Cla016944 (gene) Watermelon (97103) v1

Overview
NameCla016944
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionSuccinate dehydrogenase assembly factor 2, mitochondrial (AHRD V1 *--- SDHF2_CAEBR); contains Interpro domain(s) IPR005631 Protein of unknown function DUF339
LocationChr11 : 26433174 .. 26435315 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAACTTTCACAAGGGCTCTAAAAAAAGCTCATCAAGTTTTATACTTGAAAGCCTCCTCCACCATTTTGAGAAGCAAATTGATGCCCCTTTTGCCTAGCGCTTTGATTGGGTTGGAAAATCTACAAAGCCAACTAACAAATCACAATCAGAATCACCATGCTTGTTTCTTTAGTTTTCGTTGCTCTTCAACAAGTACAAATCCTCACATCGATCTCTCAAATGAAGATAGCAAGAGGCATTTATTCAATAGGTTCGTTCTTGCTTTATTTTGTTTATTATCTTTCACATCCCTCTCGCTCTCTTTCTCTCAATTATTGGCACTTTTTTTTTTATTGACAAGTTTTTTTCTTTGTTTTTTTTTTGGTTGTTGGACTTAACAGGTTGTTGTACCGGAGCAAACAACGAGGGTTTTTGGAATTGGATTTGGTACTTGGGAAATGGGTAGAGGATCACATCAATTCATTAGATGCAGATGGTATTCGAGCTCTAATTAATGTTCTTGACCTGGTAATTTAGTCTTCTACCATATTTGGAGTGATTTTCTATGCTTTGTGATGTAGCCTTGGTTTTAAATCATGGCTTGTTGTGGGGGGTGGGGGAGAATAGGCCGGGTGGTGTGGAGCTATGCCCTTAGTGTCACATGGAATGTTTTATCTCTGTTCTTTATGTTCGTTGTTCAGATTTTTTCTTTGGCGGTTTTTCTATTTCGTAACATAGCTCTTTCAGTTTTTTCTTTTTATTCTATGTTCAAAATTTTGGTTTTCAGGAGTTGTCTTTGGCCCGGTTTTTAGATGTGGCATTTTGTCTTGAAATTGTTCTTTCAGTCTCTCTTTACTGTTTTCTTTTTGTTAAGTTCACTAAATGTTTTTTCGTCGTGGAAGTTCCTTTTGTGTATTTCGTTCTTTTTTGGTTCTATGGAGTGGTTTCTTTTGTGTTCTGTTGTGTTTCATTTAGTCCTATCTAAAAAAAGTAAATAAATAGAATGCCCCGTGACGAGAGAAATGGTTGAGGAGATAGTTACAACAAGTGTGTAAGTTAGGAAGTTACATCAATGGGTAGTAAACCAAGGGTAAAGGGTTTCAGTTAAGTGTCCCTTCCACCAAAGTAAGTGATTTCAGTCCAGTCTATATCGGGGAGGTTATTTGTGCTATGGGAGAGGGGTGATGTTCTTATGCAGGAGGAAAAGTATATTAGAGTATTGTTTTTGGTAGAAATGGCTTGTGGGAGAATATTTGGTATTAGTCACATATTTACCCTTCGCTTTAGGCTCCCCATTTATATTTTCTTTTTATATTGTTCTCTACCTTTTGTAACCAAAAGTTGGGTTTTTCTTTATAAGTTGTTGTAAATGAGTTTCAGGACTCCTTTTTGGATGATGCTTATTTTTTGCAAGCTTCTTTTTTCTCTAAGAGAAAAGCAGAGATGGTAGATTGTTAAATCCATTGGTTGAGGTTATTTAGATATGCATACAGTTACACGCAATATGCTGGTTGCGCTCTAGAAGTAAAAATTAAAGAATGTTCTTTTCTTTCCTTTTCTCTTCCTTGTTTCCCTATTGTTGCCTGTGTCTTTCATTGGAACATGAAATTTAGTGGGAGATGTCCTCGCCGATTAATAGATCATTCTTGAAGTTCCTCATTATTATTGTAACTTTGAAAGAAGTGGAAATTTGAGAAATGAGGATTAGAGGAACTTTTGGATGATGACGTAATAATGTTTTAAGTTCATTTGCTTCTTTGGAATATAATGAAATCCACCCCAAGTCCTAACTTACAACTATCCCATAAAAATGAAGAACAATAGACATGCTCAATCATTCTTCTGCTTTTCAGGAAAATCCAGATTTATGGAAATGGTTAACTGGCCAGGAGCAACCCCCTGAAGCTGTGAAGACAAATCCTGTGAGCATCCAAGCATGACATTAATTAATGTTTCTCTTTTATCTTTTGACTAAATATATTGTTTTACAATTAGATAATATATCATTGTAGGTATTTACTAGTGTGCAAGAGAAGGTCATGAACAATCTCGACAGACATGCCTCACCTGAGACAAGAACACCACCTGGGCGACAATGGGTAAGGGGTTGGGATGATTTCAAGAGAGGTCGGGATGGACCCATAACAGGAAATCAGTAG

