Cp4.1LG01g16830 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g16830
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionAnkyrin repeat family protein
LocationCp4.1LG01 : 10574696 .. 10579637 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAAATGATTTAGTAGATTAACGTAATATAGTTGTCCTCTTTATGTGTCTTATATTTGTCCTCTTGATGTTCCTTTCAGATGGAAACCCAGCTTCATGAACAAATTCTCATGAATTGGTTTCTATTGGTCAGGGTTTCGAGCTCAGGAGGGGGAGGAAGGGAACGTTTGAAGGTGAAGAAAGGCGAGATATGGTCTCATATAAAAAGGAAACAAGAAGAACCTACTGACCTTACTCCAAAGTTGTTATTACGACCTTTGGTTAAAAGAGGATTTCAAAACTAGATAAGAGGAAGAATTTTGAATGTGAATGGAACATCAAACCACATTCATCTCACTTCTCCTTTTTAAACTTTGAATTTTGAACTTATTTTTAGAGCTTACAAAAACATTTTATTTGAATTTTGAACTTATTTTTAGACCTTATTTGAACTTATTTTTAGTCTCAACCAGAAATTAAATATCTGATTTTTTTTTTTCTTATTAAGTTTGGAAGAAAAATGTTTTAAATTTTTTTCATATTAAAAAGAAAAAATTAAAAAATTGAGTCAAAATCACTCAAAGGGGTAAAATGGTCATATTGAGTAGGCTGGACAAAACCCCAATCACTAGGTCTCTAGACTCTCTACGCGTTCCCCCCTCTGGCCATAACCCGTTTCGTGTATTGGGCAGACATAGGCCACAACAACCACTGCTTCGATTCTCTCCTGTTCCTGCAACCACCACACACAACGTCTCCCTTCTCCACTTTCTCTCTTCCACACCTTTCATTCTTCCTCCGGATTCCTTCTCCCTTCTCTCCCGCCAACGCCAACGCCAACGCCAACGCCAACGCCAACGCCAACCACGCCAACCACCTCTTCTTCCGGATACGACGTTTGCTTCTCTTCTGCCCTTTAATTTTCTTCTTCTTTTCCCAATCCTCTTATTATAGTTTTCAAAACACGAATGGCGACGTTCAGAAGGGCTGTACTCAAAGCTCATCAAGTTCTGTACCTGAAACCCTCCTCCACCGTTTTCAGAAGCAAATCGATGACCCTTTTGCCTACCGCTTATATATTGTTGGAGAATCTACAAGGGCGATTACCAAATCGCAATCAGAATCAACATGGTTCTTTCTTTCGTTTTCGTTGCTCTTCCACGACTGTAAATCCTTTTTTCACAGATATCGATCTCTCAAATGAAGAGAGCAAGAGGCGTTTGTTCAATAGGTTCAATCTCACTTCCTTTGCATCATTAACTTTCATACCCCCCTTGCTTTCTTTCTCTTAATTTTTTTGGCAATTTTGTTTCGATTGACAAGGTTTTTTGGTTGTTGGATTCAACAGGTTGCTGTACCGGAGCAAACAACGGGGGTTTTTGGAACTGGATTTGGTACTTGGAAAATGGGTAGAAGATCACATCAATTCCTTGGATGCAGATGGTATTAGAGCTCTAATTAAAGTTCTTGACCTGGTAATCTAGTCTTATGCCCATATTTTATAGTTATTTTCTATGTTTTGTGTTCTAGCCCTAGTTAGTTTTAATCCATAGCTGGGTGGAGGCCTTAGTGCCACATGGAATGTTTCGTCTTTTTTCGTCATGTATTTGCCCAAATTTTGCACCATGATTTTCTATGTCACCTTCTCATCAATGAGGGCAGATTGATAGTGATGGTTCTGGTCAATCTGGTCAATCTTCATCCCATTCTTATCCCTCCCTCGTGGGGCGGCATTCCGAGCTTGAATGTAGCTCTGAGAAATGAGAGAAGAAAGAAAACATTAAAGAATCCACTTTTGTTATTATGGAGTTGATTTGCACCTGCATAAAAATTTCAGGCCAAGACAAGTTCAAGGTTTTTATGAGCCACATTTGGACACAATTGTTCAAACGATGAGTCACTGAATGGCAGAAAAGCACAGCATATGATGCAAACATGCAAAAAACCGGAGGAGGATGTGTTGTGGCATATCTTTACCGCTGAAAAGATGATGACAAGGGCACGTTGGGTTTCTCAAGCCAAATTTTTGTATAATATGGGAGGGTACTAGTGAGGAATATATTGGAAATATTAGTAAGATAATAGTAAGGGGTTAAGTGGTAATTAGTTTGATGAAGGGGGGTTTGGGTTATAAATTAAGAGGACTCGAAGTTTCTGGGAGGGTAAATCATTTTGGGGAGTGTCCATTTTGGGACTTGGGAAAGAGACGGCCCTCTGAAATATTTTCATTGATATTGCAACATAGTTATAGCTATATTTCTATTTTCTGTTGTGATCTTGTGTTCAGGTACCTAATGAATTGGTATTAGAGCACGTTCATCTTGGAGTTGAAAAATATGACTAAAAAGGGATTAGAAGAGAGGGTGGAAGCTACTGGAAGGACATTGCCGAGCTTAAAGGCATGCTGCAAACAATGACTCAAGACTGAGTAGTTGGCAATGGATATACATGAGAGTTCAAGTTCGACATGGGTGATTGTGGTGATTATGTCGGTTCCCCACAAAAGTAGTAAATGCTAGAGGAATGATGAATTTAAAATCTCTATAGTACCGGAGGGAAGGGAATCTATTAAGACAAGAAGTTATTGGTGGAATCGGAGATGATGGGGACGAGTGTAACACTTGAGTAAATGAGGGGTATGAATGACTGATACCACATCCAAAGGAGAACAATCTTGAGAATAGGATGGTTAAGGAAAGCTTAAAAAACTGAAAGTAACTTCATAATTAAGCATGGTTTGCTTGGAGCAATTCTATATTGGGTGATCTACTAGGACTTTTCGTACATGTAAGTGAGGACAAGCATGTTGGAAGGGCTTTTGTTAGTTTGTAGGGATAGCCTTCACTCTTAAAAGTGAGGAGCAAGTAACATGATCATGTCGCAGAGGATGTAAGGGAATATGCTAGAGCCATCATGTGCCAAATCCGGATTCCAAATCTTAATCCGATTGTTGACTGTCTCTTGGTTAGAAAGGTGATATGGACGACGTCAACGAAGTAAATGCCATATGAAAAGTGGAGAGAAGAAGTGACAATGATAGAATCTAAAGAGTTTGGCAAGTTTATGGTCTGAGAAGACATGATCATGTCGCAGAGGATGTAAGGGAATATGCTAGAGCCATCATGTGCCAAATCCGGATTCCAAATCTTAATCCGATTGTTGACTGTCTCTTGGTTAGAAAGGTGATATGGACGACGTCAACGAAGTAAATGCCATATGAAAAAAGTGGAGAGAAGAAGTGACAATGATAGAATCCAAGTTTATGGTCTGAGAAGTAATAAGGTAGGCGATCAAGAAGCAATGGAGGAAAGAAGAAAGATATAGCCGATGAGAAGGTGAGGTGGCTAACAGATGAAGAAACGATGAAGTAAGGACAAACATTGTGGAGATGTTGAGTTTGACCAACTATCTGTTTCATAAACCTCCAATTCCATAAACATTGTCGTGAGTTTGTCAAAACTTTGGGCGTGGAGTATTGATAAACCTCAAATTCCACCAACTATCCATTATTTATTTATTTATTCAAGAAGGAAAAAAGACAACAACATCATCAATCTTGAAGGAAGTTGAATGGAGAAGTTGGGGTTTCTGTCATGTGGGGTCAAAGGCGGTTATTAGAAGTTATATGTTTGTGTGTTGTTGGCTATGTTTTGTGTGGGGAGAGTCCCCATCTCTTGAATGTTTAGGTTGTATACAACTTTATCTTGAATGTCTACAAATAATCCTCACTTCACTATTCAACTGTCAACACCCATTCTTAGGAAGGTTGACAGATAGTTGGAGATCCACTACAAAAACGAATAATAGTAAACTCACCGATTATGGAGAGAGTTGGATTAGATTGTGAAGTTTATTCGGGTCATCATTTTTGGGTTGGTCAAATAATTTTTCCCAACCCAACCTTACCCGTCCACACTCCTACTCATTTCTATCCCCTTGGCCAGCTATTCTAGGGCCTTCATGGCACTAGTCCACTAACTATTAAAATCAAGGGTAACCGCCAATGCCTGGTGACAAAGGGAATGGTGGAGGAGATAGTTTCAATAAGTGTGAAAGTTACATCAATGGGTAGTAAAATCGTGGGGAAGGGTTTGAGTTAGTGTTCCTTACCAACAAAATAGGTGATTTCAGTTCAGTCCATCTGCAGAAACTGGGTATTGGTGATTTCAGTTTCTCATTTTTTTTTTTTCATTCTTTTAAATCTATTGTAAATGATTTTGAGGACTACTTTTTTGGATACTGCTTATTTCTTTTGCAAGTATCTGTATGTGTGTTCTTCTGTTGTTCAGGAAAATCCAGATCTATGGAAGTGGTTAACTGGCCAAGAGCAACCCCCTGAAGCCGTGAAGACAAATCCTGTGAGCATCCAAACTAGTGTTTCCCTTTTTATGTTTGGACTAAAAAATATGTGATGTTAGAATTAGAGCATCTATTTGTAGGTATTTACTGATGTGCAAGAGAAGGTGATGAACAATCTCAACAAACATGCCTCACCCGAGACACGAACACCGCCTGGGCAACAATGGGTAAGGGGTTGGGATGATTTCAAGAGAGGTCGGGATGGCCCCATAACAGGAAACCAGTAGCTCTGTCTTCCATTAAAGAATTTTATGTTATAAGTACTGCAGTTTCTCAAACTTGTTTGTTACGAATGGTCGGCTGTGAATAAGTTTCCCATCAAGTCTCTCCCCTCTAAACCCTTGGGATCTATAGTGAAATAATGGCTGTTTTTTTTCTTTCACATACATTCACCAAATAATTCATCATTTCCAAGTGCTTGCCACCATGGCTAGCTTGCATTTCTTTATAGTTTGTACTTGATGTAATAAGCTTTGTATTAATTTTATAGTTTGCATTAGTGTTACGACCTTCAATGATCTACCTCATAAACTATTGGGTCATAAACCATCCGTAGTATGAGTGAGTATAAAATATTCAATGTAGAATTATTCATGTTATGG

