CmaCh04G019350 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh04G019350
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionSuccinate dehydrogenase assembly factor 2, mitochondrial
LocationCma_Chr04 : 10527034 .. 10530374 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGACGTTCAGAAGGGCTTTAGTCAAAGCTCATGAAGTTCTGTACCTGAAACCCTCCTCCACCGTTTTCAGAAGCAAATCGATGCCCCTTTTGCCTAGCGCTTATATATTGTTGGAGAATCTACAAGGGCGATTACCAAATCACAATCAGAATCAACATGGTTGTTTCTTTAGTTTTCGTTGCTCTTCCACGAGTGTAAATCCTTTGTTCACAGATATCGATCTCTCAAATGAAGAGAGCAAGAGGCGTTTGTTCAATAGGTTCAGTCTCACTTCCTTTGCATCATTAACTTTCATACCCCCCTTGCTTTCTTTCTCTTAATTTTTGGCAATTTTGTTTCGATTGACAAGGTTTTTCGGTTGTTGGATTCTACAGGTTGCTGTACCGGAGCAAACAACGGGGGTTTTTGGAATTGGATTTGGTACTTGGAAAATGGGTAGAAGATCACATCAATTCCTTGGATGCAGATGGTATTAGTGCTCTAATTAAAGTTCTTGACCTGGTAATCTAGTCTTATGCCCATATTTTTTAGTGATTTTCTATGTTTTGTGTTCTAGCCCTAGTTAGTTTTAATCCATAGCTGGGTGGAGGCCGGCCTTAGTGCCACATGGAATGTTTCATCTTTTTTCGTCATGTATTTGCCCAAATTTTGCACCACGATTTTCTATGTCACCTTCTCATCAATGAGGGCAGATTGATAGTGATGGTGCTGGTCAATCTTCATCCCATTCTTATCCCTCCTCGTGTGGCGGCATTCCGAGCTTGAATGTAGCTCTGAGAAATGAGACAAGAAAGAAAACAATAACGAATCCACTTTTGTTATTATGGAGTTGATTTGCACCTGCATAAAAATTTCAGGCCAAGACAAGTTCAAGGTTTTTATGAGCCACATTTGGACACAATTGTTCAAACGATGAGTCACTGAACGGTAGAAAAGCACAGCATATGATGCAAACATGCAAAAAACCGGAGGAGGATGTGTTGTGGCATATCTTTACCGCTGAAAAGATGATGACATGGGCACGTTGGGTTTCTCAAGCCAAATTTTTGTATAACATGGGAGGGTACTAGTGAGGAATATATTGGAAATATTAGTAAGATAATAGTAAGGGGTTAAGTGGTAATTAGTTGGATGAAGGGGGGTTTGGGTTATAAATAAAGAGGACTCGAAGTTTCTGGGAGGGTAAATCATTTTGGGGAGTGTCCATTTTGGGACTTGGGAAAGAGACAGCCCTCTGAAATATTTTCATTGATATTGCAACATAGTTATAGTTATATATCTATTTTCTTTTGTGATCTTGTGTTCAGGTACCTAATGAATTGGTATTAGAGCACGTTCATCTTGGAGTTGAAAAATATGACTAAAAAGGGATTAGAAGAGAGGGTGGAAGCTACTGGAAGGACATTGCCGAGCTTAAAGGCATGCTGCAAACAATGGCTCAAAGGACTGAGTAGTTTGCAATGGAAATACATGAGAATTCAAGTTCGACATGGGTGTTTGTGGTGATTATGTCGAGCCCCACAAAAGTAGTAAATGCTAGAGGAATGATGAATTTAAAATCTCTATAGTACCGGAGGGAAGGGAATCTATTAAGACAAGAAGTTATTGGTGGAATCGGAGATGATGGGGAATTCATGAGGCAGATGAAGAAGAAGCCTAGTGTAACACTTGAGTAAAGGAGGGGTATTGAGTAAAGGAGGGGTATGAATGACTGATACCACATCCAAAGGAGAACAATCTTGAGAATAGGATGGTTAAGAAAAGGTTAAAAAACTGATAGTAACTTCATAATTAAGCGTGGTTTGCTTAGAGCAATTCTATATTGGGTGATCTACTAGGACTTTTCGTATATGTAAGTGAGGACAAAACATGTTGGAAGGACTTTTGTTAGTTTGTGGGGATAGCCTTCACTTTTGAGGAGTAAGTAACATGACCATGTCATAGAGGATCTAAGGGTACTAGAGCCAAAATGTGCCAAATCCGGATTCCAAATCTTAATCCATATGAAAAGTGGAGAGAAGAAGTGACAAGGATAGAATCTAAAGAGTTTGGCAAGTTTATGGAGTAAGAAGGTAGGCGATCAAGAAGCAATGGAGGAAAGAAGAAAGATATAGCCGATGAGAAGGTGAGGTGGGTAACAGATGAAGAAACGATGAAGTAAGGACTTGTTAGTGGTAACCGGTGGTGGAAGAAGCAGAAGGACAAAAGATTTGCAAATAATTAAAAAAAATGAACAACCTTAACGACTCGACTCGACCCAACCAAAAATAGAGGGTTGGATTAGATTGCGAAGTTTGGATCCATTCGGGTCATCACTTTTGGGTTGGTCCAATAATTTTTCCCAACCCAACCTTACCTATGCAGACTCCTACTCATTTCTATCCCCTTGGCCAGCTATTCTAGGGCCTTCATGGCACTAGTCCACTAACTATTAAAATCAAGGGTAACCGCCAATGCCTGGTGACAAAGGGAATGGTGGAGGAGATAGTTTCAATAAGTGTGAAAGTTACAACAATGGGTAGTAAAATAGTTAGTGGGGAAGGGTTTGAGTTTAGTGTTCCTTACCACCAAAATAGGTGATTTCAGTTCAGTCCATCTGCGGAAACTTGGTATTTGTGATTTCAGTTCCTCATTTTTTTTCTTTTAAATCTATTATAAATGATTTTGAGGACTACTTTTTTGGATACTGCTTATTTCTTTTGCAAGTTTCTGTATATGTGTTCTTCTGATGTTCAGGAAAATCCAGATCTATGGAAGTGGTTAACTGGCCAAGAGCAACCCCCTAAAGCCGTGAAGACAAATCCTGTGAGCATCCAAATTAGTGTTTCCCTTTTTATGTTTGGACTAAAAAATATGTGATCTTAGAATTAGAGCATCTATTTGTAGGTATTTACTGATGTGCAAGAGAAGGTGATGAACAATCTCAACAAACATGCCTCACCCGAGACACGAACACCGCCTGGGCAACAATGGGTAAGGGGTTGGGATGATTTCAAGAGAGGTCGGGATGGCCCCATAACAGGAAACCAGTAGTTCTGTCTTCCATTAAAGAATTTTATGTTATAATTAAGTACTAAAGTTTCTCAAACTTGTTTGTTACGAATGGTGGGCTGTGAATAAGTTTCCCATCAAGTCTGTCCCCTCTAAACCCTTGGGATCTATAGTGAAATAATGGCTGTTTTTTTCTTTCACATACATTCACCAAATAATATCATTTCCAAGTGCTTGACACCATGGCTAGCTTGCGTTTCTTTATAGTTTGTACTTGATGTAATAAGCTTTGTATTAATTTTATAGTTTGCATTGGTGTTACCACCTCCAATGCTCTACCCCATAA