mRNA sequence

ATGGCAACTTTCACAAGGGCTCTAAAAAAAGCTCATCAAGTTTTATACTTGAAAGCCTCCTCCACCATTTTGAGAAGCAAATTGATGCCCCTTTTGCCTAGCGCTTTGATTGGGTTGGAAAATCTACAAAGCCAACTAACAAATCACAATCAGAATCACCATGCTTGTTTCTTTAGTTTTCGTTGCTCTTCAACAAGTACAAATCCTCACATCGATCTCTCAAATGAAGATAGCAAGAGGCATTTATTCAATAGGTTGTTGTACCGGAGCAAACAACGAGGGTTTTTGGAATTGGATTTGGTACTTGGGAAATGGGTAGAGGATCACATCAATTCATTAGATGCAGATGGTATTCGAGCTCTAATTAATGTTCTTGACCTGGAAAATCCAGATTTATGGAAATGGTTAACTGGCCAGGAGCAACCCCCTGAAGCTGTGAAGACAAATCCTGTATTTACTAGTGTGCAAGAGAAGGTCATGAACAATCTCGACAGACATGCCTCACCTGAGACAAGAACACCACCTGGGCGACAATGGGTAAGGGGTTGGGATGATTTCAAGAGAGGTCGGGATGGACCCATAACAGGAAATCAGTAG

Coding sequence (CDS)

ATGGCAACTTTCACAAGGGCTCTAAAAAAAGCTCATCAAGTTTTATACTTGAAAGCCTCCTCCACCATTTTGAGAAGCAAATTGATGCCCCTTTTGCCTAGCGCTTTGATTGGGTTGGAAAATCTACAAAGCCAACTAACAAATCACAATCAGAATCACCATGCTTGTTTCTTTAGTTTTCGTTGCTCTTCAACAAGTACAAATCCTCACATCGATCTCTCAAATGAAGATAGCAAGAGGCATTTATTCAATAGGTTGTTGTACCGGAGCAAACAACGAGGGTTTTTGGAATTGGATTTGGTACTTGGGAAATGGGTAGAGGATCACATCAATTCATTAGATGCAGATGGTATTCGAGCTCTAATTAATGTTCTTGACCTGGAAAATCCAGATTTATGGAAATGGTTAACTGGCCAGGAGCAACCCCCTGAAGCTGTGAAGACAAATCCTGTATTTACTAGTGTGCAAGAGAAGGTCATGAACAATCTCGACAGACATGCCTCACCTGAGACAAGAACACCACCTGGGCGACAATGGGTAAGGGGTTGGGATGATTTCAAGAGAGGTCGGGATGGACCCATAACAGGAAATCAGTAG

Protein sequence

MATFTRALKKAHQVLYLKASSTILRSKLMPLLPSALIGLENLQSQLTNHNQNHHACFFSFRCSSTSTNPHIDLSNEDSKRHLFNRLLYRSKQRGFLELDLVLGKWVEDHINSLDADGIRALINVLDLENPDLWKWLTGQEQPPEAVKTNPVFTSVQEKVMNNLDRHASPETRTPPGRQWVRGWDDFKRGRDGPITGNQ
Homology
[Close]
BLAST of Cla016944 vs. Swiss-Prot
Match: SDAF2_ARATH (Succinate dehydrogenase assembly factor 2, mitochondrial OS=Arabidopsis thaliana GN=SDHAF2 PE=1 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 5.1e-54
Identity = 97/141 (68.79%), Postives = 119/141 (84.40%), Query Frame = 1 

