTGATGGTAGATTGTTAAATCCATTGGTTAAGGTTATTTAGATATGTATATGCTTACAGTTACACGCAATATGCTGGTTACGCTCATCTAGAAGTAAAAAATTAAAGAATGTTTCTTTTTTTTCTTTTCTTTTTTCTTTTTTCTCTTCCTTGTTTCCCTATCGTTGCCTGTTTTTTCATTGGAACATGAGATTTTGTGGGCGATGTCCTGGCAGATTAATGGATCATTCTTGAAGTTCCTCATTATTATTGTAACTTTGAAAAGAAGTGGAGGTCTTAGAAATAGCTTTCAAGAGGGTTGATCTTGGGAAGGAGCAGTACCCATTAGGTTAGAGGAAGAACTTTTGAATAATAATGTTTTAATTTCATTTGCTTTGTTGTAATATAAAGAAATCCTACCCAAGTCCTAACTCACAACTATATCATAAAAATGAAAAATAATACACATGCAACTAAGATTCAATCATTCTTCTGGTTTCAGGAAAATCCAGATTTATGGAAATGGTTAACTGGCCAGGAGCAACCCCCTGAAGCAGTGAAAACAAATCCTGTGAGCATCCAAGCGTGACATTAGTTATTGTTTTTCTTTTCATCTTTTGACTTAAATATATGTGATTTTACAATTAGAGTATGTGTCATTGTAGGTATTTATTGGTGTGCAAGAGAAGGTCATGAACAATCTCAACAAACATGCCTCACCTGAGACACGAACACCACCTGGGCAACAATGGGTAAGGGGTTGGGATGATTTCAAGAGAGGTCGGGATGGCCCCATAACAGGAAATCAGTAACTCTTCCGTTAAACTTTATATGTAATCTCTCTTTTAAGTATATAAGAACAGAAGAATCCAAGTGAGGTTTATCATATAATTGTTCGTAATGAATGGTGTGCTGTGAATAAGTTAACCCATCAAGGACTCTAAAGGGAACATTATTCAGTGTGACTCTCCCTTTAAACCCTTGATCTATAGTGAATTAATAATTGTTTTCTTCGTATGCATTTAACGGTATAAAACCGTAAACCACATTGCACTAATAAGAATAATTTGTCATTTTGAAGTGCTTGTCAACATGGATTGTATTTCTTTATAATCAATAGGGTGTGTTTGGAACAAAAAGTAGAGTTAGTGAGCCTTAGTTTGAGGAATTGTTGGATATGAGTTTGAAG

mRNA sequence

AAAGAAAAATTAGAAAAATCCTAGCCAGTCATCCTTTTTCTCTCTCCCTCTCTTCCCATCGGGAGTTAGCCACACGTACCCTCTTTGTTCGCGCTTTCTTCAGCTGCCGCGTCGCCCCTCTTCCTCGATCTCCTCTCCGTTCGACGCTTCCATCTCCGGCGACGCGTGGACAGCGATCACATCGGCGAAGCTTTCCTTGATCTCCTTGTCGGCGACTTGGAGTAGCACGACGACATCTCATACCACCGACTAGAGCAGCGTTTTCCTCCCTTTTGACAAGAGTAAGCGGATTTGGCCATGTTCCAGCAAGGATTCGAGTCCGCTTGATATTATCATTTTGAAAACGCGAATGGCGACTTTCATAAGGGCTCTAAACAAAGCTCATCAAGTTGTATACTTGAAAGCCTCCCCAACCATTTTGAGAAGCAAATTGATGCCCCTTTTGCCTAGTGCTTTTATTGGGTTGGAGAATCTACAAAGCCAACTAACAAATCACAATCAGCATCACCATGGCTGTTTCTTTAGTTTTCGTTGCTCTTCCACAAGTACAAATCCTCACATCGATCTCTCAAATGAAGATAGCAAGAGACATTTATTCAATAGGTTGTTGTACCGGAGCAAACAACGAGGGTTTTTGGAATTGGATTTGGTACTTGGGAAATGGGTAGAGGATCACATCAATTCTTTAGATGCAGATGGTGTTCAATCTCTAATTAATGTTCTTGACCTGGAAAATCCAGATTTATGGAAATGGTTAACTGGCCAGGAGCAACCCCCTGAAGCAGTGAAAACAAATCCTGTATTTATTGGTGTGCAAGAGAAGGTCATGAACAATCTCAACAAACATGCCTCACCTGAGACACGAACACCACCTGGGCAACAATGGGTAAGGGGTTGGGATGATTTCAAGAGAGGTCGGGATGGCCCCATAACAGGAAATCAGTAACTCTTCCGTTAAACTTTATATGTAATCTCTCTTTTAAGTATATAAGAACAGAAGAATCCAAGTGAGGTTTATCATATAATTGTTCGTAATGAATGGTGTGCTGTGAATAAGTTAACCCATCAAGGACTCTAAAGGGAACATTATTCAGTGTGACTCTCCCTTTAAACCCTTGATCTATAGTGAATTAATAATTGTTTTCTTCGTATGCATTTAACGGTATAAAACCGTAAACCACATTGCACTAATAAGAATAATTTGTCATTTTGAAGTGCTTGTCAACATGGATTGTATTTCTTTATAATCAATAGGGTGTGTTTGGAACAAAAAGTAGAGTTAGTGAGCCTTAGTTTGAGGAATTGTTGGATATGAGTTTGAAG