mRNA sequence

ATGGCGACGTTCAGAAGGGCTTTAGTCAAAGCTCATGAAGTTCTGTACCTGAAACCCTCCTCCACCGTTTTCAGAAGCAAATCGATGCCCCTTTTGCCTAGCGCTTATATATTGTTGGAGAATCTACAAGGGCGATTACCAAATCACAATCAGAATCAACATGGTTGTTTCTTTAGTTTTCGTTGCTCTTCCACGAGTGTAAATCCTTTGTTCACAGATATCGATCTCTCAAATGAAGAGAGCAAGAGGCGTTTGTTCAATAGGTTGCTGTACCGGAGCAAACAACGGGGGTTTTTGGAATTGGATTTGGTACTTGGAAAATGGGTAGAAGATCACATCAATTCCTTGGATGCAGATGGTATTAGTGCTCTAATTAAAGTTCTTGACCTGGAAAATCCAGATCTATGGAAGTGGTTAACTGGCCAAGAGCAACCCCCTAAAGCCGTGAAGACAAATCCTGTATTTACTGATGTGCAAGAGAAGGTGATGAACAATCTCAACAAACATGCCTCACCCGAGACACGAACACCGCCTGGGCAACAATGGGTAAGGGGTTGGGATGATTTCAAGAGAGGTCGGGATGGCCCCATAACAGGAAACCAGTAGTTCTGTCTTCCATTAAAGAATTTTATGTTATAATTAAGTACTAAAGTTTCTCAAACTTGTTTGTTACGAATGGTGGGCTGTGAATAAGTTTCCCATCAAGTCTGTCCCCTCTAAACCCTTGGGATCTATAGTGAAATAATGGCTGTTTTTTTCTTTCACATACATTCACCAAATAATATCATTTCCAAGTGCTTGACACCATGGCTAGCTTGCGTTTCTTTATAGTTTGTACTTGATGTAATAAGCTTTGTATTAATTTTATAGTTTGCATTGGTGTTACCACCTCCAATGCTCTACCCCATAA

Coding sequence (CDS)