Query: 60  FRCSSTST--NPHIDLSNEDSKRHLFNRLLYRSKQRGFLELDLVLGKWVEDHINSLDADG 119
           F C +T++  N  IDLSNE++KR   NRLLYRSKQRGFLELDLVLG WVE+++NS+D +G
Sbjct: 48  FFCENTASAQNFDIDLSNEENKRRTINRLLYRSKQRGFLELDLVLGNWVEENVNSMDENG 107

Query: 120 IRALINVLDLENPDLWKWLTGQEQPPEAVKTNPVFTSVQEKVMNNLDRHASPETRTPPGR 179
           +++LI+VL+LENPDLWKWLT QEQPPEAV +NPVF+++ EKVM NL++HA+PETR   G+
Sbjct: 108 VKSLIHVLNLENPDLWKWLTEQEQPPEAVSSNPVFSALHEKVMKNLNKHAAPETRAAAGQ 167

Query: 180 QWVRGWDDFKRGRDGPITGNQ 199
            WVRGWDDFKRGRD PI+GNQ
Sbjct: 168 PWVRGWDDFKRGRDAPISGNQ 188

[Close]
BLAST of Cla016944 vs. Swiss-Prot
Match: SDHF2_CRYNJ (Succinate dehydrogenase assembly factor 2, mitochondrial OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=CNA04680 PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 3.0e-06
Identity = 27/91 (29.67%), Postives = 48/91 (52.75%), Query Frame = 1 

Query: 71  IDLSNEDSKRHLFNRLLYRSKQRGFLELDLVLGKWVEDHINSLDADGIRALINVLDLENP 130
           +D + ED K  L  RL+Y++++RG LE DL+L  +  D + ++D + ++    +LD  + 
Sbjct: 68  LDRTGEDEKT-LRARLIYQTRKRGTLETDLILSTFARDELPNMDFEEMKQFDKLLDEPDW 127

Query: 131 DLWKWLTGQEQPPEAVKTNPVFTSVQEKVMN 162
           D++ W   +  PP   K  P+   +Q+   N
Sbjct: 128 DIFYWSVKKRDPPARWKGTPLLEKLQKHAKN 157

[Close]
BLAST of Cla016944 vs. Swiss-Prot
Match: SDHF2_CRYNB (Succinate dehydrogenase assembly factor 2, mitochondrial OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=CNBA4490 PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 3.0e-06
Identity = 27/91 (29.67%), Postives = 48/91 (52.75%), Query Frame = 1 

Query: 71  IDLSNEDSKRHLFNRLLYRSKQRGFLELDLVLGKWVEDHINSLDADGIRALINVLDLENP 130
           +D + ED K  L  RL+Y++++RG LE DL+L  +  D + ++D + ++    +LD  + 
Sbjct: 68  LDRTGEDEKT-LRARLIYQTRKRGTLETDLILSTFARDELPNMDFEEMKQFDKLLDEPDW 127

Query: 131 DLWKWLTGQEQPPEAVKTNPVFTSVQEKVMN 162
           D++ W   +  PP   K  P+   +Q+   N
Sbjct: 128 DIFYWSVKKRDPPARWKGTPLLEKLQKHAKN 157

[Close]
BLAST of Cla016944 vs. Swiss-Prot
Match: SDHF2_SCHJY (Succinate dehydrogenase assembly factor 2, mitochondrial OS=Schizosaccharomyces japonicus (strain yFS275 / FY16936) GN=SJAG_01895 PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 8.7e-06
Identity = 27/87 (31.03%), Postives = 50/87 (57.47%), Query Frame = 1 

Query: 71  IDLSNEDSKRHLFNRLLYRSKQRGFLELDLVLGKWVEDHINSLDADGIRALINVLDLENP 130
           +D S E  K  L +RL+Y+S++RG LE DL+L  + +++++  + + ++   N+L+  + 
Sbjct: 43  VDRSKETEKL-LRSRLVYQSRKRGILETDLILSGFAKEYLSKYNVELLKEYDNLLNEADW 102

Query: 131 DLWKWLTGQEQPPEAVKTNPVFTSVQE 158
           D+  W TG+ Q PE    + V   ++E
Sbjct: 103 DILYWCTGERQAPEHWLNSRVLRDLKE 128

[Close]
BLAST of Cla016944 vs. Swiss-Prot
Match: SDHF2_DICDI (Succinate dehydrogenase assembly factor 2, mitochondrial OS=Dictyostelium discoideum GN=DDB_G0293946 PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 8.7e-06
Identity = 33/104 (31.73%), Postives = 53/104 (50.96%), Query Frame = 1 