mRNA sequence

ATGGGTTTCGAGCTCAGGAGGGGGAGGAAGGGAACGTTTGAAGTTTTCAAAACACGAATGGCGACGTTCAGAAGGGCTGTACTCAAAGCTCATCAAGTTCTGTACCTGAAACCCTCCTCCACCGTTTTCAGAAGCAAATCGATGACCCTTTTGCCTACCGCTTATATATTGTTGGAGAATCTACAAGGGCGATTACCAAATCGCAATCAGAATCAACATGGTTCTTTCTTTCGTTTTCGTTGCTCTTCCACGACTGTAAATCCTTTTTTCACAGATATCGATCTCTCAAATGAAGAGAGCAAGAGGCGTTTGTTCAATAGGTTGCTGTACCGGAGCAAACAACGGGGGTTTTTGGAACTGGATTTGGTACTTGGAAAATGGGTAGAAGATCACATCAATTCCTTGGATGCAGATGGTATTAGAGCTCTAATTAAAGTTCTTGACCTGGAAAATCCAGATCTATGGAAGTGGTTAACTGGCCAAGAGCAACCCCCTGAAGCCGTGAAGACAAATCCTGTATTTACTGATGTGCAAGAGAAGGTGATGAACAATCTCAACAAACATGCCTCACCCGAGACACGAACACCGCCTGGGCAACAATGGGTAAGGGGTTGGGATGATTTCAAGAGAGGTCGGGATGGCCCCATAACAGGAAACCAGTAGCTCTGTCTTCCATTAAAGAATTTTATGTTATAAGTACTGCAGTTTCTCAAACTTGTTTGTTACGAATGGTCGGCTGTGAATAAGTTTCCCATCAAGTCTCTCCCCTCTAAACCCTTGGGATCTATAGTGAAATAATGGCTGTTTTTTTTCTTTCACATACATTCACCAAATAATTCATCATTTCCAAGTGCTTGCCACCATGGCTAGCTTGCATTTCTTTATAGTTTGTACTTGATGTAATAAGCTTTGTATTAATTTTATAGTTTGCATTAGTGTTACGACCTTCAATGATCTACCTCATAAACTATTGGGTCATAAACCATCCGTAGTATGAGTGAGTATAAAATATTCAATGTAGAATTATTCATGTTATGG

Coding sequence (CDS)

ATGGGTTTCGAGCTCAGGAGGGGGAGGAAGGGAACGTTTGAAGTTTTCAAAACACGAATGGCGACGTTCAGAAGGGCTGTACTCAAAGCTCATCAAGTTCTGTACCTGAAACCCTCCTCCACCGTTTTCAGAAGCAAATCGATGACCCTTTTGCCTACCGCTTATATATTGTTGGAGAATCTACAAGGGCGATTACCAAATCGCAATCAGAATCAACATGGTTCTTTCTTTCGTTTTCGTTGCTCTTCCACGACTGTAAATCCTTTTTTCACAGATATCGATCTCTCAAATGAAGAGAGCAAGAGGCGTTTGTTCAATAGGTTGCTGTACCGGAGCAAACAACGGGGGTTTTTGGAACTGGATTTGGTACTTGGAAAATGGGTAGAAGATCACATCAATTCCTTGGATGCAGATGGTATTAGAGCTCTAATTAAAGTTCTTGACCTGGAAAATCCAGATCTATGGAAGTGGTTAACTGGCCAAGAGCAACCCCCTGAAGCCGTGAAGACAAATCCTGTATTTACTGATGTGCAAGAGAAGGTGATGAACAATCTCAACAAACATGCCTCACCCGAGACACGAACACCGCCTGGGCAACAATGGGTAAGGGGTTGGGATGATTTCAAGAGAGGTCGGGATGGCCCCATAACAGGAAACCAGTAG

Protein sequence

MGFELRRGRKGTFEVFKTRMATFRRAVLKAHQVLYLKPSSTVFRSKSMTLLPTAYILLENLQGRLPNRNQNQHGSFFRFRCSSTTVNPFFTDIDLSNEESKRRLFNRLLYRSKQRGFLELDLVLGKWVEDHINSLDADGIRALIKVLDLENPDLWKWLTGQEQPPEAVKTNPVFTDVQEKVMNNLNKHASPETRTPPGQQWVRGWDDFKRGRDGPITGNQ
Homology
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BLAST of Cp4.1LG01g16830 vs. Swiss-Prot
Match: SDAF2_ARATH (Succinate dehydrogenase assembly factor 2, mitochondrial OS=Arabidopsis thaliana GN=SDHAF2 PE=1 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 2.4e-57
Identity = 119/201 (59.20%), Postives = 149/201 (74.13%), Query Frame = 1 

Query: 20  MATFRRAVLKAHQVLYLKPSSTVFRSKSMTLLPTAYILLENLQGRLPNRNQNQHGSFFRF 79
           MAT R+A++  H+++  + ++ V RS   +++P A     N    +  RN    G+  RF
Sbjct: 1   MAT-RKALINVHRII--RSTAVVGRS---SIIPAA----ANRSYPIIFRNGVDLGA--RF 60

Query: 80  RCSSTTVNPFFTDIDLSNEESKRRLFNRLLYRSKQRGFLELDLVLGKWVEDHINSLDADG 139
            C +T     F DIDLSNEE+KRR  NRLLYRSKQRGFLELDLVLG WVE+++NS+D +G
Sbjct: 61  FCENTASAQNF-DIDLSNEENKRRTINRLLYRSKQRGFLELDLVLGNWVEENVNSMDENG 120

Query: 140 IRALIKVLDLENPDLWKWLTGQEQPPEAVKTNPVFTDVQEKVMNNLNKHASPETRTPPGQ 199
           +++LI VL+LENPDLWKWLT QEQPPEAV +NPVF+ + EKVM NLNKHA+PETR   GQ
Sbjct: 121 VKSLIHVLNLENPDLWKWLTEQEQPPEAVSSNPVFSALHEKVMKNLNKHAAPETRAAAGQ 180