ATGGCGACGTTCAGAAGGGCTTTAGTCAAAGCTCATGAAGTTCTGTACCTGAAACCCTCCTCCACCGTTTTCAGAAGCAAATCGATGCCCCTTTTGCCTAGCGCTTATATATTGTTGGAGAATCTACAAGGGCGATTACCAAATCACAATCAGAATCAACATGGTTGTTTCTTTAGTTTTCGTTGCTCTTCCACGAGTGTAAATCCTTTGTTCACAGATATCGATCTCTCAAATGAAGAGAGCAAGAGGCGTTTGTTCAATAGGTTGCTGTACCGGAGCAAACAACGGGGGTTTTTGGAATTGGATTTGGTACTTGGAAAATGGGTAGAAGATCACATCAATTCCTTGGATGCAGATGGTATTAGTGCTCTAATTAAAGTTCTTGACCTGGAAAATCCAGATCTATGGAAGTGGTTAACTGGCCAAGAGCAACCCCCTAAAGCCGTGAAGACAAATCCTGTATTTACTGATGTGCAAGAGAAGGTGATGAACAATCTCAACAAACATGCCTCACCCGAGACACGAACACCGCCTGGGCAACAATGGGTAAGGGGTTGGGATGATTTCAAGAGAGGTCGGGATGGCCCCATAACAGGAAACCAGTAG

Protein sequence

MATFRRALVKAHEVLYLKPSSTVFRSKSMPLLPSAYILLENLQGRLPNHNQNQHGCFFSFRCSSTSVNPLFTDIDLSNEESKRRLFNRLLYRSKQRGFLELDLVLGKWVEDHINSLDADGISALIKVLDLENPDLWKWLTGQEQPPKAVKTNPVFTDVQEKVMNNLNKHASPETRTPPGQQWVRGWDDFKRGRDGPITGNQ
Homology
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BLAST of CmaCh04G019350 vs. Swiss-Prot
Match: SDAF2_ARATH (Succinate dehydrogenase assembly factor 2, mitochondrial OS=Arabidopsis thaliana GN=SDHAF2 PE=1 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 5.5e-56
Identity = 115/201 (57.21%), Postives = 142/201 (70.65%), Query Frame = 1 

Query: 1   MATFRRALVKAHEVLYLKPSSTVFRSKSMPLLPSAYILLENLQGRLPNHNQNQHGCFFSF 60
           MAT R+AL+  H ++  + ++ V RS  +P   +            P   +N       F
Sbjct: 1   MAT-RKALINVHRII--RSTAVVGRSSIIPAAANR---------SYPIIFRNGVDLGARF 60

Query: 61  RCSSTSVNPLFTDIDLSNEESKRRLFNRLLYRSKQRGFLELDLVLGKWVEDHINSLDADG 120
            C +T+    F DIDLSNEE+KRR  NRLLYRSKQRGFLELDLVLG WVE+++NS+D +G
Sbjct: 61  FCENTASAQNF-DIDLSNEENKRRTINRLLYRSKQRGFLELDLVLGNWVEENVNSMDENG 120

Query: 121 ISALIKVLDLENPDLWKWLTGQEQPPKAVKTNPVFTDVQEKVMNNLNKHASPETRTPPGQ 180
           + +LI VL+LENPDLWKWLT QEQPP+AV +NPVF+ + EKVM NLNKHA+PETR   GQ
Sbjct: 121 VKSLIHVLNLENPDLWKWLTEQEQPPEAVSSNPVFSALHEKVMKNLNKHAAPETRAAAGQ 180

Query: 181 QWVRGWDDFKRGRDGPITGNQ 202
            WVRGWDDFKRGRD PI+GNQ
Sbjct: 181 PWVRGWDDFKRGRDAPISGNQ 188

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BLAST of CmaCh04G019350 vs. Swiss-Prot
Match: SDHF2_CRYNB (Succinate dehydrogenase assembly factor 2, mitochondrial OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=CNBA4490 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 8.0e-07
Identity = 29/96 (30.21%), Postives = 52/96 (54.17%), Query Frame = 1 

Query: 69  PLFTDIDLSNEESKRRLFNRLLYRSKQRGFLELDLVLGKWVEDHINSLDADGISALIKVL 128
           PL   +D + E+ K  L  RL+Y++++RG LE DL+L  +  D + ++D + +    K+L
Sbjct: 63  PLPEPLDRTGEDEKT-LRARLIYQTRKRGTLETDLILSTFARDELPNMDFEEMKQFDKLL 122

Query: 129 DLENPDLWKWLTGQEQPPKAVKTNPVFTDVQEKVMN 165
           D  + D++ W   +  PP   K  P+   +Q+   N
Sbjct: 123 DEPDWDIFYWSVKKRDPPARWKGTPLLEKLQKHAKN 157