Coding sequence (CDS)

ATGGCGACTTTCATAAGGGCTCTAAACAAAGCTCATCAAGTTGTATACTTGAAAGCCTCCCCAACCATTTTGAGAAGCAAATTGATGCCCCTTTTGCCTAGTGCTTTTATTGGGTTGGAGAATCTACAAAGCCAACTAACAAATCACAATCAGCATCACCATGGCTGTTTCTTTAGTTTTCGTTGCTCTTCCACAAGTACAAATCCTCACATCGATCTCTCAAATGAAGATAGCAAGAGACATTTATTCAATAGGTTGTTGTACCGGAGCAAACAACGAGGGTTTTTGGAATTGGATTTGGTACTTGGGAAATGGGTAGAGGATCACATCAATTCTTTAGATGCAGATGGTGTTCAATCTCTAATTAATGTTCTTGACCTGGAAAATCCAGATTTATGGAAATGGTTAACTGGCCAGGAGCAACCCCCTGAAGCAGTGAAAACAAATCCTGTATTTATTGGTGTGCAAGAGAAGGTCATGAACAATCTCAACAAACATGCCTCACCTGAGACACGAACACCACCTGGGCAACAATGGGTAAGGGGTTGGGATGATTTCAAGAGAGGTCGGGATGGCCCCATAACAGGAAATCAGTAA

Protein sequence

MATFIRALNKAHQVVYLKASPTILRSKLMPLLPSAFIGLENLQSQLTNHNQHHHGCFFSFRCSSTSTNPHIDLSNEDSKRHLFNRLLYRSKQRGFLELDLVLGKWVEDHINSLDADGVQSLINVLDLENPDLWKWLTGQEQPPEAVKTNPVFIGVQEKVMNNLNKHASPETRTPPGQQWVRGWDDFKRGRDGPITGNQ
Homology
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BLAST of Lsi11G000550 vs. Swiss-Prot
Match: SDAF2_ARATH (Succinate dehydrogenase assembly factor 2, mitochondrial OS=Arabidopsis thaliana GN=SDHAF2 PE=1 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 1.2e-55
Identity = 109/193 (56.48%), Postives = 138/193 (71.50%), Query Frame = 1 

Query: 6   RALNKAHQVVYLKASPTILRSKLMPLLPSAFIGLENLQSQLTNHNQHHHGCFFSFRCSST 65
           +AL   H+++  +++  + RS ++P          N    +   N    G  F    +++
Sbjct: 5   KALINVHRII--RSTAVVGRSSIIP-------AAANRSYPIIFRNGVDLGARFFCENTAS 64

Query: 66  STNPHIDLSNEDSKRHLFNRLLYRSKQRGFLELDLVLGKWVEDHINSLDADGVQSLINVL 125
           + N  IDLSNE++KR   NRLLYRSKQRGFLELDLVLG WVE+++NS+D +GV+SLI+VL
Sbjct: 65  AQNFDIDLSNEENKRRTINRLLYRSKQRGFLELDLVLGNWVEENVNSMDENGVKSLIHVL 124