Query: 60  FRCSSTSTNPHIDLSNEDSK-RHLFNRLLYRSKQRGFLELDLVLGKWVEDHINSLDADGI 119
           F   +      I ++NE S+   L  +LLY+SK+RG LE DL+LG +   +I+ L    +
Sbjct: 32  FTIKNVEDESKIKINNEISEIEKLRKKLLYQSKERGMLENDLLLGSFATLNIHKLTESQL 91

Query: 120 RALINVLDLENPDLWKWLTGQEQPPEAVKTNPVFTSVQEKVMNN 163
           R    +L   +PD++ W+  + + PE  +T  V   VQ    N+
Sbjct: 92  RDYNLLLQQPDPDIFNWILKKAEVPEEFETE-VLKLVQHHCKND 134

[Close]
BLAST of Cla016944 vs. TrEMBL
Match: A0A0A0LKF9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G072460 PE=4 SV=1)

HSP 1 Score: 356.3 bits (913), Expect = 2.4e-95
Identity = 170/198 (85.86%), Postives = 183/198 (92.42%), Query Frame = 1 

Query: 1   MATFTRALKKAHQVLYLKASSTILRSKLMPLLPSALIGLENLQSQLTNHNQNHHACFFSF 60
           MATF RAL KAHQVLYLKAS TILRSK MPLLP+A IGL+NLQ +LTN NQNHH CF S 
Sbjct: 68  MATFIRALNKAHQVLYLKASPTILRSKSMPLLPTAFIGLKNLQRELTNRNQNHHGCFSSV 127

Query: 61  RCSSTSTNPHIDLSNEDSKRHLFNRLLYRSKQRGFLELDLVLGKWVEDHINSLDADGIRA 120
             SSTSTNP IDLSNEDSKR LFNRLLYRSKQRGFLELDL+LGKWVEDHI+SLDADGIRA
Sbjct: 128 HFSSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRA 187

Query: 121 LINVLDLENPDLWKWLTGQEQPPEAVKTNPVFTSVQEKVMNNLDRHASPETRTPPGRQWV 180
           LINVLDLENPDLWKWLTGQEQPPEA+KTNPVFT V+EKV++NL++HASPETRTPPG+QWV
Sbjct: 188 LINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRTPPGQQWV 247

Query: 181 RGWDDFKRGRDGPITGNQ 199
           RGWDDFK+GRDGPITGNQ
Sbjct: 248 RGWDDFKKGRDGPITGNQ 265

[Close]
BLAST of Cla016944 vs. TrEMBL
Match: V4TAF7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032866mg PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 2.9e-56
Identity = 115/199 (57.79%), Postives = 148/199 (74.37%), Query Frame = 1 

Query: 1   MATFTRALKKAHQVLYLKASSTILRSKLMPLLPSALIGLENLQSQLTNHNQNHHACFFSF 60
           MA+  RA+   H++L  ++S+   RS +    P+A    E L                 +
Sbjct: 1   MASLRRAVINVHRIL--RSSAVANRSSIASASPAA--SFETLLRP-------------QY 60

Query: 61  R-CSSTSTNPHIDLSNEDSKRHLFNRLLYRSKQRGFLELDLVLGKWVEDHINSLDADGIR 120
           R  S+T+ +  IDLSNE+ K+ LFNRLLYRSKQRGFLELDLVLGKWVE+HI+S+D +GI+
Sbjct: 61  RWVSNTTQSLDIDLSNEEKKKRLFNRLLYRSKQRGFLELDLVLGKWVEEHIHSMDKNGIK 120

Query: 121 ALINVLDLENPDLWKWLTGQEQPPEAVKTNPVFTSVQEKVMNNLDRHASPETRTPPGRQW 180
           AL++VL+LENPDLWKWLTGQEQPPEAVKTNPVF+++  KVMNNL+ +ASPETR+ PG+ W
Sbjct: 121 ALVDVLNLENPDLWKWLTGQEQPPEAVKTNPVFSALHNKVMNNLNSYASPETRSEPGQPW 180

Query: 181 VRGWDDFKRGRDGPITGNQ 199
           VRGWDDFK+GRD P++GNQ
Sbjct: 181 VRGWDDFKKGRDSPLSGNQ 182

[Close]
BLAST of Cla016944 vs. TrEMBL
Match: K4BLW2_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 3.8e-56
Identity = 111/182 (60.99%), Postives = 139/182 (76.37%), Query Frame = 1 