Query: 200 QWVRGWDDFKRGRDGPITGNQ 221
            WVRGWDDFKRGRD PI+GNQ
Sbjct: 181 PWVRGWDDFKRGRDAPISGNQ 188

[Close]
BLAST of Cp4.1LG01g16830 vs. Swiss-Prot
Match: SDHF2_CRYNB (Succinate dehydrogenase assembly factor 2, mitochondrial OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=CNBA4490 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.5e-06
Identity = 25/85 (29.41%), Postives = 48/85 (56.47%), Query Frame = 1 

Query: 99  ESKRRLFNRLLYRSKQRGFLELDLVLGKWVEDHINSLDADGIRALIKVLDLENPDLWKWL 158
           E ++ L  RL+Y++++RG LE DL+L  +  D + ++D + ++   K+LD  + D++ W 
Sbjct: 73  EDEKTLRARLIYQTRKRGTLETDLILSTFARDELPNMDFEEMKQFDKLLDEPDWDIFYWS 132

Query: 159 TGQEQPPEAVKTNPVFTDVQEKVMN 184
             +  PP   K  P+   +Q+   N
Sbjct: 133 VKKRDPPARWKGTPLLEKLQKHAKN 157

[Close]
BLAST of Cp4.1LG01g16830 vs. Swiss-Prot
Match: SDHF2_CRYNJ (Succinate dehydrogenase assembly factor 2, mitochondrial OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=CNA04680 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.5e-06
Identity = 25/85 (29.41%), Postives = 48/85 (56.47%), Query Frame = 1 

Query: 99  ESKRRLFNRLLYRSKQRGFLELDLVLGKWVEDHINSLDADGIRALIKVLDLENPDLWKWL 158
           E ++ L  RL+Y++++RG LE DL+L  +  D + ++D + ++   K+LD  + D++ W 
Sbjct: 73  EDEKTLRARLIYQTRKRGTLETDLILSTFARDELPNMDFEEMKQFDKLLDEPDWDIFYWS 132

Query: 159 TGQEQPPEAVKTNPVFTDVQEKVMN 184
             +  PP   K  P+   +Q+   N
Sbjct: 133 VKKRDPPARWKGTPLLEKLQKHAKN 157

[Close]
BLAST of Cp4.1LG01g16830 vs. Swiss-Prot
Match: SDHF2_SCHPO (Succinate dehydrogenase assembly factor 2, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=emi5 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.0e-06
Identity = 26/88 (29.55%), Postives = 50/88 (56.82%), Query Frame = 1 

Query: 99  ESKRRLFNRLLYRSKQRGFLELDLVLGKWVEDHINSLDADGIRALIKVLDLENPDLWKWL 158
           E++  +  RL Y+S++RG LE DL+L  + +D I+      +R   ++LD  + D+  W 
Sbjct: 43  ETRDAMLARLKYQSRKRGILETDLLLSNFAKDQIDKYPVSLLREYDQLLDEPDWDILYWC 102

Query: 159 TGQEQPPEAVKTNPVFTDVQEKVMNNLN 187
           +G+ + PE  K++ VF ++ +   +  N
Sbjct: 103 SGEREAPEKWKSSQVFKELSKYCRSQRN 130

[Close]
BLAST of Cp4.1LG01g16830 vs. Swiss-Prot
Match: SDHF2_SCHJY (Succinate dehydrogenase assembly factor 2, mitochondrial OS=Schizosaccharomyces japonicus (strain yFS275 / FY16936) GN=SJAG_01895 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.6e-06
Identity = 24/83 (28.92%), Postives = 53/83 (63.86%), Query Frame = 1 

Query: 97  NEESKRRLFNRLLYRSKQRGFLELDLVLGKWVEDHINSLDADGIRALIKVLDLENPDLWK 156
           ++E+++ L +RL+Y+S++RG LE DL+L  + +++++  + + ++    +L+  + D+  
Sbjct: 46  SKETEKLLRSRLVYQSRKRGILETDLILSGFAKEYLSKYNVELLKEYDNLLNEADWDILY 105

Query: 157 WLTGQEQPPEAVKTNPVFTDVQE 180
           W TG+ Q PE    + V  D++E
Sbjct: 106 WCTGERQAPEHWLNSRVLRDLKE 128

[Close]
BLAST of Cp4.1LG01g16830 vs. TrEMBL
Match: A0A0A0LKF9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G072460 PE=4 SV=1)

HSP 1 Score: 336.3 bits (861), Expect = 2.9e-89
Identity = 165/205 (80.49%), Postives = 181/205 (88.29%), Query Frame = 1 

Query: 16  FKTRMATFRRAVLKAHQVLYLKPSSTVFRSKSMTLLPTAYILLENLQGRLPNRNQNQHGS 75
           F+ +MATF RA+ KAHQVLYLK S T+ RSKSM LLPTA+I L+NLQ  L NRNQN HG 
Sbjct: 64  FERQMATFIRALNKAHQVLYLKASPTILRSKSMPLLPTAFIGLKNLQRELTNRNQNHHGC 123

Query: 76  FFRFRCSSTTVNPFFTDIDLSNEESKRRLFNRLLYRSKQRGFLELDLVLGKWVEDHINSL 135
           F     SST+ NP   DIDLSNE+SKR+LFNRLLYRSKQRGFLELDL+LGKWVEDHI+SL
Sbjct: 124 FSSVHFSSTSTNP---DIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSL 183

Query: 136 DADGIRALIKVLDLENPDLWKWLTGQEQPPEAVKTNPVFTDVQEKVMNNLNKHASPETRT 195
           DADGIRALI VLDLENPDLWKWLTGQEQPPEA+KTNPVFT V+EKV++NLNKHASPETRT
Sbjct: 184 DADGIRALINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRT 243