Query: 126 DLENPDLWKWLTGQEQPPEAVKTNPVFIGVQEKVMNNLNKHASPETRTPPGQQWVRGWDD 185
           +LENPDLWKWLT QEQPPEAV +NPVF  + EKVM NLNKHA+PETR   GQ WVRGWDD
Sbjct: 125 NLENPDLWKWLTEQEQPPEAVSSNPVFSALHEKVMKNLNKHAAPETRAAAGQPWVRGWDD 184

Query: 186 FKRGRDGPITGNQ 199
           FKRGRD PI+GNQ
Sbjct: 185 FKRGRDAPISGNQ 188

[Close]
BLAST of Lsi11G000550 vs. Swiss-Prot
Match: SDHF2_CRYNB (Succinate dehydrogenase assembly factor 2, mitochondrial OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=CNBA4490 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.8e-06
Identity = 30/100 (30.00%), Postives = 52/100 (52.00%), Query Frame = 1 

Query: 71  IDLSNEDSKRHLFNRLLYRSKQRGFLELDLVLGKWVEDHINSLDADGVQSLINVLDLENP 130
           +D + ED K  L  RL+Y++++RG LE DL+L  +  D + ++D + ++    +LD  + 
Sbjct: 68  LDRTGEDEKT-LRARLIYQTRKRGTLETDLILSTFARDELPNMDFEEMKQFDKLLDEPDW 127

Query: 131 DLWKWLTGQEQPPEAVKTNPVFIGVQEKVMNNLNKHASPE 171
           D++ W   +  PP   K  P        ++  L KHA  E
Sbjct: 128 DIFYWSVKKRDPPARWKGTP--------LLEKLQKHAKNE 158

[Close]
BLAST of Lsi11G000550 vs. Swiss-Prot
Match: SDHF2_CRYNJ (Succinate dehydrogenase assembly factor 2, mitochondrial OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=CNA04680 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.8e-06
Identity = 30/100 (30.00%), Postives = 52/100 (52.00%), Query Frame = 1 

Query: 71  IDLSNEDSKRHLFNRLLYRSKQRGFLELDLVLGKWVEDHINSLDADGVQSLINVLDLENP 130
           +D + ED K  L  RL+Y++++RG LE DL+L  +  D + ++D + ++    +LD  + 
Sbjct: 68  LDRTGEDEKT-LRARLIYQTRKRGTLETDLILSTFARDELPNMDFEEMKQFDKLLDEPDW 127

Query: 131 DLWKWLTGQEQPPEAVKTNPVFIGVQEKVMNNLNKHASPE 171
           D++ W   +  PP   K  P        ++  L KHA  E
Sbjct: 128 DIFYWSVKKRDPPARWKGTP--------LLEKLQKHAKNE 158

[Close]
BLAST of Lsi11G000550 vs. Swiss-Prot
Match: SDHF2_SCHJY (Succinate dehydrogenase assembly factor 2, mitochondrial OS=Schizosaccharomyces japonicus (strain yFS275 / FY16936) GN=SJAG_01895 PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 8.7e-06
Identity = 25/74 (33.78%), Postives = 47/74 (63.51%), Query Frame = 1 

Query: 71  IDLSNEDSKRHLFNRLLYRSKQRGFLELDLVLGKWVEDHINSLDADGVQSLINVLDLENP 130
           +D S E  K  L +RL+Y+S++RG LE DL+L  + +++++  + + ++   N+L+  + 
Sbjct: 43  VDRSKETEKL-LRSRLVYQSRKRGILETDLILSGFAKEYLSKYNVELLKEYDNLLNEADW 102

Query: 131 DLWKWLTGQEQPPE 145
           D+  W TG+ Q PE
Sbjct: 103 DILYWCTGERQAPE 115

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BLAST of Lsi11G000550 vs. TrEMBL
Match: A0A0A0LKF9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G072460 PE=4 SV=1)

HSP 1 Score: 365.5 bits (937), Expect = 4.0e-98
Identity = 173/198 (87.37%), Postives = 188/198 (94.95%), Query Frame = 1 