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BLAST of CmaCh04G019350 vs. Swiss-Prot
Match: SDHF2_CRYNJ (Succinate dehydrogenase assembly factor 2, mitochondrial OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=CNA04680 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 8.0e-07
Identity = 29/96 (30.21%), Postives = 52/96 (54.17%), Query Frame = 1 

Query: 69  PLFTDIDLSNEESKRRLFNRLLYRSKQRGFLELDLVLGKWVEDHINSLDADGISALIKVL 128
           PL   +D + E+ K  L  RL+Y++++RG LE DL+L  +  D + ++D + +    K+L
Sbjct: 63  PLPEPLDRTGEDEKT-LRARLIYQTRKRGTLETDLILSTFARDELPNMDFEEMKQFDKLL 122

Query: 129 DLENPDLWKWLTGQEQPPKAVKTNPVFTDVQEKVMN 165
           D  + D++ W   +  PP   K  P+   +Q+   N
Sbjct: 123 DEPDWDIFYWSVKKRDPPARWKGTPLLEKLQKHAKN 157

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BLAST of CmaCh04G019350 vs. TrEMBL
Match: A0A0A0LKF9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G072460 PE=4 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 2.0e-89
Identity = 164/201 (81.59%), Postives = 179/201 (89.05%), Query Frame = 1 

Query: 1   MATFRRALVKAHEVLYLKPSSTVFRSKSMPLLPSAYILLENLQGRLPNHNQNQHGCFFSF 60
           MATF RAL KAH+VLYLK S T+ RSKSMPLLP+A+I L+NLQ  L N NQN HGCF S 
Sbjct: 68  MATFIRALNKAHQVLYLKASPTILRSKSMPLLPTAFIGLKNLQRELTNRNQNHHGCFSSV 127

Query: 61  RCSSTSVNPLFTDIDLSNEESKRRLFNRLLYRSKQRGFLELDLVLGKWVEDHINSLDADG 120
             SSTS NP   DIDLSNE+SKR+LFNRLLYRSKQRGFLELDL+LGKWVEDHI+SLDADG
Sbjct: 128 HFSSTSTNP---DIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADG 187

Query: 121 ISALIKVLDLENPDLWKWLTGQEQPPKAVKTNPVFTDVQEKVMNNLNKHASPETRTPPGQ 180
           I ALI VLDLENPDLWKWLTGQEQPP+A+KTNPVFT V+EKV++NLNKHASPETRTPPGQ
Sbjct: 188 IRALINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRTPPGQ 247

Query: 181 QWVRGWDDFKRGRDGPITGNQ 202
           QWVRGWDDFK+GRDGPITGNQ
Sbjct: 248 QWVRGWDDFKKGRDGPITGNQ 265

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BLAST of CmaCh04G019350 vs. TrEMBL
Match: A0A061G020_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_014776 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 1.8e-58
Identity = 125/202 (61.88%), Postives = 144/202 (71.29%), Query Frame = 1 

Query: 1   MATFRRALVKAHEVLYLKPSSTVFRSKSMPLLPSAYILLENLQGRLPNHNQNQHGCFFSF 60
           MAT RRAL+ AH +L    SSTV    ++ + P                   Q+G    F
Sbjct: 1   MATLRRALLNAHRILN---SSTVPSRTTIVIRP-------------------QYGWVSRF 60

Query: 61  RCSSTSV-NPLFTDIDLSNEESKRRLFNRLLYRSKQRGFLELDLVLGKWVEDHINSLDAD 120
             SST++ N    DIDLS+EESKRRLFNRLLYRSKQRGFLELDLVLGKWVE+HI S+D +
Sbjct: 61  --SSTNISNTQPLDIDLSSEESKRRLFNRLLYRSKQRGFLELDLVLGKWVEEHIYSMDEN 120

Query: 121 GISALIKVLDLENPDLWKWLTGQEQPPKAVKTNPVFTDVQEKVMNNLNKHASPETRTPPG 180
           GI AL+ VLDLENPDLWKWLTGQEQPP+ V  NPVF+ VQEKV+ NLN H++PETR  PG
Sbjct: 121 GIKALVHVLDLENPDLWKWLTGQEQPPETVSINPVFSTVQEKVLKNLNSHSAPETRATPG 178

Query: 181 QQWVRGWDDFKRGRDGPITGNQ 202
           Q WVRGWDD K+GRD PITGNQ
Sbjct: 181 QPWVRGWDDIKKGRDSPITGNQ 178

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BLAST of CmaCh04G019350 vs. TrEMBL
Match: A0A068TQT2_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00022341001 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 7.0e-58
Identity = 118/201 (58.71%), Postives = 143/201 (71.14%), Query Frame = 1 

Query: 1   MATFRRALVKAHEVLYLKPSSTVFRSKSMPLLPSAYILLENLQGRLPNHNQNQHGCFFSF 60
           MA  RRAL+     +    + T   + +M    S++ +   + G LP        CF+S 
Sbjct: 1   MANLRRALLFTIPRILNSSNQTSIATSTM----SSHNIYRPILGSLP--------CFYSS 60