Query: 24  LRSKLMPLLPSALIGLENLQSQLTNHNQNHH------ACFFSFRCSSTSTNP-HIDLSNE 83
           LR  L+  +P  +I      S  T+  Q+H+        F  F  S+ +++P +IDLS+E
Sbjct: 4   LRRALLFTIPR-IINSSKTASVATSTLQSHNLYRPLAGTFSRFISSNETSSPMNIDLSDE 63

Query: 84  DSKRHLFNRLLYRSKQRGFLELDLVLGKWVEDHINSLDADGIRALINVLDLENPDLWKWL 143
           +SKR LFNRL+YRSKQRG+LELDLVLGKWVE+HI S+D +GI++L++VLDLENPDLWKWL
Sbjct: 64  ESKRRLFNRLIYRSKQRGYLELDLVLGKWVEEHIQSMDENGIKSLVHVLDLENPDLWKWL 123

Query: 144 TGQEQPPEAVKTNPVFTSVQEKVMNNLDRHASPETRTPPGRQWVRGWDDFKRGRDGPITG 199
           TGQEQPP+A+ TNPVF++V EKVMNNL+ H SPETR  PG+ WVRGWDD KRGRD PI G
Sbjct: 124 TGQEQPPDAISTNPVFSAVHEKVMNNLNNHTSPETRAVPGKPWVRGWDDIKRGRDAPIAG 183

[Close]
BLAST of Cla016944 vs. TrEMBL
Match: F6HWL4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0283g00060 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 4.9e-56
Identity = 104/143 (72.73%), Postives = 124/143 (86.71%), Query Frame = 1 

Query: 56  CFFSFRCSSTSTNPHIDLSNEDSKRHLFNRLLYRSKQRGFLELDLVLGKWVEDHINSLDA 115
           C FS   S +  +P IDLSNE+SKR LFNRLLYRSKQRGFLELDLVLGKWVE+HI+S+D 
Sbjct: 48  CGFS---SDSIHSPEIDLSNEESKRRLFNRLLYRSKQRGFLELDLVLGKWVEEHIHSMDH 107

Query: 116 DGIRALINVLDLENPDLWKWLTGQEQPPEAVKTNPVFTSVQEKVMNNLDRHASPETRTPP 175
           +GI++L++VLDLENPDLWKWLTGQEQPPEAV  NPVF +V+EKVMNNL+ H++PETR  P
Sbjct: 108 NGIKSLVHVLDLENPDLWKWLTGQEQPPEAVSINPVFCAVREKVMNNLNSHSAPETRAMP 167

Query: 176 GRQWVRGWDDFKRGRDGPITGNQ 199
           G+ WVRGWDD K+GRD P++GNQ
Sbjct: 168 GKPWVRGWDDIKKGRDSPVSGNQ 187

[Close]
BLAST of Cla016944 vs. TrEMBL
Match: A0A067F365_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g039261mg PE=4 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 6.4e-56
Identity = 114/199 (57.29%), Postives = 148/199 (74.37%), Query Frame = 1 

Query: 1   MATFTRALKKAHQVLYLKASSTILRSKLMPLLPSALIGLENLQSQLTNHNQNHHACFFSF 60
           MA+  RA+   H++L  ++S+   RS +    P+A    E L                 +
Sbjct: 1   MASLRRAVINVHRIL--RSSAVANRSSIASASPAA--SFETLLRP-------------QY 60

Query: 61  R-CSSTSTNPHIDLSNEDSKRHLFNRLLYRSKQRGFLELDLVLGKWVEDHINSLDADGIR 120
           R  S+T+ +  IDLSN++ K+ LFNRLLYRSKQRGFLELDLVLGKWVE+HI+S+D +GI+
Sbjct: 61  RWVSNTTQSLDIDLSNDEKKKRLFNRLLYRSKQRGFLELDLVLGKWVEEHIHSMDENGIK 120

Query: 121 ALINVLDLENPDLWKWLTGQEQPPEAVKTNPVFTSVQEKVMNNLDRHASPETRTPPGRQW 180
           AL++VL+LENPDLWKWLTGQEQPPEAVKTNPVF+++  KVMNNL+ +ASPETR+ PG+ W
Sbjct: 121 ALVDVLNLENPDLWKWLTGQEQPPEAVKTNPVFSALHNKVMNNLNSYASPETRSEPGQPW 180