Query: 1   MATFIRALNKAHQVVYLKASPTILRSKLMPLLPSAFIGLENLQSQLTNHNQHHHGCFFSF 60
           MATFIRALNKAHQV+YLKASPTILRSK MPLLP+AFIGL+NLQ +LTN NQ+HHGCF S 
Sbjct: 68  MATFIRALNKAHQVLYLKASPTILRSKSMPLLPTAFIGLKNLQRELTNRNQNHHGCFSSV 127

Query: 61  RCSSTSTNPHIDLSNEDSKRHLFNRLLYRSKQRGFLELDLVLGKWVEDHINSLDADGVQS 120
             SSTSTNP IDLSNEDSKR LFNRLLYRSKQRGFLELDL+LGKWVEDHI+SLDADG+++
Sbjct: 128 HFSSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRA 187

Query: 121 LINVLDLENPDLWKWLTGQEQPPEAVKTNPVFIGVQEKVMNNLNKHASPETRTPPGQQWV 180
           LINVLDLENPDLWKWLTGQEQPPEA+KTNPVF GV+EKV++NLNKHASPETRTPPGQQWV
Sbjct: 188 LINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRTPPGQQWV 247

Query: 181 RGWDDFKRGRDGPITGNQ 199
           RGWDDFK+GRDGPITGNQ
Sbjct: 248 RGWDDFKKGRDGPITGNQ 265

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BLAST of Lsi11G000550 vs. TrEMBL
Match: K4BLW2_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 5.8e-57
Identity = 108/158 (68.35%), Postives = 129/158 (81.65%), Query Frame = 1 

Query: 44  SQLTNHNQHHH--GCFFSFRCSSTSTNP-HIDLSNEDSKRHLFNRLLYRSKQRGFLELDL 103
           S L +HN +    G F  F  S+ +++P +IDLS+E+SKR LFNRL+YRSKQRG+LELDL
Sbjct: 27  STLQSHNLYRPLAGTFSRFISSNETSSPMNIDLSDEESKRRLFNRLIYRSKQRGYLELDL 86

Query: 104 VLGKWVEDHINSLDADGVQSLINVLDLENPDLWKWLTGQEQPPEAVKTNPVFIGVQEKVM 163
           VLGKWVE+HI S+D +G++SL++VLDLENPDLWKWLTGQEQPP+A+ TNPVF  V EKVM
Sbjct: 87  VLGKWVEEHIQSMDENGIKSLVHVLDLENPDLWKWLTGQEQPPDAISTNPVFSAVHEKVM 146

Query: 164 NNLNKHASPETRTPPGQQWVRGWDDFKRGRDGPITGNQ 199
           NNLN H SPETR  PG+ WVRGWDD KRGRD PI GNQ
Sbjct: 147 NNLNNHTSPETRAVPGKPWVRGWDDIKRGRDAPIAGNQ 184

[Close]
BLAST of Lsi11G000550 vs. TrEMBL
Match: F6HWL4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0283g00060 PE=4 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 7.6e-57
Identity = 105/143 (73.43%), Postives = 123/143 (86.01%), Query Frame = 1 

Query: 56  CFFSFRCSSTSTNPHIDLSNEDSKRHLFNRLLYRSKQRGFLELDLVLGKWVEDHINSLDA 115
           C FS   S +  +P IDLSNE+SKR LFNRLLYRSKQRGFLELDLVLGKWVE+HI+S+D 
Sbjct: 48  CGFS---SDSIHSPEIDLSNEESKRRLFNRLLYRSKQRGFLELDLVLGKWVEEHIHSMDH 107

Query: 116 DGVQSLINVLDLENPDLWKWLTGQEQPPEAVKTNPVFIGVQEKVMNNLNKHASPETRTPP 175
           +G++SL++VLDLENPDLWKWLTGQEQPPEAV  NPVF  V+EKVMNNLN H++PETR  P
Sbjct: 108 NGIKSLVHVLDLENPDLWKWLTGQEQPPEAVSINPVFCAVREKVMNNLNSHSAPETRAMP 167

Query: 176 GQQWVRGWDDFKRGRDGPITGNQ 199
           G+ WVRGWDD K+GRD P++GNQ
Sbjct: 168 GKPWVRGWDDIKKGRDSPVSGNQ 187

[Close]
BLAST of Lsi11G000550 vs. TrEMBL
Match: M1B456_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400014171 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 2.2e-56
Identity = 106/158 (67.09%), Postives = 130/158 (82.28%), Query Frame = 1 