Query: 196 PPGQQWVRGWDDFKRGRDGPITGNQ 221
           PPGQQWVRGWDDFK+GRDGPITGNQ
Sbjct: 244 PPGQQWVRGWDDFKKGRDGPITGNQ 265

[Close]
BLAST of Cp4.1LG01g16830 vs. TrEMBL
Match: A0A061G020_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_014776 PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 8.1e-60
Identity = 127/202 (62.87%), Postives = 146/202 (72.28%), Query Frame = 1 

Query: 20  MATFRRAVLKAHQVLYLKPSSTVFRSKSMTLLPTAYILLENLQGRLPNRNQNQHGSFFRF 79
           MAT RRA+L AH++L    SSTV    ++ + P                   Q+G   RF
Sbjct: 1   MATLRRALLNAHRILN---SSTVPSRTTIVIRP-------------------QYGWVSRF 60

Query: 80  RCSSTTV-NPFFTDIDLSNEESKRRLFNRLLYRSKQRGFLELDLVLGKWVEDHINSLDAD 139
             SST + N    DIDLS+EESKRRLFNRLLYRSKQRGFLELDLVLGKWVE+HI S+D +
Sbjct: 61  --SSTNISNTQPLDIDLSSEESKRRLFNRLLYRSKQRGFLELDLVLGKWVEEHIYSMDEN 120

Query: 140 GIRALIKVLDLENPDLWKWLTGQEQPPEAVKTNPVFTDVQEKVMNNLNKHASPETRTPPG 199
           GI+AL+ VLDLENPDLWKWLTGQEQPPE V  NPVF+ VQEKV+ NLN H++PETR  PG
Sbjct: 121 GIKALVHVLDLENPDLWKWLTGQEQPPETVSINPVFSTVQEKVLKNLNSHSAPETRATPG 178

Query: 200 QQWVRGWDDFKRGRDGPITGNQ 221
           Q WVRGWDD K+GRD PITGNQ
Sbjct: 181 QPWVRGWDDIKKGRDSPITGNQ 178

[Close]
BLAST of Cp4.1LG01g16830 vs. TrEMBL
Match: V4TAF7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032866mg PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 6.9e-59
Identity = 122/201 (60.70%), Postives = 146/201 (72.64%), Query Frame = 1 

Query: 20  MATFRRAVLKAHQVLYLKPSSTVFRSKSMTLLPTAYILLENLQGRLPNRNQNQHGSFFRF 79
           MA+ RRAV+  H++L  + S+   RS   +  P A    E L                ++
Sbjct: 1   MASLRRAVINVHRIL--RSSAVANRSSIASASPAASF--ETLLRP-------------QY 60

Query: 80  RCSSTTVNPFFTDIDLSNEESKRRLFNRLLYRSKQRGFLELDLVLGKWVEDHINSLDADG 139
           R  S T      DIDLSNEE K+RLFNRLLYRSKQRGFLELDLVLGKWVE+HI+S+D +G
Sbjct: 61  RWVSNTTQSL--DIDLSNEEKKKRLFNRLLYRSKQRGFLELDLVLGKWVEEHIHSMDKNG 120

Query: 140 IRALIKVLDLENPDLWKWLTGQEQPPEAVKTNPVFTDVQEKVMNNLNKHASPETRTPPGQ 199
           I+AL+ VL+LENPDLWKWLTGQEQPPEAVKTNPVF+ +  KVMNNLN +ASPETR+ PGQ
Sbjct: 121 IKALVDVLNLENPDLWKWLTGQEQPPEAVKTNPVFSALHNKVMNNLNSYASPETRSEPGQ 180

Query: 200 QWVRGWDDFKRGRDGPITGNQ 221
            WVRGWDDFK+GRD P++GNQ
Sbjct: 181 PWVRGWDDFKKGRDSPLSGNQ 182

[Close]
BLAST of Cp4.1LG01g16830 vs. TrEMBL
Match: A0A0G4AMY2_9ROSI (Ankyrin repeat family protein OS=Monsonia emarginata PE=2 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 9.0e-59
Identity = 122/201 (60.70%), Postives = 145/201 (72.14%), Query Frame = 1 

Query: 20  MATFRRAVLKAHQVLYLKPSSTVFRSKSMTLLPTAYILLENLQGRLPNRNQNQHGSFFRF 79
           MA+ RRA++ A+++L           KS T  P    +  +L  +    ++ QHG   RF
Sbjct: 1   MASLRRALISANRIL-----------KSTTASPNRIHISPSLSSQSHTFSRPQHGWVSRF 60

Query: 80  RCSSTTVNPFFTDIDLSNEESKRRLFNRLLYRSKQRGFLELDLVLGKWVEDHINSLDADG 139
              STT  P   DIDLS+EESKRRLFNRLLYRSKQRGFLELDLVLGKWVE+H+ S+D +G
Sbjct: 61  ---STTAQPM--DIDLSSEESKRRLFNRLLYRSKQRGFLELDLVLGKWVEEHVYSMDENG 120

Query: 140 IRALIKVLDLENPDLWKWLTGQEQPPEAVKTNPVFTDVQEKVMNNLNKHASPETRTPPGQ 199
           I+AL+ VLDLENPDLWKWLTGQE  PE V  NPVFT + +KVM+NL+ HASPETR   GQ
Sbjct: 121 IKALVDVLDLENPDLWKWLTGQEPAPEQVNGNPVFTALHKKVMSNLDNHASPETRAVAGQ 180