Query: 61  RCSSTSVNPLFTDIDLSNEESKRRLFNRLLYRSKQRGFLELDLVLGKWVEDHINSLDADG 120
             +         +IDLSNEESKRRLFNRLLYRS+QRGFLELDL+LG+WVEDHI+S+D +G
Sbjct: 61  NQA--------LNIDLSNEESKRRLFNRLLYRSRQRGFLELDLILGRWVEDHIHSMDENG 120

Query: 121 ISALIKVLDLENPDLWKWLTGQEQPPKAVKTNPVFTDVQEKVMNNLNKHASPETRTPPGQ 180
           I AL+ VLDLENPDLWKWLTGQ QPP+AV+ NPVF DVQ++V+NNLN HASPETR  PGQ
Sbjct: 121 IKALVHVLDLENPDLWKWLTGQGQPPEAVRMNPVFADVQKRVVNNLNSHASPETRATPGQ 180

Query: 181 QWVRGWDDFKRGRDGPITGNQ 202
            WVRGWDDFK+GRDGP  GNQ
Sbjct: 181 PWVRGWDDFKKGRDGPAVGNQ 181

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BLAST of CmaCh04G019350 vs. TrEMBL
Match: V4TAF7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032866mg PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 1.2e-57
Identity = 120/201 (59.70%), Postives = 144/201 (71.64%), Query Frame = 1 

Query: 1   MATFRRALVKAHEVLYLKPSSTVFRSKSMPLLPSAYILLENLQGRLPNHNQNQHGCFFSF 60
           MA+ RRA++  H +L  + S+   RS      P+A    E L                 +
Sbjct: 1   MASLRRAVINVHRIL--RSSAVANRSSIASASPAASF--ETLLRP-------------QY 60

Query: 61  RCSSTSVNPLFTDIDLSNEESKRRLFNRLLYRSKQRGFLELDLVLGKWVEDHINSLDADG 120
           R  S +   L  DIDLSNEE K+RLFNRLLYRSKQRGFLELDLVLGKWVE+HI+S+D +G
Sbjct: 61  RWVSNTTQSL--DIDLSNEEKKKRLFNRLLYRSKQRGFLELDLVLGKWVEEHIHSMDKNG 120

Query: 121 ISALIKVLDLENPDLWKWLTGQEQPPKAVKTNPVFTDVQEKVMNNLNKHASPETRTPPGQ 180
           I AL+ VL+LENPDLWKWLTGQEQPP+AVKTNPVF+ +  KVMNNLN +ASPETR+ PGQ
Sbjct: 121 IKALVDVLNLENPDLWKWLTGQEQPPEAVKTNPVFSALHNKVMNNLNSYASPETRSEPGQ 180

Query: 181 QWVRGWDDFKRGRDGPITGNQ 202
            WVRGWDDFK+GRD P++GNQ
Sbjct: 181 PWVRGWDDFKKGRDSPLSGNQ 182

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BLAST of CmaCh04G019350 vs. TrEMBL
Match: A0A0G4AMY2_9ROSI (Ankyrin repeat family protein OS=Monsonia emarginata PE=2 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 2.0e-57
Identity = 119/201 (59.20%), Postives = 143/201 (71.14%), Query Frame = 1 

Query: 1   MATFRRALVKAHEVLYLKPSSTVFRSKSMPLLPSAYILLENLQGRLPNHNQNQHGCFFSF 60
           MA+ RRAL+ A+ +L           KS    P+   +  +L  +    ++ QHG    F
Sbjct: 1   MASLRRALISANRIL-----------KSTTASPNRIHISPSLSSQSHTFSRPQHGWVSRF 60

Query: 61  RCSSTSVNPLFTDIDLSNEESKRRLFNRLLYRSKQRGFLELDLVLGKWVEDHINSLDADG 120
              ST+  P+  DIDLS+EESKRRLFNRLLYRSKQRGFLELDLVLGKWVE+H+ S+D +G
Sbjct: 61  ---STTAQPM--DIDLSSEESKRRLFNRLLYRSKQRGFLELDLVLGKWVEEHVYSMDENG 120

Query: 121 ISALIKVLDLENPDLWKWLTGQEQPPKAVKTNPVFTDVQEKVMNNLNKHASPETRTPPGQ 180
           I AL+ VLDLENPDLWKWLTGQE  P+ V  NPVFT + +KVM+NL+ HASPETR   GQ
Sbjct: 121 IKALVDVLDLENPDLWKWLTGQEPAPEQVNGNPVFTALHKKVMSNLDNHASPETRAVAGQ 180