Query: 44  SQLTNHNQHHH--GCFFSFRCSSTSTNP-HIDLSNEDSKRHLFNRLLYRSKQRGFLELDL 103
           S L +HN +    G F  F  S+ +++P +ID S+E+SKR LFNRL+YRSKQRG+LELDL
Sbjct: 27  STLQSHNLYRPLAGTFSRFISSNETSSPINIDFSDEESKRRLFNRLIYRSKQRGYLELDL 86

Query: 104 VLGKWVEDHINSLDADGVQSLINVLDLENPDLWKWLTGQEQPPEAVKTNPVFIGVQEKVM 163
           VLGKWVE+HI S+D +G++SL++VLDLENPDLWKWLTGQEQPP+A+ TNPVF  V+EKVM
Sbjct: 87  VLGKWVEEHIQSMDENGIKSLVHVLDLENPDLWKWLTGQEQPPDAISTNPVFSAVREKVM 146

Query: 164 NNLNKHASPETRTPPGQQWVRGWDDFKRGRDGPITGNQ 199
           NNLN H+SPETR  PG+ WVRGWDD K+GRD PI GNQ
Sbjct: 147 NNLNNHSSPETRAVPGKPWVRGWDDIKKGRDAPIAGNQ 184

[Close]
BLAST of Lsi11G000550 vs. TrEMBL
Match: V4TAF7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032866mg PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 3.8e-56
Identity = 101/136 (74.26%), Postives = 122/136 (89.71%), Query Frame = 1 

Query: 63  SSTSTNPHIDLSNEDSKRHLFNRLLYRSKQRGFLELDLVLGKWVEDHINSLDADGVQSLI 122
           S+T+ +  IDLSNE+ K+ LFNRLLYRSKQRGFLELDLVLGKWVE+HI+S+D +G+++L+
Sbjct: 47  SNTTQSLDIDLSNEEKKKRLFNRLLYRSKQRGFLELDLVLGKWVEEHIHSMDKNGIKALV 106

Query: 123 NVLDLENPDLWKWLTGQEQPPEAVKTNPVFIGVQEKVMNNLNKHASPETRTPPGQQWVRG 182
           +VL+LENPDLWKWLTGQEQPPEAVKTNPVF  +  KVMNNLN +ASPETR+ PGQ WVRG
Sbjct: 107 DVLNLENPDLWKWLTGQEQPPEAVKTNPVFSALHNKVMNNLNSYASPETRSEPGQPWVRG 166

Query: 183 WDDFKRGRDGPITGNQ 199
           WDDFK+GRD P++GNQ
Sbjct: 167 WDDFKKGRDSPLSGNQ 182

[Close]
BLAST of Lsi11G000550 vs. TAIR10
Match: AT5G51040.3 (AT5G51040.3 unknown protein)

HSP 1 Score: 209.9 bits (533), Expect = 1.4e-54
Identity = 109/202 (53.96%), Postives = 138/202 (68.32%), Query Frame = 1 

Query: 6   RALNKAHQVVYLKASPTILRSKLMPLLPSAFIGLENLQSQLTNHNQHHHGCFFSFRCSST 65
           +AL   H+++  +++  + RS ++P          N    +   N    G  F    +++
Sbjct: 5   KALINVHRII--RSTAVVGRSSIIP-------AAANRSYPIIFRNGVDLGARFFCENTAS 64

Query: 66  STNPHIDLSNEDSKRHLFNRLLYRSKQRGFLELDLVLGKWVEDHINSLDADGVQSLINVL 125
           + N  IDLSNE++KR   NRLLYRSKQRGFLELDLVLG WVE+++NS+D +GV+SLI+VL
Sbjct: 65  AQNFDIDLSNEENKRRTINRLLYRSKQRGFLELDLVLGNWVEENVNSMDENGVKSLIHVL 124

Query: 126 DL---------ENPDLWKWLTGQEQPPEAVKTNPVFIGVQEKVMNNLNKHASPETRTPPG 185
           +L         ENPDLWKWLT QEQPPEAV +NPVF  + EKVM NLNKHA+PETR   G
Sbjct: 125 NLVESEATKLLENPDLWKWLTEQEQPPEAVSSNPVFSALHEKVMKNLNKHAAPETRAAAG 184