Query: 181 VRGWDDFKRGRDGPITGNQ 199
           VRGWDDFK+GRD P++GNQ
Sbjct: 181 VRGWDDFKKGRDSPLSGNQ 182

[Close]
BLAST of Cla016944 vs. NCBI nr
Match: gi|659082578|ref|XP_008441916.1| (PREDICTED: uncharacterized protein LOC103485912 [Cucumis melo])

HSP 1 Score: 362.8 bits (930), Expect = 3.7e-97
Identity = 174/198 (87.88%), Postives = 182/198 (91.92%), Query Frame = 1 

Query: 1   MATFTRALKKAHQVLYLKASSTILRSKLMPLLPSALIGLENLQSQLTNHNQNHHACFFSF 60
           MATF RAL KAHQVLYLKAS TILRSKLMP LPS  IGLENLQSQLTN NQNHH C FS 
Sbjct: 3   MATFIRALSKAHQVLYLKASPTILRSKLMPFLPSVFIGLENLQSQLTNRNQNHHGCSFSL 62

Query: 61  RCSSTSTNPHIDLSNEDSKRHLFNRLLYRSKQRGFLELDLVLGKWVEDHINSLDADGIRA 120
             SSTSTNP IDLSNEDSKR LFNRLLYRSKQRGFLELDL+LGKWVEDHI+SLDADGIR 
Sbjct: 63  HFSSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRD 122

Query: 121 LINVLDLENPDLWKWLTGQEQPPEAVKTNPVFTSVQEKVMNNLDRHASPETRTPPGRQWV 180
           LINVLDLENPDLWKWLTGQEQPPEA+KTNPVFT V+EKVMNNL++HASPETRTPPG+QWV
Sbjct: 123 LINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVMNNLNKHASPETRTPPGQQWV 182

Query: 181 RGWDDFKRGRDGPITGNQ 199
           RGWDDFK+GRDGPITGNQ
Sbjct: 183 RGWDDFKKGRDGPITGNQ 200

[Close]
BLAST of Cla016944 vs. NCBI nr
Match: gi|449470271|ref|XP_004152841.1| (PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Cucumis sativus])

HSP 1 Score: 356.3 bits (913), Expect = 3.5e-95
Identity = 170/198 (85.86%), Postives = 183/198 (92.42%), Query Frame = 1 

Query: 1   MATFTRALKKAHQVLYLKASSTILRSKLMPLLPSALIGLENLQSQLTNHNQNHHACFFSF 60
           MATF RAL KAHQVLYLKAS TILRSK MPLLP+A IGL+NLQ +LTN NQNHH CF S 
Sbjct: 1   MATFIRALNKAHQVLYLKASPTILRSKSMPLLPTAFIGLKNLQRELTNRNQNHHGCFSSV 60

Query: 61  RCSSTSTNPHIDLSNEDSKRHLFNRLLYRSKQRGFLELDLVLGKWVEDHINSLDADGIRA 120
             SSTSTNP IDLSNEDSKR LFNRLLYRSKQRGFLELDL+LGKWVEDHI+SLDADGIRA
Sbjct: 61  HFSSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRA 120

Query: 121 LINVLDLENPDLWKWLTGQEQPPEAVKTNPVFTSVQEKVMNNLDRHASPETRTPPGRQWV 180
           LINVLDLENPDLWKWLTGQEQPPEA+KTNPVFT V+EKV++NL++HASPETRTPPG+QWV
Sbjct: 121 LINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRTPPGQQWV 180

Query: 181 RGWDDFKRGRDGPITGNQ 199
           RGWDDFK+GRDGPITGNQ
Sbjct: 181 RGWDDFKKGRDGPITGNQ 198

[Close]
BLAST of Cla016944 vs. NCBI nr
Match: gi|700206113|gb|KGN61232.1| (hypothetical protein Csa_2G072460 [Cucumis sativus])

HSP 1 Score: 356.3 bits (913), Expect = 3.5e-95
Identity = 170/198 (85.86%), Postives = 183/198 (92.42%), Query Frame = 1 

Query: 1   MATFTRALKKAHQVLYLKASSTILRSKLMPLLPSALIGLENLQSQLTNHNQNHHACFFSF 60
           MATF RAL KAHQVLYLKAS TILRSK MPLLP+A IGL+NLQ +LTN NQNHH CF S 
Sbjct: 68  MATFIRALNKAHQVLYLKASPTILRSKSMPLLPTAFIGLKNLQRELTNRNQNHHGCFSSV 127

