Lsi10G000070 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi10G000070
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionCoffea canephora DH200=94 genomic scaffold, scaffold_255
Locationchr10 : 170646 .. 181074 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGCAAGAAATAGATATATATATATTAATGGAAGAGATGGTTTAGTTCTTTCACAGTACAAGCAACCAAATATACTCAAAGATACAAAAGATGGAATGACAAGATGAAGAGATGAAGCTGGCGGCAACAGTGTCTTATTTGCCGACAGAGATGGTGGCTCGTTGTCTGATTGCGTTGAGGAGGAGAAATGGTGGTAGCTTCACTCTCTTTCGATGTTGAGGCTCAGCAAGTCTCCGATGATGATGGAGATGGTGCACTCGACTGTCGCCAGGAAGGAAGAGATGAAAGATGGCTGCCTGATTCCCGAACTCTTCTTTGGCACAAAGAATTTCTCTAAATATCTAATCTCTAATTTCTAACTAACTAACTATCTAACCCCTTGATCTGTATTTTAGTTGGCTTTTATAGCCCCAAAATTGTACTTTATATTATGTCAGCGGATAAGTTTCTGACGCAGAGGATCAGGCTGCGTTTGACAATCGTCCTCTTTGATCAGGTAGGCTGTCACTGTTCAGCGGCTCAAGGGGCCGAAAATCCTCTATCTCTAGCTGTCAAGATCAGGTTACCCAAGGTTCCAGGATTTGTCTTTTAGTGTCATGCGTATGATGTATGCGTTCTTCGTTTGTCTTCATGCATGCGTTGAACCTTGATTTTCTGCAAAATTTGGCGTTCAAAAGAGTTAAATTACAAAATATTCTTTCTTAAGCCTATTTACAAGCTTGTACGCATACGAAGAATTTATCATATATTTAAGCATTAGATGATGCATTTTTCTACATTCTTTCACAATTATTCTAAGAAAAGAGAAGCAATAACTTGTCTACAAGTTATCACACCCCCAAATTTAGAATAATGCTTGTCCCCAAGCATGTCTTTTACTAAAGAAATTCAACGCCATGTTCATTTTTCTAGCGCTAACTATAAAAAGGTTGTTCATTAGAGGATCAGTAGGACTTAAGGATTTAAATGTAATTACATGAGTAAAACGGTAATTTGACCTAACTGTAATTACGAGCGATTTGTGAAGGGTCGATCTACTATTGATTGGTTACATTCTTGGACAAAGAAACATATCTACAGTGTGAAGAGTGCAGTTGTGTGTCTTTAGTGGAGTGATCTGCCGTTAATGAATATCAAATAATTTAATTAAAGAGTTTAATTAATTAATTAATCTCGTATCATCTGAGTTTATAATCTGTAGGTCCATTTGTAAGCTCTAGATCTATATTATTTTCTTTAATTTAGTTTAATATTGTTGATTAAAACTTTTAACTAGAAGTATTCATTTTAAGTTGGGTGTATTTGATTGCATTAAGGCAAAATGGGATAGTTAGTCTAAGTGTGAAATGTCTTAAGTAGATATGGAAAAACGGAGTGTTGAGTGTGAAGAAATTTCGCTAAGTGTAAGGAAGGAATAAAATGTGAAAAGAATTGGTTGAAATTGGAGGGTGAAGTCGAGAGAGGGAGTGAGATTTTTCTCCCAAATTAATTAAGGAAATGAATGGAAAGTGGAATGAATTTTGTGATGAACGTCAAGGTTGGCAAAGGGAAATAAATTTGTGAATTAAGTGTTGGAAATGGGAGTGTGACCCGAGAGGCTGAGGGTTAGCAACCTTCTTAATTATTTTAGGGAATTTAAATGGAAAAGGATAATGTATAGTAATTTTTCTTTTAATTGTGTTTTAAGGTTGGCAAAGGAGGGGTTTAGACAAGAAGTAGTGGGTTGAAAAGATGAAGTAGGAGCTGGCAGAAGCTGGGAAGAGGGTGATGACGTGCTGTCGATTTGTGTAAATAGGTAAGATCAGTGCTACCATTTTTACTCAAGTAAACCTTGAAGTTCTTCAGCCAAAACTCAGAGAGATCGAAGAAGATGGTGATGGAGGGCTGCTATGCCGAATTTCGATCAGAAAGTTGGTGAAATTGATGAAAAAGCAGCTGCTGGGTTGAAGATTTAGACAAAACTGAGCAAGATGAATGGTTTGGTTGATTTTGAGCTATTGAGGAGGATTCAAAGGCTCAAATTTGAAGGTAAGTTCAATTAAAGGTTATTTAAGAGTTTTATGCAAGAAATTAGGGACGAATTTGGTTGGAATTGATGGAATTTGAACTGAAATTGTGCTGAAAACAGAGTAACAAACAGCTGGACGTTTGAACTTTTGGTAGAGTTCGTGATGATTTGGAGGAAGAATAAGCCATAAAAACCAATCTTTGGTGAGTCCACTCTTAAATTTTCATCTTAGAATTGGAAGATAGGGTATAAATAGGCTGATGGTAGGTCATTTTAGTAGCAAAGAAATGCAATGAAGAAATAGTTGCTGTCAAAATTCAGCTGTCAACCATCAATTTTACTGTTGTTTTTCACATTTTGGCTGCTGCTGTATTGTTTTATTTTTTTTTTGAGTTTTTAGCTTGATTAACCACACTTTTCCTTGAAATTCCCACATTCTATCATATTCAATATCTTATGATAGTTTTAGCTTGAATTGGCCTTCACAGTTACGGAAGTGTGGGTTAAGAAGAATTAAAAAGATTATAATAAGCCAGGTGATTGGAAGGGAAAATTATGTTGATACCTTGGATTAAATTATTTCAGGACAAAAGGAGGTTGGAAAAGCCTATTATCCAAGTAGTTCTCGCCATTGAATATGAGTGACAAAATAATTTTAAATAAATTCTTTTATGACCTAAAAGCATGATTTAGTATGAAGTGAGCTCTTTACTTTAACACGTGTTAGAATATGAGTTTCCTACTGTAGGAGTTTTATGAGTTACCTTATGAATGTGTTAGGATTTTTAACCTGCAATCAGATAAATCCCAACAAGTTCCCAAGAAACAGAGTATTCTCTTAATAGTTTTATTTATGAACCGCTCAGGAAAAGCTTACAGCAACAAAAGATGGAAATAACAAAGAAAATGACACAATGGAATCCTACTCCCAGCACATTGTAGAGGGCTGGTAATCCTCTCCCTGCAAGTATCTCTTGCCAAAAATTATCCTCCCTTTCTTCACCTCCCAAAACCCTTGCTTAAGCCCTCCTCTCACCTGGGCCCCCTCTTTTCCCTCAGCTTGGTCCCCCCCCCCCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCCCCCCCCCCCCCCCCCTCTTCTAACTAAGTTCCACTCCATGAATATTCTTTTCCGATTTTCCCTTCTTGCCCCTCCGACTATAAGTATGTATAATAGGTCTTACAGAATGTTAAGATGTTTTATTGTGGCTAAGCTTTGGAAGGCCATTTCTAGGAGAAATGCATGCCTACAAGGAAAGAAGTTGTGTTTTATGAATTCTTGATTATGACATGTGATTTCTAAAGAATAGTTTTGTACCATTATGCTTTGTACCCTAGTTCAAGGACTCTCTTTACTTGAGGAGATGAAGGTATCTGGGAAGTCTGGTATATGAGTATAGTATAGGTCTTTGGGACCCACTTTGGCACACAAATAGGATTTGGGCCAATAAGCAAAGACATCTTCCTCAGCAACCTATTCGTCGTGTTCACACGCCCAAGCAAAACTTGCCAAGAAAAGAACTTAATTTTCTTTGGTATCGTAATCATCCATAACACGTCAAGGACCGACTCAACAACGGGTGAGGGATCCAATAACAACCTAAAGAAAGACTTACAAGAGAAACCCTCCAAGGGAGAAGGGCAAACTCACACCACAAAGAATCTCAAGTCCCTTAAGAGCCAACTACACCAACCACGCCATTTGATATAAATTCTGAACTTTAATATACATTTATTATCAATCGGCTCGGTTTAATTTATTTTGCCCTTTGTCAAACCGGACCGAAAAGTTTTGATTTGTTTAGATTTCCAAACCAAAACTGCCAAATCAACCCAACAAGCGGTTTCAGTCGGTTTAAGCGATTTCTTCAATTTCTTTGTTTTTCGATTTTTCCTTGCACCCCTACTCTCTAAGTGTTTGTTAGCTTTTGCAACTTTTATAGAATTTGAATATCAAATTCCTCATCTCAAGCTTTAAATTTGATTTTCAATTGGTAGAAGTTTGGAAATAGTTTTAAAATAATCCTTTAGGTAGAATTGACCATTAGTTGGTGTAACCAACAAATGACATTACCTCCCAAAACATTAACAAAATTTGGCTCCTAAAACAACGTTATGTGGAACGACATAATAAGTGTCTTGGAAAAAAATAATAAATAAATAAATGGAAATAGGAGTTTAGAAGAGAATGACATTCACATTACCCGTTCTGGGGAATAGCTCTGGCTTTGAAGAAGCCCAATTCCCCATTAAGCAAGCAGGTCTCAGGCAAAAGAGGTCCCCAACTCCTGGGAGAATTTAATTGCTTCTCGTTGGGGTTTTGAATATTGCCGCTTTGATCATCCTTGCAATTAGGCAATGGATTTTTTCTCTACTCATTCTGTCTTTATCTTACTTGTTGAGGCCTCACGAGATTTTCTTTTGTTGCTGCTGCTGCAAAATTATTACCGATCCCAAGATGAAGCCTCTGATAGCGTATAGCGTTCGATTACAACAATCTAACTTTGATAACATGGCTGATTAACTAGCTTTGAAGAATTATACAAACCTTGGATATTCCAAGGCAAAAGAGTCATTCCAAAGAAGTTCAAATAGAACGTCTTGTCACCAGTAATCACCACAAGAGCACACACCATCCCGAAAATGATGGTATCGAATAGGATCTCGAATGACAATCACTCGATTCTCCAACTGTGCAACAAGTTTTGCAAAGATATGACAGTCTCCACAGATTCTGAGGTTTTTCCTTATATGAATGGTTTTCTGATTTGGCAAACTCATCAAACCAAACACAATTGCCAGTTTCTCGCTGTGGTATTGAAGGGAATCCTCCATCTGTTCTCCTTCAAGATCCTGCAGCACAAAATTTGTATCGGGAACATAACCCACTCTCATTAATCTTTGAATTAATTGGCGTAGCTCCCTCTTTATCTCTTCTATTCTTGGATGTGAGTTGTCACCCAATATAAAAGCATGAACTTGTTTGCTCACTTCAATCCAGCTGCATCCTGGTTCTTTCTTCACTCCCCTAGCTCTCATCCTCATCCTAACTTCTGCAACATCTTCCCATTTCTGTGAATTGGCATAAATATTCGATAACAATATGTACGTCCCAGCATCGGCAGGATCCAGTTTCAGGATTTCTTTAGCAGCATATATGGCTAAATCCACATTCTTGTGGACTCTGCAAGCACCAAGCAAGATTCGCCATGTCACTGCATCTGGTTCATGGTTCATTTCATGAATCAACTTCACGGCTTCATCAAGCTTTCCAGCTCTTCCAAGAAGATCAATTATGCAACCATAGTGCTCTCTTCCAGGATCGATCCCAAAAAGCTTTTTCATAGATTGAAAATAGTACCATCCATCTTTTACAAGCCCTGCATGACTACAGGCAAAAAGAACCCCAAGTACAGTGATGTAATTTGGCTTTGGCCCTTTAGATTTCATTGATTCAAACAATTTGAGCGCGTCTGTGCTAAAGCCATTTTGAGCTAATCCTGCAATCATAGTGCTCCATGAGATGACATCCTTCTCTGTCATCGTCCTAGTGAAAAGAAGGTTTGCATCTTCTAGACTGCCACATTTGCAATACATGTCAAGAAGTGCGTTGTTAAGGATTAGATCCTGATCATACTTCAATACATGGACATGGACCTGTCTGCCCAACTCTAAGAGCGCTAGCCCAGTGCAGGCTCGCAAAACACTAGTTACTGTAGACTGATCAGCCGCAAAACCAGCTCTCTTCATTCTCTTATAAAGATGTAAAGCTTCATCCCCATCACTGTTCTGAGCAAAACCACCAATAATGGAGTTCCACACAACCAAATCACCTGTAACCATCTCGTTAAAGACATTCAAAGCATCTTGCTGTTCACCCAATTTTGAGTAAGTGTCGATCAGAGCACTCCTTACAAAGACATCAGATTCCAAACCCACCTTCATGATACTACCATGTAGCTGCCTGAGGTTCAACAAACCATCGCAAGCTCTCAAAACAGAAGAATACGTATACATATTAGGTCGAACACCTTCTCTAAGCATCAATATCAGAAACTCCAACGCCTTATGATTAAGATTGGAATTGGAGTAAGCAGATATCATAGTCGTCCAAGAGACAACATTCCTGTCAGGCATTTCGTCGAACAGATTCTGGGCTTCATCCAAAAGGCCGAATTTTACATACATATTAAGCAGAATATTGATCAAGAATGTTTTGGGCTCATACCCATTTGAAAAAACATGCTTATGAATAAGCCGACCTTGTTCTACAGCCCCACGAAAAAGGCAGCACTTAATGAGCTCGGAGTAAGTAATTGCATCAGCGCAGAGACGGTTACTCTGCATCGCTTCCATCGCTTTCATGGCTCTCGGAAGATCCCTCTGATAGCAAAACTTCGTGAACTCGTCGACTAACGAGTAAGCCGACACTGAACAAAAGCTCCGAGCAAGCTTCAGCATTAAAGTTGGCCTTCTCTTGGCTTTTTCAAGGATGAAAAACACAAAAGCGGTAGATTCAAATCATCCATGAAAAACAGATTCGAAGCTCATAAGCCAAGCTTCTTCACAAATTGTAATAAAATCCGATGTCGCTCGATTCTCACTCCATCTGACTCCAAATCCCTTCATTGGTGAAAACGAAACGCACAAAAGAAGAAAACCCTAGGAGCAATATAAAAAAAAGGTTAATGGGGATAGGAAATCGCGGGTGAGAAGTTGAGATTGAAAATGTTGTGGAGAATAAAAGCGTTGGTAGATAAGTTCGTGGAGGAAGTGAAGGCGGAGATTGAAGCGGATTTTGAAGATAGAATGAGGAAGGAGAAAGAAATGCAGAGCAACATCAAAGAAGGAGAACAGGAAGTAACTGAGCGGGAAGCTGAATGGAAGGCCGAGCTTTCACGCCGAGAGGTACCCTTCAAAATGCCCAACTCTCTTCTTGTCTCCTTCTCTTCTCTTATTAAAAATTTTCAGCAACTTTTTTGCCCATTGTTTTATAACACTTGCTGTATCTTAAGGAAATTTTTTAAAATTGAAAAATAAATAAAACTATTTACTTTATAAAATAGTCTATTAATGTCTATCAGTATTTTTATTATTTTTTTTTTTGTTATTTTTTATAAATAATTTAACATTTTTTCTATCTGTAAAAATTTTCCTATATTTATCTTAATATCGAACCAAAACAAAAATTTTAGAACTTGTTTGACAAAGAATTCGGATTCAATAAGTTCAACAAATATGTATTTAGCAAATAATTATGATTCTATTTTTGAAAATCATTTTCGAATTCTATGATCCAAACCGTGTAAATTTTGAAAACAACCTATTTATGTTTTCATTCAATACAAATTTTGAATATTAATTTTAAAATGGAGAATTATATTAAATAAAGATAAAAATATTTAAAAATATAATATGTCATGTTACAAAAAAAAAATATAATATCTATTATGTAAGGTGTTATAATGTTTTTTTTTTTAACATAAATCATACTCATAAATAAATTAATAATAGTTTGTTGTAAACTAAATATTAGTGAGTAACTACAACTAGTTTTATGGTTTATAAATATATATAGTATCAAACACATTTTAAACAATTGTTTAAATTAGAATTCAATTTCTTAATCTGCTAACAAACACATATCTGAAAATATGAAATACAACTATGTGTTTCATTGAATCCCTTGTTTTTAAATTTTCTACCAAATAGACTCTAAACTTTTTTTTTTTCTTTTTTATGGCATATCATTACGAATATACTTAATCTTCCTCAATGTTTCAAGATTTGGGAAAAACATACAAAATAATTGTGGTTGATCATTGTTTTAGATGTGTTGTTAAAGGTGAAAAACTTCGAGTGGTATTTTTTATAATTTTTCTTTTGGTTACCCTCATTTCTTTCTTTTTTATCCAGTGTTAAATCGATGGCCTATGTTTTGTGTTAAAATAGGTTCTCAATTTTCAATTTTTGTTATTTCCTAAAGTTCACAAATTATTATTTATAGAATTGAAAATTTAGAGTTTTATTAACGTTAACATTCAATTTTTTATTTAATATGTAGTTGATTTTTTTAAAAAAATTAATATGTCAATAATCCATTCGATACAAAATTGAATGTTTAAAGATTTAGTTCATGAGCCTACTATACACTTTTTTAAGTTCAAGAATTTGTTGGAAACAAACTTGAAAATTCATTGACCAAACTTGTAACTATATTTATAGTATACTAAAGTTTTTTTAAGTTCAACAACGCGTGTTGAAGGATTTGCTTACAAAAAACATATAGTTAAAGGGTTAGAGCCAAGAGTACCTGACTTATTGAATTTTGTTTAAGTTAGCTATATTATATTAAATTATTACATGTTAAATTACAAATTTTGGTCTCTATGATTTGGAGAAAGTTAAAATTTAGTCAGAATTTCATCCATATGATTTGATAAAACCTCATAAATATCCTTTATGGTTTGATGACCCATAAATTGTCCATGTCTATGTAGTAGGGTTTATTTATGAAGGTTTTATCGAACGACATGGATAGATTCTAATTTTTAATTACATGGACTAAATTATAACTTTATCCAAAACAAAGAACCAAATTTGTAATTTCTATATGTTTTAATCTTTATTTGTTTTTTTTCATTATTTGGTCTTTTATGTTTAAATTTTTTTAATTTAGTCTCTTATATTTTAACATTTCTTAATTATACCTTCACTATTGAGAAATATTAAAACTGGCTTGTGATAAGAGTTGTAGAGTTTCAAGAAGGAAATTGGTCATCTAATAATTTAAACCGTTAGCAAAAATTTATAACGTATTATTATTGTATATGTTTTTCATAAGTCTATTAACATTTCATAGTAGTGAGGATATAATTGAAAAATGATAAATACTTAAAAAAAAAAAAAAAAAAACTAAGGCCATTGGTAACCAATTGATTTTTTGTTTTATGTTTTTGAAAATTAAGTCGACACTACTTCCACCATCAAATTTCTTCATTTGTTATCTACTTTTTACCAATGGTTTAAAAAACCAAACTAAAATTTGGAAAAGAAAAGAAACTTTTGAGAACTTGTTTTTGTGTTTGAAATTTGGCTAAAAATTCAACTATGGTACTTAATTATGGTAAGAAATTGAGAGAAAATAGGCTTAGTTTTCAAAAACCAAAATGATTACCAAACCGACATAAATTAGAAGTTTTTAACATTATTGGCCAAGTTGGAAAAATATCCCACTTAATTTATAAGTTTAGCCCTTACATTATAGCATAGTATATATTTAGTAAATGTCTAATAAAACTCTAAACTTTCAATTTTATTTTTAATGGATTCTTAACCCATTCAACTTCATATTGTTAAAAAAAATAATAATAAATACTAGACATAATGTTGAAATTAAATAGTTTCTGTATTGAAGAAAATGATTCCCATGCAAAATTTACAGAAGAATATGATGCTAGTACTTTTATTCAGGCAGAGGTTGCACGACAAGAATTAAAGTTGAGAATGGAGAAGGAGGAGTTGGAAAAAGAAAAAAGGGGTTTTCTTACAGGAGCTACATTCATCCAAGATAACAAAGATGGAGCTCTTGAAATCACTGTTAATGGTGACAAATACCGATGCCTCAGATATGCCAAAGCTAAGAAATGAATTCTATCCCTCAACAACATTTATTTCATTCCACATTTTACTTTTTTTTCTATAAACTACCACCCGGACTTTCAATTTTAGTTCATTATGATTCCTGTACTATCAAAATGTTCATTATAGTTTTCATACTTTTAACGTTTGTTCATTTTAGTCTCTTTATTTTG