Query: 186 QQWVRGWDDFKRGRDGPITGNQ 199
           Q WVRGWDDFKRGRD PI+GNQ
Sbjct: 185 QPWVRGWDDFKRGRDAPISGNQ 197

[Close]
BLAST of Lsi11G000550 vs. NCBI nr
Match: gi|659082578|ref|XP_008441916.1| (PREDICTED: uncharacterized protein LOC103485912 [Cucumis melo])

HSP 1 Score: 372.1 bits (954), Expect = 6.1e-100
Identity = 177/198 (89.39%), Postives = 187/198 (94.44%), Query Frame = 1 

Query: 1   MATFIRALNKAHQVVYLKASPTILRSKLMPLLPSAFIGLENLQSQLTNHNQHHHGCFFSF 60
           MATFIRAL+KAHQV+YLKASPTILRSKLMP LPS FIGLENLQSQLTN NQ+HHGC FS 
Sbjct: 3   MATFIRALSKAHQVLYLKASPTILRSKLMPFLPSVFIGLENLQSQLTNRNQNHHGCSFSL 62

Query: 61  RCSSTSTNPHIDLSNEDSKRHLFNRLLYRSKQRGFLELDLVLGKWVEDHINSLDADGVQS 120
             SSTSTNP IDLSNEDSKR LFNRLLYRSKQRGFLELDL+LGKWVEDHI+SLDADG++ 
Sbjct: 63  HFSSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRD 122

Query: 121 LINVLDLENPDLWKWLTGQEQPPEAVKTNPVFIGVQEKVMNNLNKHASPETRTPPGQQWV 180
           LINVLDLENPDLWKWLTGQEQPPEA+KTNPVF GV+EKVMNNLNKHASPETRTPPGQQWV
Sbjct: 123 LINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVMNNLNKHASPETRTPPGQQWV 182

Query: 181 RGWDDFKRGRDGPITGNQ 199
           RGWDDFK+GRDGPITGNQ
Sbjct: 183 RGWDDFKKGRDGPITGNQ 200

[Close]
BLAST of Lsi11G000550 vs. NCBI nr
Match: gi|449470271|ref|XP_004152841.1| (PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Cucumis sativus])

HSP 1 Score: 365.5 bits (937), Expect = 5.7e-98
Identity = 173/198 (87.37%), Postives = 188/198 (94.95%), Query Frame = 1 

Query: 1   MATFIRALNKAHQVVYLKASPTILRSKLMPLLPSAFIGLENLQSQLTNHNQHHHGCFFSF 60
           MATFIRALNKAHQV+YLKASPTILRSK MPLLP+AFIGL+NLQ +LTN NQ+HHGCF S 
Sbjct: 1   MATFIRALNKAHQVLYLKASPTILRSKSMPLLPTAFIGLKNLQRELTNRNQNHHGCFSSV 60

Query: 61  RCSSTSTNPHIDLSNEDSKRHLFNRLLYRSKQRGFLELDLVLGKWVEDHINSLDADGVQS 120
             SSTSTNP IDLSNEDSKR LFNRLLYRSKQRGFLELDL+LGKWVEDHI+SLDADG+++
Sbjct: 61  HFSSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRA 120

Query: 121 LINVLDLENPDLWKWLTGQEQPPEAVKTNPVFIGVQEKVMNNLNKHASPETRTPPGQQWV 180
           LINVLDLENPDLWKWLTGQEQPPEA+KTNPVF GV+EKV++NLNKHASPETRTPPGQQWV
Sbjct: 121 LINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRTPPGQQWV 180

Query: 181 RGWDDFKRGRDGPITGNQ 199
           RGWDDFK+GRDGPITGNQ
Sbjct: 181 RGWDDFKKGRDGPITGNQ 198

[Close]
BLAST of Lsi11G000550 vs. NCBI nr
Match: gi|700206113|gb|KGN61232.1| (hypothetical protein Csa_2G072460 [Cucumis sativus])