Query: 181 QWVRGWDDFKRGRDGPITGNQ 202
            WVRGWDDFK+GRD PITGNQ
Sbjct: 181 PWVRGWDDFKKGRDSPITGNQ 185

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BLAST of CmaCh04G019350 vs. TAIR10
Match: AT5G51040.3 (AT5G51040.3 unknown protein)

HSP 1 Score: 211.1 bits (536), Expect = 6.4e-55
Identity = 115/210 (54.76%), Postives = 142/210 (67.62%), Query Frame = 1 

Query: 1   MATFRRALVKAHEVLYLKPSSTVFRSKSMPLLPSAYILLENLQGRLPNHNQNQHGCFFSF 60
           MAT R+AL+  H ++  + ++ V RS  +P   +            P   +N       F
Sbjct: 1   MAT-RKALINVHRII--RSTAVVGRSSIIPAAANR---------SYPIIFRNGVDLGARF 60

Query: 61  RCSSTSVNPLFTDIDLSNEESKRRLFNRLLYRSKQRGFLELDLVLGKWVEDHINSLDADG 120
            C +T+    F DIDLSNEE+KRR  NRLLYRSKQRGFLELDLVLG WVE+++NS+D +G
Sbjct: 61  FCENTASAQNF-DIDLSNEENKRRTINRLLYRSKQRGFLELDLVLGNWVEENVNSMDENG 120

Query: 121 ISALIKVLDL---------ENPDLWKWLTGQEQPPKAVKTNPVFTDVQEKVMNNLNKHAS 180
           + +LI VL+L         ENPDLWKWLT QEQPP+AV +NPVF+ + EKVM NLNKHA+
Sbjct: 121 VKSLIHVLNLVESEATKLLENPDLWKWLTEQEQPPEAVSSNPVFSALHEKVMKNLNKHAA 180

Query: 181 PETRTPPGQQWVRGWDDFKRGRDGPITGNQ 202
           PETR   GQ WVRGWDDFKRGRD PI+GNQ
Sbjct: 181 PETRAAAGQPWVRGWDDFKRGRDAPISGNQ 197

[Close]
BLAST of CmaCh04G019350 vs. NCBI nr
Match: gi|659082578|ref|XP_008441916.1| (PREDICTED: uncharacterized protein LOC103485912 [Cucumis melo])

HSP 1 Score: 337.0 bits (863), Expect = 2.2e-89
Identity = 164/201 (81.59%), Postives = 176/201 (87.56%), Query Frame = 1 

Query: 1   MATFRRALVKAHEVLYLKPSSTVFRSKSMPLLPSAYILLENLQGRLPNHNQNQHGCFFSF 60
           MATF RAL KAH+VLYLK S T+ RSK MP LPS +I LENLQ +L N NQN HGC FS 
Sbjct: 3   MATFIRALSKAHQVLYLKASPTILRSKLMPFLPSVFIGLENLQSQLTNRNQNHHGCSFSL 62

Query: 61  RCSSTSVNPLFTDIDLSNEESKRRLFNRLLYRSKQRGFLELDLVLGKWVEDHINSLDADG 120
             SSTS NP   DIDLSNE+SKR+LFNRLLYRSKQRGFLELDL+LGKWVEDHI+SLDADG
Sbjct: 63  HFSSTSTNP---DIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADG 122

Query: 121 ISALIKVLDLENPDLWKWLTGQEQPPKAVKTNPVFTDVQEKVMNNLNKHASPETRTPPGQ 180
           I  LI VLDLENPDLWKWLTGQEQPP+A+KTNPVFT V+EKVMNNLNKHASPETRTPPGQ
Sbjct: 123 IRDLINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVMNNLNKHASPETRTPPGQ 182

Query: 181 QWVRGWDDFKRGRDGPITGNQ 202
           QWVRGWDDFK+GRDGPITGNQ
Sbjct: 183 QWVRGWDDFKKGRDGPITGNQ 200

[Close]
BLAST of CmaCh04G019350 vs. NCBI nr
Match: gi|449470271|ref|XP_004152841.1| (PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Cucumis sativus])

HSP 1 Score: 336.7 bits (862), Expect = 2.9e-89
Identity = 164/201 (81.59%), Postives = 179/201 (89.05%), Query Frame = 1 

Query: 1   MATFRRALVKAHEVLYLKPSSTVFRSKSMPLLPSAYILLENLQGRLPNHNQNQHGCFFSF 60
           MATF RAL KAH+VLYLK S T+ RSKSMPLLP+A+I L+NLQ  L N NQN HGCF S 
Sbjct: 1   MATFIRALNKAHQVLYLKASPTILRSKSMPLLPTAFIGLKNLQRELTNRNQNHHGCFSSV 60

Query: 61  RCSSTSVNPLFTDIDLSNEESKRRLFNRLLYRSKQRGFLELDLVLGKWVEDHINSLDADG 120
             SSTS NP   DIDLSNE+SKR+LFNRLLYRSKQRGFLELDL+LGKWVEDHI+SLDADG
Sbjct: 61  HFSSTSTNP---DIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADG 120