Query: 200 QWVRGWDDFKRGRDGPITGNQ 221
            WVRGWDDFK+GRD PITGNQ
Sbjct: 181 PWVRGWDDFKKGRDSPITGNQ 185

[Close]
BLAST of Cp4.1LG01g16830 vs. TrEMBL
Match: A0A067F365_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g039261mg PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 1.5e-58
Identity = 121/201 (60.20%), Postives = 146/201 (72.64%), Query Frame = 1 

Query: 20  MATFRRAVLKAHQVLYLKPSSTVFRSKSMTLLPTAYILLENLQGRLPNRNQNQHGSFFRF 79
           MA+ RRAV+  H++L  + S+   RS   +  P A    E L                ++
Sbjct: 1   MASLRRAVINVHRIL--RSSAVANRSSIASASPAASF--ETLLRP-------------QY 60

Query: 80  RCSSTTVNPFFTDIDLSNEESKRRLFNRLLYRSKQRGFLELDLVLGKWVEDHINSLDADG 139
           R  S T      DIDLSN+E K+RLFNRLLYRSKQRGFLELDLVLGKWVE+HI+S+D +G
Sbjct: 61  RWVSNTTQSL--DIDLSNDEKKKRLFNRLLYRSKQRGFLELDLVLGKWVEEHIHSMDENG 120

Query: 140 IRALIKVLDLENPDLWKWLTGQEQPPEAVKTNPVFTDVQEKVMNNLNKHASPETRTPPGQ 199
           I+AL+ VL+LENPDLWKWLTGQEQPPEAVKTNPVF+ +  KVMNNLN +ASPETR+ PGQ
Sbjct: 121 IKALVDVLNLENPDLWKWLTGQEQPPEAVKTNPVFSALHNKVMNNLNSYASPETRSEPGQ 180

Query: 200 QWVRGWDDFKRGRDGPITGNQ 221
            WVRGWDDFK+GRD P++GNQ
Sbjct: 181 PWVRGWDDFKKGRDSPLSGNQ 182

[Close]
BLAST of Cp4.1LG01g16830 vs. TAIR10
Match: AT5G51040.3 (AT5G51040.3 unknown protein)

HSP 1 Score: 215.7 bits (548), Expect = 2.9e-56
Identity = 119/210 (56.67%), Postives = 149/210 (70.95%), Query Frame = 1 

Query: 20  MATFRRAVLKAHQVLYLKPSSTVFRSKSMTLLPTAYILLENLQGRLPNRNQNQHGSFFRF 79
           MAT R+A++  H+++  + ++ V RS   +++P A     N    +  RN    G+  RF
Sbjct: 1   MAT-RKALINVHRII--RSTAVVGRS---SIIPAA----ANRSYPIIFRNGVDLGA--RF 60

Query: 80  RCSSTTVNPFFTDIDLSNEESKRRLFNRLLYRSKQRGFLELDLVLGKWVEDHINSLDADG 139
            C +T     F DIDLSNEE+KRR  NRLLYRSKQRGFLELDLVLG WVE+++NS+D +G
Sbjct: 61  FCENTASAQNF-DIDLSNEENKRRTINRLLYRSKQRGFLELDLVLGNWVEENVNSMDENG 120

Query: 140 IRALIKVLDL---------ENPDLWKWLTGQEQPPEAVKTNPVFTDVQEKVMNNLNKHAS 199
           +++LI VL+L         ENPDLWKWLT QEQPPEAV +NPVF+ + EKVM NLNKHA+
Sbjct: 121 VKSLIHVLNLVESEATKLLENPDLWKWLTEQEQPPEAVSSNPVFSALHEKVMKNLNKHAA 180

Query: 200 PETRTPPGQQWVRGWDDFKRGRDGPITGNQ 221
           PETR   GQ WVRGWDDFKRGRD PI+GNQ
Sbjct: 181 PETRAAAGQPWVRGWDDFKRGRDAPISGNQ 197

[Close]
BLAST of Cp4.1LG01g16830 vs. NCBI nr
Match: gi|700206113|gb|KGN61232.1| (hypothetical protein Csa_2G072460 [Cucumis sativus])

HSP 1 Score: 336.3 bits (861), Expect = 4.1e-89
Identity = 165/205 (80.49%), Postives = 181/205 (88.29%), Query Frame = 1 

Query: 16  FKTRMATFRRAVLKAHQVLYLKPSSTVFRSKSMTLLPTAYILLENLQGRLPNRNQNQHGS 75
           F+ +MATF RA+ KAHQVLYLK S T+ RSKSM LLPTA+I L+NLQ  L NRNQN HG 
Sbjct: 64  FERQMATFIRALNKAHQVLYLKASPTILRSKSMPLLPTAFIGLKNLQRELTNRNQNHHGC 123

Query: 76  FFRFRCSSTTVNPFFTDIDLSNEESKRRLFNRLLYRSKQRGFLELDLVLGKWVEDHINSL 135
           F     SST+ NP   DIDLSNE+SKR+LFNRLLYRSKQRGFLELDL+LGKWVEDHI+SL
Sbjct: 124 FSSVHFSSTSTNP---DIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSL 183

Query: 136 DADGIRALIKVLDLENPDLWKWLTGQEQPPEAVKTNPVFTDVQEKVMNNLNKHASPETRT 195
           DADGIRALI VLDLENPDLWKWLTGQEQPPEA+KTNPVFT V+EKV++NLNKHASPETRT
Sbjct: 184 DADGIRALINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRT 243

Query: 196 PPGQQWVRGWDDFKRGRDGPITGNQ 221
           PPGQQWVRGWDDFK+GRDGPITGNQ
Sbjct: 244 PPGQQWVRGWDDFKKGRDGPITGNQ 265

[Close]
BLAST of Cp4.1LG01g16830 vs. NCBI nr
Match: gi|449470271|ref|XP_004152841.1| (PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Cucumis sativus])