HSP 1 Score: 365.5 bits (937), Expect = 5.7e-98
Identity = 173/198 (87.37%), Postives = 188/198 (94.95%), Query Frame = 1 

Query: 1   MATFIRALNKAHQVVYLKASPTILRSKLMPLLPSAFIGLENLQSQLTNHNQHHHGCFFSF 60
           MATFIRALNKAHQV+YLKASPTILRSK MPLLP+AFIGL+NLQ +LTN NQ+HHGCF S 
Sbjct: 68  MATFIRALNKAHQVLYLKASPTILRSKSMPLLPTAFIGLKNLQRELTNRNQNHHGCFSSV 127

Query: 61  RCSSTSTNPHIDLSNEDSKRHLFNRLLYRSKQRGFLELDLVLGKWVEDHINSLDADGVQS 120
             SSTSTNP IDLSNEDSKR LFNRLLYRSKQRGFLELDL+LGKWVEDHI+SLDADG+++
Sbjct: 128 HFSSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRA 187

Query: 121 LINVLDLENPDLWKWLTGQEQPPEAVKTNPVFIGVQEKVMNNLNKHASPETRTPPGQQWV 180
           LINVLDLENPDLWKWLTGQEQPPEA+KTNPVF GV+EKV++NLNKHASPETRTPPGQQWV
Sbjct: 188 LINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRTPPGQQWV 247

Query: 181 RGWDDFKRGRDGPITGNQ 199
           RGWDDFK+GRDGPITGNQ
Sbjct: 248 RGWDDFKKGRDGPITGNQ 265

[Close]
BLAST of Lsi11G000550 vs. NCBI nr
Match: gi|460380217|ref|XP_004235854.1| (PREDICTED: uncharacterized protein LOC101244854 [Solanum lycopersicum])

HSP 1 Score: 228.8 bits (582), Expect = 8.3e-57
Identity = 108/158 (68.35%), Postives = 129/158 (81.65%), Query Frame = 1 

Query: 44  SQLTNHNQHHH--GCFFSFRCSSTSTNP-HIDLSNEDSKRHLFNRLLYRSKQRGFLELDL 103
           S L +HN +    G F  F  S+ +++P +IDLS+E+SKR LFNRL+YRSKQRG+LELDL
Sbjct: 27  STLQSHNLYRPLAGTFSRFISSNETSSPMNIDLSDEESKRRLFNRLIYRSKQRGYLELDL 86

Query: 104 VLGKWVEDHINSLDADGVQSLINVLDLENPDLWKWLTGQEQPPEAVKTNPVFIGVQEKVM 163
           VLGKWVE+HI S+D +G++SL++VLDLENPDLWKWLTGQEQPP+A+ TNPVF  V EKVM
Sbjct: 87  VLGKWVEEHIQSMDENGIKSLVHVLDLENPDLWKWLTGQEQPPDAISTNPVFSAVHEKVM 146

Query: 164 NNLNKHASPETRTPPGQQWVRGWDDFKRGRDGPITGNQ 199
           NNLN H SPETR  PG+ WVRGWDD KRGRD PI GNQ
Sbjct: 147 NNLNNHTSPETRAVPGKPWVRGWDDIKRGRDAPIAGNQ 184

[Close]
BLAST of Lsi11G000550 vs. NCBI nr
Match: gi|731439757|ref|XP_010646726.1| (PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Vitis vinifera])

HSP 1 Score: 228.4 bits (581), Expect = 1.1e-56
Identity = 105/143 (73.43%), Postives = 123/143 (86.01%), Query Frame = 1 

Query: 56  CFFSFRCSSTSTNPHIDLSNEDSKRHLFNRLLYRSKQRGFLELDLVLGKWVEDHINSLDA 115
           C FS   S +  +P IDLSNE+SKR LFNRLLYRSKQRGFLELDLVLGKWVE+HI+S+D 
Sbjct: 48  CGFS---SDSIHSPEIDLSNEESKRRLFNRLLYRSKQRGFLELDLVLGKWVEEHIHSMDH 107

Query: 116 DGVQSLINVLDLENPDLWKWLTGQEQPPEAVKTNPVFIGVQEKVMNNLNKHASPETRTPP 175
           +G++SL++VLDLENPDLWKWLTGQEQPPEAV  NPVF  V+EKVMNNLN H++PETR  P
Sbjct: 108 NGIKSLVHVLDLENPDLWKWLTGQEQPPEAVSINPVFCAVREKVMNNLNSHSAPETRAMP 167