Query: 121 ISALIKVLDLENPDLWKWLTGQEQPPKAVKTNPVFTDVQEKVMNNLNKHASPETRTPPGQ 180
           I ALI VLDLENPDLWKWLTGQEQPP+A+KTNPVFT V+EKV++NLNKHASPETRTPPGQ
Sbjct: 121 IRALINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRTPPGQ 180

Query: 181 QWVRGWDDFKRGRDGPITGNQ 202
           QWVRGWDDFK+GRDGPITGNQ
Sbjct: 181 QWVRGWDDFKKGRDGPITGNQ 198

[Close]
BLAST of CmaCh04G019350 vs. NCBI nr
Match: gi|700206113|gb|KGN61232.1| (hypothetical protein Csa_2G072460 [Cucumis sativus])

HSP 1 Score: 336.7 bits (862), Expect = 2.9e-89
Identity = 164/201 (81.59%), Postives = 179/201 (89.05%), Query Frame = 1 

Query: 1   MATFRRALVKAHEVLYLKPSSTVFRSKSMPLLPSAYILLENLQGRLPNHNQNQHGCFFSF 60
           MATF RAL KAH+VLYLK S T+ RSKSMPLLP+A+I L+NLQ  L N NQN HGCF S 
Sbjct: 68  MATFIRALNKAHQVLYLKASPTILRSKSMPLLPTAFIGLKNLQRELTNRNQNHHGCFSSV 127

Query: 61  RCSSTSVNPLFTDIDLSNEESKRRLFNRLLYRSKQRGFLELDLVLGKWVEDHINSLDADG 120
             SSTS NP   DIDLSNE+SKR+LFNRLLYRSKQRGFLELDL+LGKWVEDHI+SLDADG
Sbjct: 128 HFSSTSTNP---DIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADG 187

Query: 121 ISALIKVLDLENPDLWKWLTGQEQPPKAVKTNPVFTDVQEKVMNNLNKHASPETRTPPGQ 180
           I ALI VLDLENPDLWKWLTGQEQPP+A+KTNPVFT V+EKV++NLNKHASPETRTPPGQ
Sbjct: 188 IRALINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRTPPGQ 247

Query: 181 QWVRGWDDFKRGRDGPITGNQ 202
           QWVRGWDDFK+GRDGPITGNQ
Sbjct: 248 QWVRGWDDFKKGRDGPITGNQ 265

[Close]
BLAST of CmaCh04G019350 vs. NCBI nr
Match: gi|590670847|ref|XP_007038172.1| (Uncharacterized protein TCM_014776 [Theobroma cacao])

HSP 1 Score: 233.8 bits (595), Expect = 2.6e-58
Identity = 125/202 (61.88%), Postives = 144/202 (71.29%), Query Frame = 1 

Query: 1   MATFRRALVKAHEVLYLKPSSTVFRSKSMPLLPSAYILLENLQGRLPNHNQNQHGCFFSF 60
           MAT RRAL+ AH +L    SSTV    ++ + P                   Q+G    F
Sbjct: 1   MATLRRALLNAHRILN---SSTVPSRTTIVIRP-------------------QYGWVSRF 60

Query: 61  RCSSTSV-NPLFTDIDLSNEESKRRLFNRLLYRSKQRGFLELDLVLGKWVEDHINSLDAD 120
             SST++ N    DIDLS+EESKRRLFNRLLYRSKQRGFLELDLVLGKWVE+HI S+D +
Sbjct: 61  --SSTNISNTQPLDIDLSSEESKRRLFNRLLYRSKQRGFLELDLVLGKWVEEHIYSMDEN 120

Query: 121 GISALIKVLDLENPDLWKWLTGQEQPPKAVKTNPVFTDVQEKVMNNLNKHASPETRTPPG 180
           GI AL+ VLDLENPDLWKWLTGQEQPP+ V  NPVF+ VQEKV+ NLN H++PETR  PG
Sbjct: 121 GIKALVHVLDLENPDLWKWLTGQEQPPETVSINPVFSTVQEKVLKNLNSHSAPETRATPG 178

Query: 181 QQWVRGWDDFKRGRDGPITGNQ 202
           Q WVRGWDD K+GRD PITGNQ
Sbjct: 181 QPWVRGWDDIKKGRDSPITGNQ 178

[Close]
BLAST of CmaCh04G019350 vs. NCBI nr
Match: gi|661898327|emb|CDO98294.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 231.9 bits (590), Expect = 1.0e-57
Identity = 118/201 (58.71%), Postives = 143/201 (71.14%), Query Frame = 1 