mRNA sequence

TGCAAGAAATAGATATATATATATTAATGGAAGAGATGGTTTAGTTCTTTCACAGTACAAGCAACCAAATATACTCAAAGATACAAAAGATGGAATGACAAGATGAAGAGATGAAGCTGGCGGCAACAGTGTCTTATTTGCCGACAGAGATGGTGGCTCGTTGTCTGATTGCGTTGAGGAGGAGAAATGGTGGTAGCTTCACTCTCTTTCGATGTTGAGGCTCAGCAAGTCTCCGATGATGATGGAGATGGTGCACTCGACTGTCGCCAGGAAGGAAGAGATGAAAGATGGCTGCCTGATTCCCGAACTCTTCTTTGGCACAAAGAATTTCTCTAAATATCTAATCTCTAATTTCTAACTAACTAACTATCTAACCCCTTGATCTGTATTTTAGTTGGCTTTTATAGCCCCAAAATTGTACTTTATATTATGTCAGCGGATAAGTTTCTGACGCAGAGGATCAGGCTGCGTTTGACAATCGTCCTCTTTGATCAGGTAGGCTGTCACTGTTCAGCGGCTCAAGGGGCCGAAAATCCTCTATCTCTAGCTGTCAAGATCAGGTTACCCAAGGTTCCAGGATTTGTCTTTTAGTGTCATGCGTATGATGTATGCGTTCTTCGTTTGTCTTCATGCATGCGTTGAACCTTGATTACCCGTTCTGGGGAATAGCTCTGGCTTTGAAGAAGCCCAATTCCCCATTAAGCAAGCAGGTCTCAGGCAAAAGAGGTCCCCAACTCCTGGGAGAATTTAATTGCTTCTCGTTGGGGTTTTGAATATTGCCGCTTTGATCATCCTTGCAATTAGGCAATGGATTTTTTCTCTACTCATTCTGTCTTTATCTTACTTGTTGAGGCCTCACGAGATTTTCTTTTGTTGCTGCTGCTGCAAAATTATTACCGATCCCAAGATGAAGCCTCTGATAGCGTATAGCGTTCGATTACAACAATCTAACTTTGATAACATGGCTGATTAACTAGCTTTGAAGAATTATACAAACCTTGGATATTCCAAGGCAAAAGAGTCATTCCAAAGAAGTTCAAATAGAACGTCTTGTCACCAGTAATCACCACAAGAGCACACACCATCCCGAAAATGATGGTATCGAATAGGATCTCGAATGACAATCACTCGATTCTCCAACTGTGCAACAAGTTTTGCAAAGATATGACAGTCTCCACAGATTCTGAGGTTTTTCCTTATATGAATGGTTTTCTGATTTGGCAAACTCATCAAACCAAACACAATTGCCAGTTTCTCGCTGTGGTATTGAAGGGAATCCTCCATCTGTTCTCCTTCAAGATCCTGCAGCACAAAATTTGTATCGGGAACATAACCCACTCTCATTAATCTTTGAATTAATTGGCGTAGCTCCCTCTTTATCTCTTCTATTCTTGGATGTGAGTTGTCACCCAATATAAAAGCATGAACTTGTTTGCTCACTTCAATCCAGCTGCATCCTGGTTCTTTCTTCACTCCCCTAGCTCTCATCCTCATCCTAACTTCTGCAACATCTTCCCATTTCTGTGAATTGGCATAAATATTCGATAACAATATGTACGTCCCAGCATCGGCAGGATCCAGTTTCAGGATTTCTTTAGCAGCATATATGGCTAAATCCACATTCTTGTGGACTCTGCAAGCACCAAGCAAGATTCGCCATGTCACTGCATCTGGTTCATGGTTCATTTCATGAATCAACTTCACGGCTTCATCAAGCTTTCCAGCTCTTCCAAGAAGATCAATTATGCAACCATAGTGCTCTCTTCCAGGATCGATCCCAAAAAGCTTTTTCATAGATTGAAAATAGTACCATCCATCTTTTACAAGCCCTGCATGACTACAGGCAAAAAGAACCCCAAGTACAGTGATGTAATTTGGCTTTGGCCCTTTAGATTTCATTGATTCAAACAATTTGAGCGCGTCTGTGCTAAAGCCATTTTGAGCTAATCCTGCAATCATAGTGCTCCATGAGATGACATCCTTCTCTGTCATCGTCCTAGTGAAAAGAAGGTTTGCATCTTCTAGACTGCCACATTTGCAATACATGTCAAGAAGTGCGTTGTTAAGGATTAGATCCTGATCATACTTCAATACATGGACATGGACCTGTCTGCCCAACTCTAAGAGCGCTAGCCCAGTGCAGGCTCGCAAAACACTAGTTACTGTAGACTGATCAGCCGCAAAACCAGCTCTCTTCATTCTCTTATAAAGATGTAAAGCTTCATCCCCATCACTGTTCTGAGCAAAACCACCAATAATGGAGTTCCACACAACCAAATCACCTGTAACCATCTCGTTAAAGACATTCAAAGCATCTTGCTGTTCACCCAATTTTGAGTAAGTGTCGATCAGAGCACTCCTTACAAAGACATCAGATTCCAAACCCACCTTCATGATACTACCATGTAGCTGCCTGAGGTTCAACAAACCATCGCAAGCTCTCAAAACAGAAGAATACGTATACATATTAGGTCGAACACCTTCTCTAAGCATCAATATCAGAAACTCCAACGCCTTATGATTAAGATTGGAATTGGAGTAAGCAGATATCATAGTCGTCCAAGAGACAACATTCCTGTCAGGCATTTCGTCGAACAGATTCTGGGCTTCATCCAAAAGGCCGAATTTTACATACATATTAAGCAGAATATTGATCAAGAATGTTTTGGGCTCATACCCATTTGAAAAAACATGCTTATGAATAAGCCGACCTTGTTCTACAGCCCCACGAAAAAGGCAGCACTTAATGAGCTCGGAGTAAGTAATTGCATCAGCGCAGAGACGGTTACTCTGCATCGCTTCCATCGCTTTCATGGCTCTCGGAAGATCCCTCTGATAGCAAAACTTCGTGAACTCGTCGACTAACGAGTAAGCCGACACTGAACAAAAGCTCCGAGCAAGCTTCAGCATTAAAGTTGGCCTTCTCTTGGCTTTTTCAAGGATGAAAAACACAAAAGCGGTAGATTCAAATCATCCATGAAAAACAGATTCGAAGCTCATAAGCCAAGCTTCTTCACAAATTGTAATAAAATCCGATGTCGCTCGATTCTCACTCCATCTGACTCCAAATCCCTTCATTGGTGAAAACGAAACGCACAAAAGAAGAAAACCCTAGGAGCAATATAAAAAAAAGGTTAATGGGGATAGGAAATCGCGGGTGAGAAGTTGAGATTGAAAATGTTGTGGAGAATAAAAGCGTTGGTAGATAAGTTCGTGGAGGAAGTGAAGGCGGAGATTGAAGCGGATTTTGAAGATAGAATGAGGAAGGAGAAAGAAATGCAGAGCAACATCAAAGAAGGAGAACAGGAAGTAACTGAGCGGGAAGCTGAATGGAAGGCCGAGCTTTCACGCCGAGAGGCAGAGGTTGCACGACAAGAATTAAAGTTGAGAATGGAGAAGGAGGAGTTGGAAAAAGAAAAAAGGGGTTTTCTTACAGGAGCTACATTCATCCAAGATAACAAAGATGGAGCTCTTGAAATCACTGTTAATGGTGACAAATACCGATGCCTCAGATATGCCAAAGCTAAGAAATGAATTCTATCCCTCAACAACATTTATTTCATTCCACATTTTACTTTTTTTTCTATAAACTACCACCCGGACTTTCAATTTTAGTTCATTATGATTCCTGTACTATCAAAATGTTCATTATAGTTTTCATACTTTTAACGTTTGTTCATTTTAGTCTCTTTATTTTG