Query: 61  RCSSTSTNPHIDLSNEDSKRHLFNRLLYRSKQRGFLELDLVLGKWVEDHINSLDADGIRA 120
             SSTSTNP IDLSNEDSKR LFNRLLYRSKQRGFLELDL+LGKWVEDHI+SLDADGIRA
Sbjct: 128 HFSSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRA 187

Query: 121 LINVLDLENPDLWKWLTGQEQPPEAVKTNPVFTSVQEKVMNNLDRHASPETRTPPGRQWV 180
           LINVLDLENPDLWKWLTGQEQPPEA+KTNPVFT V+EKV++NL++HASPETRTPPG+QWV
Sbjct: 188 LINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRTPPGQQWV 247

Query: 181 RGWDDFKRGRDGPITGNQ 199
           RGWDDFK+GRDGPITGNQ
Sbjct: 248 RGWDDFKKGRDGPITGNQ 265

[Close]
BLAST of Cla016944 vs. NCBI nr
Match: gi|747054179|ref|XP_011073284.1| (PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Sesamum indicum])

HSP 1 Score: 228.8 bits (582), Expect = 8.3e-57
Identity = 103/140 (73.57%), Postives = 121/140 (86.43%), Query Frame = 1 

Query: 59  SFRCSSTSTNPHIDLSNEDSKRHLFNRLLYRSKQRGFLELDLVLGKWVEDHINSLDADGI 118
           S+  + ++ +  IDLSNE+SKR LFNRLLYRSKQRG+LELDL+LGKWVEDHI+S+D  GI
Sbjct: 40  SYTANESAQSLDIDLSNEESKRRLFNRLLYRSKQRGYLELDLILGKWVEDHIHSMDETGI 99

Query: 119 RALINVLDLENPDLWKWLTGQEQPPEAVKTNPVFTSVQEKVMNNLDRHASPETRTPPGRQ 178
           ++L++VLDLENPDLWKWLTGQEQPPEAV  NPVF SV+E+V NNLD HA+PETR  PG+ 
Sbjct: 100 KSLVHVLDLENPDLWKWLTGQEQPPEAVNANPVFASVKERVTNNLDNHAAPETRATPGQS 159

Query: 179 WVRGWDDFKRGRDGPITGNQ 199
           WVRGWDDFKRGRD PI GNQ
Sbjct: 160 WVRGWDDFKRGRDSPIAGNQ 179

[Close]
BLAST of Cla016944 vs. NCBI nr
Match: gi|567888920|ref|XP_006436982.1| (hypothetical protein CICLE_v10032866mg [Citrus clementina])

HSP 1 Score: 226.5 bits (576), Expect = 4.1e-56
Identity = 115/199 (57.79%), Postives = 148/199 (74.37%), Query Frame = 1 

Query: 1   MATFTRALKKAHQVLYLKASSTILRSKLMPLLPSALIGLENLQSQLTNHNQNHHACFFSF 60
           MA+  RA+   H++L  ++S+   RS +    P+A    E L                 +
Sbjct: 1   MASLRRAVINVHRIL--RSSAVANRSSIASASPAA--SFETLLRP-------------QY 60

Query: 61  R-CSSTSTNPHIDLSNEDSKRHLFNRLLYRSKQRGFLELDLVLGKWVEDHINSLDADGIR 120
           R  S+T+ +  IDLSNE+ K+ LFNRLLYRSKQRGFLELDLVLGKWVE+HI+S+D +GI+
Sbjct: 61  RWVSNTTQSLDIDLSNEEKKKRLFNRLLYRSKQRGFLELDLVLGKWVEEHIHSMDKNGIK 120

Query: 121 ALINVLDLENPDLWKWLTGQEQPPEAVKTNPVFTSVQEKVMNNLDRHASPETRTPPGRQW 180
           AL++VL+LENPDLWKWLTGQEQPPEAVKTNPVF+++  KVMNNL+ +ASPETR+ PG+ W
Sbjct: 121 ALVDVLNLENPDLWKWLTGQEQPPEAVKTNPVFSALHNKVMNNLNSYASPETRSEPGQPW 180