Query: 1   MATFRRALVKAHEVLYLKPSSTVFRSKSMPLLPSAYILLENLQGRLPNHNQNQHGCFFSF 60
           MA  RRAL+     +    + T   + +M    S++ +   + G LP        CF+S 
Sbjct: 1   MANLRRALLFTIPRILNSSNQTSIATSTM----SSHNIYRPILGSLP--------CFYSS 60

Query: 61  RCSSTSVNPLFTDIDLSNEESKRRLFNRLLYRSKQRGFLELDLVLGKWVEDHINSLDADG 120
             +         +IDLSNEESKRRLFNRLLYRS+QRGFLELDL+LG+WVEDHI+S+D +G
Sbjct: 61  NQA--------LNIDLSNEESKRRLFNRLLYRSRQRGFLELDLILGRWVEDHIHSMDENG 120

Query: 121 ISALIKVLDLENPDLWKWLTGQEQPPKAVKTNPVFTDVQEKVMNNLNKHASPETRTPPGQ 180
           I AL+ VLDLENPDLWKWLTGQ QPP+AV+ NPVF DVQ++V+NNLN HASPETR  PGQ
Sbjct: 121 IKALVHVLDLENPDLWKWLTGQGQPPEAVRMNPVFADVQKRVVNNLNSHASPETRATPGQ 180

Query: 181 QWVRGWDDFKRGRDGPITGNQ 202
            WVRGWDDFK+GRDGP  GNQ
Sbjct: 181 PWVRGWDDFKKGRDGPAVGNQ 181

The following BLAST results are available for this feature:
BLAST of CmaCh04G019350 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SDAF2_ARATH5.5e-5657.21Succinate dehydrogenase assembly factor 2, mitochondrial OS=Arabidopsis thaliana... [more]
SDHF2_CRYNB8.0e-0730.21Succinate dehydrogenase assembly factor 2, mitochondrial OS=Cryptococcus neoform... [more]
SDHF2_CRYNJ8.0e-0730.21Succinate dehydrogenase assembly factor 2, mitochondrial OS=Cryptococcus neoform... [more]
BLAST of CmaCh04G019350 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LKF9_CUCSA2.0e-8981.59Uncharacterized protein OS=Cucumis sativus GN=Csa_2G072460 PE=4 SV=1[more]
A0A061G020_THECC1.8e-5861.88Uncharacterized protein OS=Theobroma cacao GN=TCM_014776 PE=4 SV=1[more]
A0A068TQT2_COFCA7.0e-5858.71Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00022341001 PE=4 SV=1[more]
V4TAF7_9ROSI1.2e-5759.70Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032866mg PE=4 SV=1[more]
A0A0G4AMY2_9ROSI2.0e-5759.20Ankyrin repeat family protein OS=Monsonia emarginata PE=2 SV=1[more]
BLAST of CmaCh04G019350 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G51040.36.4e-5554.76 unknown protein[more]
BLAST of CmaCh04G019350 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659082578|ref|XP_008441916.1|2.2e-8981.59PREDICTED: uncharacterized protein LOC103485912 [Cucumis melo][more]
gi|449470271|ref|XP_004152841.1|2.9e-8981.59PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Cucumis sat... [more]
gi|700206113|gb|KGN61232.1|2.9e-8981.59hypothetical protein Csa_2G072460 [Cucumis sativus][more]
gi|590670847|ref|XP_007038172.1|2.6e-5861.88Uncharacterized protein TCM_014776 [Theobroma cacao][more]
gi|661898327|emb|CDO98294.1|1.0e-5758.71unnamed protein product [Coffea canephora][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005631SDH
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G019350.1CmaCh04G019350.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005631Flavinator of succinate dehydrogenaseGENE3DG3DSA:1.10.150.250coord: 80..167
score: 1.3
IPR005631Flavinator of succinate dehydrogenasePFAMPF03937Sdh5coord: 87..156
score: 2.2
IPR005631Flavinator of succinate dehydrogenaseunknownSSF109910YgfY-likecoord: 87..152
score: 5.36
NoneNo IPR availablePANTHERPTHR12469PROTEIN EMI5 HOMOLOG, MITOCHONDRIALcoord: 74..182
score: 5.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh04G019350Cla016944Watermelon (97103) v1cmawmB739
CmaCh04G019350ClCG11G000550Watermelon (Charleston Gray)cmawcgB622
CmaCh04G019350CmoCh04G020520Cucurbita moschata (Rifu)cmacmoB728
CmaCh04G019350Lsi11G000550Bottle gourd (USVL1VR-Ls)cmalsiB635
CmaCh04G019350Cp4.1LG01g16830Cucurbita pepo (Zucchini)cmacpeB732
CmaCh04G019350Cla97C11G206870Watermelon (97103) v2cmawmbB726
CmaCh04G019350Bhi07G000005Wax gourdcmawgoB0904
CmaCh04G019350Carg24967Silver-seed gourdcarcmaB1020
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh04G019350Cucurbita pepo (Zucchini)cmacpeB720