Coding sequence (CDS)

ATGTTGTGGAGAATAAAAGCGTTGGTAGATAAGTTCGTGGAGGAAGTGAAGGCGGAGATTGAAGCGGATTTTGAAGATAGAATGAGGAAGGAGAAAGAAATGCAGAGCAACATCAAAGAAGGAGAACAGGAAGTAACTGAGCGGGAAGCTGAATGGAAGGCCGAGCTTTCACGCCGAGAGGCAGAGGTTGCACGACAAGAATTAAAGTTGAGAATGGAGAAGGAGGAGTTGGAAAAAGAAAAAAGGGGTTTTCTTACAGGAGCTACATTCATCCAAGATAACAAAGATGGAGCTCTTGAAATCACTGTTAATGGTGACAAATACCGATGCCTCAGATATGCCAAAGCTAAGAAATGA

Protein sequence

MLWRIKALVDKFVEEVKAEIEADFEDRMRKEKEMQSNIKEGEQEVTEREAEWKAELSRREAEVARQELKLRMEKEELEKEKRGFLTGATFIQDNKDGALEITVNGDKYRCLRYAKAKK
BLAST of Lsi10G000070 vs. TrEMBL
Match: A0A061E1K0_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_007592 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.7e-32
Identity = 83/118 (70.34%), Postives = 98/118 (83.05%), Query Frame = 1

Query: 1   MLWRIKALVDKFVEEVKAEIEADFEDRMRKEKEMQSNIKEGEQEVTEREAEWKAELSRRE 60
           M  RIKA+VDKFVEE+K  +EAD +DR+ KE+EMQS I+E E+EV EREA WKAELSRRE
Sbjct: 1   MSLRIKAVVDKFVEELKEALEADIQDRIMKEREMQSYIEEREREVAEREAAWKAELSRRE 60

Query: 61  AEVARQELKLRMEKEELEKEKRGFLTGATFIQDNKDGALEITVNGDKYRCLRYAKAKK 119
           AE+ARQE +L+MEKE LEKEK   L G    QDN+DGALEITV+G+KYRCLR+AKAKK
Sbjct: 61  AEIARQEARLKMEKENLEKEK-SVLMGTASNQDNQDGALEITVSGEKYRCLRFAKAKK 117

BLAST of Lsi10G000070 vs. TrEMBL
Match: A0A0A0K6A6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G027820 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 3.9e-32
Identity = 82/118 (69.49%), Postives = 98/118 (83.05%), Query Frame = 1

Query: 1   MLWRIKALVDKFVEEVKAEIEADFEDRMRKEKEMQSNIKEGEQEVTEREAEWKAELSRRE 60
           M  RIKA+VDKFVEE+K  ++AD +DR+ KE+EMQS I+E E+EV EREA WKAELSRRE
Sbjct: 1   MSLRIKAVVDKFVEELKEALDADIQDRIMKEREMQSYIEEREREVAEREAAWKAELSRRE 60

Query: 61  AEVARQELKLRMEKEELEKEKRGFLTGATFIQDNKDGALEITVNGDKYRCLRYAKAKK 119
           AE+ARQE +L+MEKE LEKEK   L G    QDN+DGALEITV+G+KYRCLR+AKAKK
Sbjct: 61  AEIARQEARLKMEKENLEKEK-SVLMGTASNQDNQDGALEITVSGEKYRCLRFAKAKK 117

BLAST of Lsi10G000070 vs. TrEMBL
Match: B9RKZ1_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1566200 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 3.9e-32
Identity = 82/118 (69.49%), Postives = 98/118 (83.05%), Query Frame = 1

Query: 1   MLWRIKALVDKFVEEVKAEIEADFEDRMRKEKEMQSNIKEGEQEVTEREAEWKAELSRRE 60
           M  RIKA+VDKFVEE+K  ++AD +DR+ KE+EMQS I+E E+EV EREA WKAELSRRE
Sbjct: 1   MSLRIKAVVDKFVEELKEALDADIQDRIMKEREMQSYIEEREREVAEREAAWKAELSRRE 60

Query: 61  AEVARQELKLRMEKEELEKEKRGFLTGATFIQDNKDGALEITVNGDKYRCLRYAKAKK 119
           AE+ARQE +L+MEKE LEKEK   L G    QDN+DGALEITV+G+KYRCLR+AKAKK
Sbjct: 61  AEIARQEARLKMEKENLEKEK-SVLMGTASNQDNQDGALEITVSGEKYRCLRFAKAKK 117

BLAST of Lsi10G000070 vs. TrEMBL
Match: A0A0D2RJG8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G216300 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 6.6e-32
Identity = 83/118 (70.34%), Postives = 96/118 (81.36%), Query Frame = 1