Query: 181 VRGWDDFKRGRDGPITGNQ 199
           VRGWDDFK+GRD P++GNQ
Sbjct: 181 VRGWDDFKKGRDSPLSGNQ 182

The following BLAST results are available for this feature:
BLAST of Cla016944 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SDAF2_ARATH5.1e-5468.79Succinate dehydrogenase assembly factor 2, mitochondrial OS=Arabidopsis thaliana... [more]
SDHF2_CRYNJ3.0e-0629.67Succinate dehydrogenase assembly factor 2, mitochondrial OS=Cryptococcus neoform... [more]
SDHF2_CRYNB3.0e-0629.67Succinate dehydrogenase assembly factor 2, mitochondrial OS=Cryptococcus neoform... [more]
SDHF2_SCHJY8.7e-0631.03Succinate dehydrogenase assembly factor 2, mitochondrial OS=Schizosaccharomyces ... [more]
SDHF2_DICDI8.7e-0631.73Succinate dehydrogenase assembly factor 2, mitochondrial OS=Dictyostelium discoi... [more]
BLAST of Cla016944 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LKF9_CUCSA2.4e-9585.86Uncharacterized protein OS=Cucumis sativus GN=Csa_2G072460 PE=4 SV=1[more]
V4TAF7_9ROSI2.9e-5657.79Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032866mg PE=4 SV=1[more]
K4BLW2_SOLLC3.8e-5660.99Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
F6HWL4_VITVI4.9e-5672.73Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0283g00060 PE=4 SV=... [more]
A0A067F365_CITSI6.4e-5657.29Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g039261mg PE=4 SV=1[more]
BLAST of Cla016944 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659082578|ref|XP_008441916.1|3.7e-9787.88PREDICTED: uncharacterized protein LOC103485912 [Cucumis melo][more]
gi|449470271|ref|XP_004152841.1|3.5e-9585.86PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Cucumis sat... [more]
gi|700206113|gb|KGN61232.1|3.5e-9585.86hypothetical protein Csa_2G072460 [Cucumis sativus][more]
gi|747054179|ref|XP_011073284.1|8.3e-5773.57PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Sesamum ind... [more]
gi|567888920|ref|XP_006436982.1|4.1e-5657.79hypothetical protein CICLE_v10032866mg [Citrus clementina][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005631SDH
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006121 mitochondrial electron transport, succinate to ubiquinone
biological_process GO:0034553 mitochondrial respiratory chain complex II assembly
biological_process GO:0080022 primary root development
biological_process GO:0018293 protein-FAD linkage
biological_process GO:0006099 tricarboxylic acid cycle
cellular_component GO:0005575 cellular_component
cellular_component GO:0005739 mitochondrion
molecular_function GO:0003674 molecular_function
molecular_function GO:0008177 succinate dehydrogenase (ubiquinone) activity
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU37174watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU75247watermelon EST collection version 2.0transcribed_cluster
WMU79057watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla016944Cla016944.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU37174WMU37174transcribed_cluster
WMU75247WMU75247transcribed_cluster
WMU79057WMU79057transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005631Flavinator of succinate dehydrogenaseGENE3DG3DSA:1.10.150.250coord: 78..163
score: 1.3
IPR005631Flavinator of succinate dehydrogenasePFAMPF03937Sdh5coord: 84..153
score: 7.7
IPR005631Flavinator of succinate dehydrogenaseunknownSSF109910YgfY-likecoord: 84..149
score: 4.32
NoneNo IPR availablePANTHERPTHR12469PROTEIN EMI5 HOMOLOG, MITOCHONDRIALcoord: 69..179
score: 1.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla016944Cla97C11G206870Watermelon (97103) v2wmwmbB361
Cla016944ClCG11G000550Watermelon (Charleston Gray)wcgwmB107
Cla016944CmaCh04G019350Cucurbita maxima (Rimu)cmawmB739
Cla016944CmoCh04G020520Cucurbita moschata (Rifu)cmowmB733
Cla016944Lsi11G000550Bottle gourd (USVL1VR-Ls)lsiwmB109
Cla016944Cp4.1LG01g16830Cucurbita pepo (Zucchini)cpewmB455
Cla016944Carg24967Silver-seed gourdcarwmB0727
Cla016944Bhi07G000005Wax gourdwgowmB565
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla016944Watermelon (Charleston Gray)wcgwmB110
Cla016944Bottle gourd (USVL1VR-Ls)lsiwmB114
Cla016944Watermelon (97103) v2wmwmbB366
Cla016944Wax gourdwgowmB567