HSP 1 Score: 334.0 bits (855), Expect = 2.0e-88
Identity = 164/201 (81.59%), Postives = 178/201 (88.56%), Query Frame = 1 

Query: 20  MATFRRAVLKAHQVLYLKPSSTVFRSKSMTLLPTAYILLENLQGRLPNRNQNQHGSFFRF 79
           MATF RA+ KAHQVLYLK S T+ RSKSM LLPTA+I L+NLQ  L NRNQN HG F   
Sbjct: 1   MATFIRALNKAHQVLYLKASPTILRSKSMPLLPTAFIGLKNLQRELTNRNQNHHGCFSSV 60

Query: 80  RCSSTTVNPFFTDIDLSNEESKRRLFNRLLYRSKQRGFLELDLVLGKWVEDHINSLDADG 139
             SST+ NP   DIDLSNE+SKR+LFNRLLYRSKQRGFLELDL+LGKWVEDHI+SLDADG
Sbjct: 61  HFSSTSTNP---DIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADG 120

Query: 140 IRALIKVLDLENPDLWKWLTGQEQPPEAVKTNPVFTDVQEKVMNNLNKHASPETRTPPGQ 199
           IRALI VLDLENPDLWKWLTGQEQPPEA+KTNPVFT V+EKV++NLNKHASPETRTPPGQ
Sbjct: 121 IRALINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRTPPGQ 180

Query: 200 QWVRGWDDFKRGRDGPITGNQ 221
           QWVRGWDDFK+GRDGPITGNQ
Sbjct: 181 QWVRGWDDFKKGRDGPITGNQ 198

[Close]
BLAST of Cp4.1LG01g16830 vs. NCBI nr
Match: gi|659082578|ref|XP_008441916.1| (PREDICTED: uncharacterized protein LOC103485912 [Cucumis melo])

HSP 1 Score: 331.6 bits (849), Expect = 1.0e-87
Identity = 162/202 (80.20%), Postives = 176/202 (87.13%), Query Frame = 1 

Query: 19  RMATFRRAVLKAHQVLYLKPSSTVFRSKSMTLLPTAYILLENLQGRLPNRNQNQHGSFFR 78
           +MATF RA+ KAHQVLYLK S T+ RSK M  LP+ +I LENLQ +L NRNQN HG  F 
Sbjct: 2   QMATFIRALSKAHQVLYLKASPTILRSKLMPFLPSVFIGLENLQSQLTNRNQNHHGCSFS 61

Query: 79  FRCSSTTVNPFFTDIDLSNEESKRRLFNRLLYRSKQRGFLELDLVLGKWVEDHINSLDAD 138
              SST+ NP   DIDLSNE+SKR+LFNRLLYRSKQRGFLELDL+LGKWVEDHI+SLDAD
Sbjct: 62  LHFSSTSTNP---DIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDAD 121

Query: 139 GIRALIKVLDLENPDLWKWLTGQEQPPEAVKTNPVFTDVQEKVMNNLNKHASPETRTPPG 198
           GIR LI VLDLENPDLWKWLTGQEQPPEA+KTNPVFT V+EKVMNNLNKHASPETRTPPG
Sbjct: 122 GIRDLINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVMNNLNKHASPETRTPPG 181

Query: 199 QQWVRGWDDFKRGRDGPITGNQ 221
           QQWVRGWDDFK+GRDGPITGNQ
Sbjct: 182 QQWVRGWDDFKKGRDGPITGNQ 200

[Close]
BLAST of Cp4.1LG01g16830 vs. NCBI nr
Match: gi|590670847|ref|XP_007038172.1| (Uncharacterized protein TCM_014776 [Theobroma cacao])

HSP 1 Score: 238.4 bits (607), Expect = 1.2e-59
Identity = 127/202 (62.87%), Postives = 146/202 (72.28%), Query Frame = 1 

Query: 20  MATFRRAVLKAHQVLYLKPSSTVFRSKSMTLLPTAYILLENLQGRLPNRNQNQHGSFFRF 79
           MAT RRA+L AH++L    SSTV    ++ + P                   Q+G   RF
Sbjct: 1   MATLRRALLNAHRILN---SSTVPSRTTIVIRP-------------------QYGWVSRF 60

Query: 80  RCSSTTV-NPFFTDIDLSNEESKRRLFNRLLYRSKQRGFLELDLVLGKWVEDHINSLDAD 139
             SST + N    DIDLS+EESKRRLFNRLLYRSKQRGFLELDLVLGKWVE+HI S+D +
Sbjct: 61  --SSTNISNTQPLDIDLSSEESKRRLFNRLLYRSKQRGFLELDLVLGKWVEEHIYSMDEN 120

Query: 140 GIRALIKVLDLENPDLWKWLTGQEQPPEAVKTNPVFTDVQEKVMNNLNKHASPETRTPPG 199
           GI+AL+ VLDLENPDLWKWLTGQEQPPE V  NPVF+ VQEKV+ NLN H++PETR  PG
Sbjct: 121 GIKALVHVLDLENPDLWKWLTGQEQPPETVSINPVFSTVQEKVLKNLNSHSAPETRATPG 178

Query: 200 QQWVRGWDDFKRGRDGPITGNQ 221
           Q WVRGWDD K+GRD PITGNQ
Sbjct: 181 QPWVRGWDDIKKGRDSPITGNQ 178

[Close]
BLAST of Cp4.1LG01g16830 vs. NCBI nr
Match: gi|567888920|ref|XP_006436982.1| (hypothetical protein CICLE_v10032866mg [Citrus clementina])