Query: 1   MLWRIKALVDKFVEEVKAEIEADFEDRMRKEKEMQSNIKEGEQEVTEREAEWKAELSRRE 60
           M  RIKA+VDKFVEE+K  +EAD  DR  KE+EMQS I+E E+EV EREA WKAELSRRE
Sbjct: 1   MSLRIKAVVDKFVEELKEALEADMHDREMKEREMQSYIEEREREVAEREAAWKAELSRRE 60

Query: 61  AEVARQELKLRMEKEELEKEKRGFLTGATFIQDNKDGALEITVNGDKYRCLRYAKAKK 119
           AE+ARQE +L+MEKE LEKEK   L G    QDN+DGALEITV+G+KYRCLR+AKAKK
Sbjct: 61  AEIARQEARLKMEKENLEKEK-SVLMGTASNQDNQDGALEITVSGEKYRCLRFAKAKK 117

BLAST of Lsi10G000070 vs. TrEMBL
Match: A0A067KL35_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14727 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 8.6e-32
Identity = 81/118 (68.64%), Postives = 98/118 (83.05%), Query Frame = 1

Query: 1   MLWRIKALVDKFVEEVKAEIEADFEDRMRKEKEMQSNIKEGEQEVTEREAEWKAELSRRE 60
           M  RIKA+VDKFV+E+K  ++AD +DR+ KE+EMQS I+E E+EV EREA WKAELSRRE
Sbjct: 1   MSLRIKAVVDKFVQELKEALDADIQDRIMKEREMQSYIEEREREVAEREAAWKAELSRRE 60

Query: 61  AEVARQELKLRMEKEELEKEKRGFLTGATFIQDNKDGALEITVNGDKYRCLRYAKAKK 119
           AE+ARQE +L+MEKE LEKEK   L G    QDN+DGALEITV+G+KYRCLR+AKAKK
Sbjct: 61  AEIARQEARLKMEKENLEKEK-SVLMGTASNQDNQDGALEITVSGEKYRCLRFAKAKK 117

BLAST of Lsi10G000070 vs. TAIR10
Match: AT2G17350.1 (AT2G17350.1 unknown protein)

HSP 1 Score: 139.8 bits (351), Expect = 1.1e-33
Identity = 78/118 (66.10%), Postives = 96/118 (81.36%), Query Frame = 1

Query: 1   MLWRIKALVDKFVEEVKAEIEADFEDRMRKEKEMQSNIKEGEQEVTEREAEWKAELSRRE 60
           M  RIK +VDKFVEE+K  ++AD +DR+ KE+EMQS I+E E+EV EREA WKAELSRRE
Sbjct: 1   MSLRIKLVVDKFVEELKQALDADIQDRIMKEREMQSYIEEREREVAEREAAWKAELSRRE 60

Query: 61  AEVARQELKLRMEKEELEKEKRGFLTGATFIQDNKDGALEITVNGDKYRCLRYAKAKK 119
            E+ARQE +L+ME+E LEKEK   L G    QDN+DGALEITV+G+KYRCLR++KAKK
Sbjct: 61  TEIARQEARLKMERENLEKEK-SVLMGTASNQDNQDGALEITVSGEKYRCLRFSKAKK 117

BLAST of Lsi10G000070 vs. NCBI nr
Match: gi|590688977|ref|XP_007043098.1| (Uncharacterized protein TCM_007592 [Theobroma cacao])

HSP 1 Score: 146.7 bits (369), Expect = 2.5e-32
Identity = 83/118 (70.34%), Postives = 98/118 (83.05%), Query Frame = 1

Query: 1   MLWRIKALVDKFVEEVKAEIEADFEDRMRKEKEMQSNIKEGEQEVTEREAEWKAELSRRE 60
           M  RIKA+VDKFVEE+K  +EAD +DR+ KE+EMQS I+E E+EV EREA WKAELSRRE
Sbjct: 1   MSLRIKAVVDKFVEELKEALEADIQDRIMKEREMQSYIEEREREVAEREAAWKAELSRRE 60

Query: 61  AEVARQELKLRMEKEELEKEKRGFLTGATFIQDNKDGALEITVNGDKYRCLRYAKAKK 119
           AE+ARQE +L+MEKE LEKEK   L G    QDN+DGALEITV+G+KYRCLR+AKAKK
Sbjct: 61  AEIARQEARLKMEKENLEKEK-SVLMGTASNQDNQDGALEITVSGEKYRCLRFAKAKK 117

BLAST of Lsi10G000070 vs. NCBI nr
Match: gi|255546702|ref|XP_002514410.1| (PREDICTED: uncharacterized protein LOC8285380 [Ricinus communis])

HSP 1 Score: 145.6 bits (366), Expect = 5.5e-32
Identity = 82/118 (69.49%), Postives = 98/118 (83.05%), Query Frame = 1

Query: 1   MLWRIKALVDKFVEEVKAEIEADFEDRMRKEKEMQSNIKEGEQEVTEREAEWKAELSRRE 60
           M  RIKA+VDKFVEE+K  ++AD +DR+ KE+EMQS I+E E+EV EREA WKAELSRRE
Sbjct: 1   MSLRIKAVVDKFVEELKEALDADIQDRIMKEREMQSYIEEREREVAEREAAWKAELSRRE 60

Query: 61  AEVARQELKLRMEKEELEKEKRGFLTGATFIQDNKDGALEITVNGDKYRCLRYAKAKK 119
           AE+ARQE +L+MEKE LEKEK   L G    QDN+DGALEITV+G+KYRCLR+AKAKK
Sbjct: 61  AEIARQEARLKMEKENLEKEK-SVLMGTASNQDNQDGALEITVSGEKYRCLRFAKAKK 117

BLAST of Lsi10G000070 vs. NCBI nr
Match: gi|823160142|ref|XP_012479913.1| (PREDICTED: uncharacterized protein LOC105795028 [Gossypium raimondii])