Query: 176 GQQWVRGWDDFKRGRDGPITGNQ 199
           G+ WVRGWDD K+GRD P++GNQ
Sbjct: 168 GKPWVRGWDDIKKGRDSPVSGNQ 187

The following BLAST results are available for this feature:
BLAST of Lsi11G000550 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SDAF2_ARATH1.2e-5556.48Succinate dehydrogenase assembly factor 2, mitochondrial OS=Arabidopsis thaliana... [more]
SDHF2_CRYNB1.8e-0630.00Succinate dehydrogenase assembly factor 2, mitochondrial OS=Cryptococcus neoform... [more]
SDHF2_CRYNJ1.8e-0630.00Succinate dehydrogenase assembly factor 2, mitochondrial OS=Cryptococcus neoform... [more]
SDHF2_SCHJY8.7e-0633.78Succinate dehydrogenase assembly factor 2, mitochondrial OS=Schizosaccharomyces ... [more]
BLAST of Lsi11G000550 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LKF9_CUCSA4.0e-9887.37Uncharacterized protein OS=Cucumis sativus GN=Csa_2G072460 PE=4 SV=1[more]
K4BLW2_SOLLC5.8e-5768.35Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
F6HWL4_VITVI7.6e-5773.43Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0283g00060 PE=4 SV=... [more]
M1B456_SOLTU2.2e-5667.09Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400014171 PE=4 SV=1[more]
V4TAF7_9ROSI3.8e-5674.26Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032866mg PE=4 SV=1[more]
BLAST of Lsi11G000550 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G51040.31.4e-5453.96 unknown protein[more]
BLAST of Lsi11G000550 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659082578|ref|XP_008441916.1|6.1e-10089.39PREDICTED: uncharacterized protein LOC103485912 [Cucumis melo][more]
gi|449470271|ref|XP_004152841.1|5.7e-9887.37PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Cucumis sat... [more]
gi|700206113|gb|KGN61232.1|5.7e-9887.37hypothetical protein Csa_2G072460 [Cucumis sativus][more]
gi|460380217|ref|XP_004235854.1|8.3e-5768.35PREDICTED: uncharacterized protein LOC101244854 [Solanum lycopersicum][more]
gi|731439757|ref|XP_010646726.1|1.1e-5673.43PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Vitis vinif... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005631SDH
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi11G000550.1Lsi11G000550.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005631Flavinator of succinate dehydrogenaseGENE3DG3DSA:1.10.150.250coord: 78..164
score: 3.9
IPR005631Flavinator of succinate dehydrogenasePFAMPF03937Sdh5coord: 84..152
score: 1.4
IPR005631Flavinator of succinate dehydrogenaseunknownSSF109910YgfY-likecoord: 84..149
score: 4.32
NoneNo IPR availablePANTHERPTHR12469PROTEIN EMI5 HOMOLOG, MITOCHONDRIALcoord: 69..179
score: 9.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi11G000550CmaCh04G019350Cucurbita maxima (Rimu)cmalsiB635
Lsi11G000550CmoCh04G020520Cucurbita moschata (Rifu)cmolsiB623
Lsi11G000550Cla016944Watermelon (97103) v1lsiwmB109
Lsi11G000550ClCG11G000550Watermelon (Charleston Gray)lsiwcgB084
Lsi11G000550Cla97C11G206870Watermelon (97103) v2lsiwmbB079
Lsi11G000550Bhi07G000005Wax gourdlsiwgoB133
Lsi11G000550Cp4.1LG01g16830Cucurbita pepo (Zucchini)cpelsiB319
Lsi11G000550Carg24967Silver-seed gourdcarlsiB667
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi11G000550Wax gourdlsiwgoB134
Lsi11G000550Wild cucumber (PI 183967)cpilsiB341
Lsi11G000550Watermelon (Charleston Gray)lsiwcgB087
Lsi11G000550Watermelon (97103) v1lsiwmB114
Lsi11G000550Cucumber (Gy14) v2cgyblsiB310
Lsi11G000550Melon (DHL92) v3.6.1lsimedB086