HSP 1 Score: 235.3 bits (599), Expect = 9.9e-59
Identity = 122/201 (60.70%), Postives = 146/201 (72.64%), Query Frame = 1 

Query: 20  MATFRRAVLKAHQVLYLKPSSTVFRSKSMTLLPTAYILLENLQGRLPNRNQNQHGSFFRF 79
           MA+ RRAV+  H++L  + S+   RS   +  P A    E L                ++
Sbjct: 1   MASLRRAVINVHRIL--RSSAVANRSSIASASPAASF--ETLLRP-------------QY 60

Query: 80  RCSSTTVNPFFTDIDLSNEESKRRLFNRLLYRSKQRGFLELDLVLGKWVEDHINSLDADG 139
           R  S T      DIDLSNEE K+RLFNRLLYRSKQRGFLELDLVLGKWVE+HI+S+D +G
Sbjct: 61  RWVSNTTQSL--DIDLSNEEKKKRLFNRLLYRSKQRGFLELDLVLGKWVEEHIHSMDKNG 120

Query: 140 IRALIKVLDLENPDLWKWLTGQEQPPEAVKTNPVFTDVQEKVMNNLNKHASPETRTPPGQ 199
           I+AL+ VL+LENPDLWKWLTGQEQPPEAVKTNPVF+ +  KVMNNLN +ASPETR+ PGQ
Sbjct: 121 IKALVDVLNLENPDLWKWLTGQEQPPEAVKTNPVFSALHNKVMNNLNSYASPETRSEPGQ 180

Query: 200 QWVRGWDDFKRGRDGPITGNQ 221
            WVRGWDDFK+GRD P++GNQ
Sbjct: 181 PWVRGWDDFKKGRDSPLSGNQ 182

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g16830 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SDAF2_ARATH2.4e-5759.20Succinate dehydrogenase assembly factor 2, mitochondrial OS=Arabidopsis thaliana... [more]
SDHF2_CRYNB1.5e-0629.41Succinate dehydrogenase assembly factor 2, mitochondrial OS=Cryptococcus neoform... [more]
SDHF2_CRYNJ1.5e-0629.41Succinate dehydrogenase assembly factor 2, mitochondrial OS=Cryptococcus neoform... [more]
SDHF2_SCHPO2.0e-0629.55Succinate dehydrogenase assembly factor 2, mitochondrial OS=Schizosaccharomyces ... [more]
SDHF2_SCHJY2.6e-0628.92Succinate dehydrogenase assembly factor 2, mitochondrial OS=Schizosaccharomyces ... [more]
BLAST of Cp4.1LG01g16830 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LKF9_CUCSA2.9e-8980.49Uncharacterized protein OS=Cucumis sativus GN=Csa_2G072460 PE=4 SV=1[more]
A0A061G020_THECC8.1e-6062.87Uncharacterized protein OS=Theobroma cacao GN=TCM_014776 PE=4 SV=1[more]
V4TAF7_9ROSI6.9e-5960.70Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032866mg PE=4 SV=1[more]
A0A0G4AMY2_9ROSI9.0e-5960.70Ankyrin repeat family protein OS=Monsonia emarginata PE=2 SV=1[more]
A0A067F365_CITSI1.5e-5860.20Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g039261mg PE=4 SV=1[more]
BLAST of Cp4.1LG01g16830 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G51040.32.9e-5656.67 unknown protein[more]
BLAST of Cp4.1LG01g16830 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700206113|gb|KGN61232.1|4.1e-8980.49hypothetical protein Csa_2G072460 [Cucumis sativus][more]
gi|449470271|ref|XP_004152841.1|2.0e-8881.59PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Cucumis sat... [more]
gi|659082578|ref|XP_008441916.1|1.0e-8780.20PREDICTED: uncharacterized protein LOC103485912 [Cucumis melo][more]
gi|590670847|ref|XP_007038172.1|1.2e-5962.87Uncharacterized protein TCM_014776 [Theobroma cacao][more]
gi|567888920|ref|XP_006436982.1|9.9e-5960.70hypothetical protein CICLE_v10032866mg [Citrus clementina][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005631SDH
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g16830.1Cp4.1LG01g16830.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005631Flavinator of succinate dehydrogenaseGENE3DG3DSA:1.10.150.250coord: 99..186
score: 6.1
IPR005631Flavinator of succinate dehydrogenasePFAMPF03937Sdh5coord: 106..175
score: 8.9
IPR005631Flavinator of succinate dehydrogenaseunknownSSF109910YgfY-likecoord: 106..171
score: 3.79
NoneNo IPR availablePANTHERPTHR12469PROTEIN EMI5 HOMOLOG, MITOCHONDRIALcoord: 93..201
score: 1.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g16830CmaCh04G019350Cucurbita maxima (Rimu)cmacpeB732
Cp4.1LG01g16830CmoCh04G020520Cucurbita moschata (Rifu)cmocpeB686
Cp4.1LG01g16830Cla016944Watermelon (97103) v1cpewmB455
Cp4.1LG01g16830ClCG11G000550Watermelon (Charleston Gray)cpewcgB365
Cp4.1LG01g16830Lsi11G000550Bottle gourd (USVL1VR-Ls)cpelsiB319
Cp4.1LG01g16830Bhi07G000005Wax gourdcpewgoB0559
Cp4.1LG01g16830Carg24967Silver-seed gourdcarcpeB1026
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g16830Cucurbita maxima (Rimu)cmacpeB720
Cp4.1LG01g16830Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g16830Watermelon (Charleston Gray)cpewcgB369