HSP 1 Score: 144.8 bits (364), Expect = 9.4e-32
Identity = 83/118 (70.34%), Postives = 96/118 (81.36%), Query Frame = 1

Query: 1   MLWRIKALVDKFVEEVKAEIEADFEDRMRKEKEMQSNIKEGEQEVTEREAEWKAELSRRE 60
           M  RIKA+VDKFVEE+K  +EAD  DR  KE+EMQS I+E E+EV EREA WKAELSRRE
Sbjct: 1   MSLRIKAVVDKFVEELKEALEADMHDREMKEREMQSYIEEREREVAEREAAWKAELSRRE 60

Query: 61  AEVARQELKLRMEKEELEKEKRGFLTGATFIQDNKDGALEITVNGDKYRCLRYAKAKK 119
           AE+ARQE +L+MEKE LEKEK   L G    QDN+DGALEITV+G+KYRCLR+AKAKK
Sbjct: 61  AEIARQEARLKMEKENLEKEK-SVLMGTASNQDNQDGALEITVSGEKYRCLRFAKAKK 117

BLAST of Lsi10G000070 vs. NCBI nr
Match: gi|225437000|ref|XP_002277553.1| (PREDICTED: uncharacterized protein LOC100245962 [Vitis vinifera])

HSP 1 Score: 144.4 bits (363), Expect = 1.2e-31
Identity = 81/118 (68.64%), Postives = 98/118 (83.05%), Query Frame = 1

Query: 1   MLWRIKALVDKFVEEVKAEIEADFEDRMRKEKEMQSNIKEGEQEVTEREAEWKAELSRRE 60
           M  RIKA+VDKFV+E+K  ++AD +DR+ KE+EMQS I+E E+EV EREA WKAELSRRE
Sbjct: 1   MSLRIKAVVDKFVQELKEALDADIQDRIMKEREMQSYIEEREREVAEREAAWKAELSRRE 60

Query: 61  AEVARQELKLRMEKEELEKEKRGFLTGATFIQDNKDGALEITVNGDKYRCLRYAKAKK 119
           AE+ARQE +L+MEKE LEKEK   L G    QDN+DGALEITV+G+KYRCLR+AKAKK
Sbjct: 61  AEIARQEARLKMEKENLEKEK-SVLMGTASNQDNQDGALEITVSGEKYRCLRFAKAKK 117

BLAST of Lsi10G000070 vs. NCBI nr
Match: gi|224102767|ref|XP_002312794.1| (hypothetical protein POPTR_0009s17020g [Populus trichocarpa])

HSP 1 Score: 143.7 bits (361), Expect = 2.1e-31
Identity = 80/118 (67.80%), Postives = 98/118 (83.05%), Query Frame = 1

Query: 1   MLWRIKALVDKFVEEVKAEIEADFEDRMRKEKEMQSNIKEGEQEVTEREAEWKAELSRRE 60
           M  RIKA+VDKFV+E+K  ++AD +DR+ KE+EMQS I+E E+EV EREA WKAELSRRE
Sbjct: 1   MSMRIKAVVDKFVQELKEALDADIQDRIMKEREMQSYIEEREREVAEREAAWKAELSRRE 60

Query: 61  AEVARQELKLRMEKEELEKEKRGFLTGATFIQDNKDGALEITVNGDKYRCLRYAKAKK 119
           AE+ARQE +L+MEKE LEKEK   L G    QDN+DGALEITV+G+KYRCLR++KAKK
Sbjct: 61  AEIARQEARLKMEKENLEKEK-SVLMGTASNQDNQDGALEITVSGEKYRCLRFSKAKK 117

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A061E1K0_THECC1.7e-3270.34Uncharacterized protein OS=Theobroma cacao GN=TCM_007592 PE=4 SV=1[more]
A0A0A0K6A6_CUCSA3.9e-3269.49Uncharacterized protein OS=Cucumis sativus GN=Csa_7G027820 PE=4 SV=1[more]
B9RKZ1_RICCO3.9e-3269.49Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1566200 PE=4 SV=1[more]
A0A0D2RJG8_GOSRA6.6e-3270.34Uncharacterized protein OS=Gossypium raimondii GN=B456_005G216300 PE=4 SV=1[more]
A0A067KL35_JATCU8.6e-3268.64Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14727 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G17350.11.1e-3366.10 unknown protein[more]
Match NameE-valueIdentityDescription
gi|590688977|ref|XP_007043098.1|2.5e-3270.34Uncharacterized protein TCM_007592 [Theobroma cacao][more]
gi|255546702|ref|XP_002514410.1|5.5e-3269.49PREDICTED: uncharacterized protein LOC8285380 [Ricinus communis][more]
gi|823160142|ref|XP_012479913.1|9.4e-3270.34PREDICTED: uncharacterized protein LOC105795028 [Gossypium raimondii][more]
gi|225437000|ref|XP_002277553.1|1.2e-3168.64PREDICTED: uncharacterized protein LOC100245962 [Vitis vinifera][more]
gi|224102767|ref|XP_002312794.1|2.1e-3167.80hypothetical protein POPTR_0009s17020g [Populus trichocarpa][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0005982 starch metabolic process
biological_process GO:0005985 sucrose metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0004650 polygalacturonase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi10G000070.1Lsi10G000070.1mRNA


Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 31..51
score: -coord: 56..83
scor
NoneNo IPR availablePANTHERPTHR35715FAMILY NOT NAMEDcoord: 4..118
score: 4.6
NoneNo IPR availablePANTHERPTHR35715:SF1SUBFAMILY NOT NAMEDcoord: 4..118
score: 4.6

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Lsi10G000070Lsi11G013040Bottle gourd (USVL1VR-Ls)lsilsiB022